Wall clock time and date at job start Mon Mar 30 2020 07:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47524 * 240.00076 * 3 2 1 5 5 H 1.48506 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47277 * 119.99742 * 3 2 1 7 7 C 1.37878 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46911 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47084 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47032 * 180.02562 * 12 11 10 14 14 C 1.46905 * 110.99648 * 180.02562 * 13 12 11 15 15 H 1.09002 * 115.55023 * 350.58122 * 14 13 12 16 16 C 1.53002 * 117.49993 * 136.25433 * 14 13 12 17 17 C 1.53000 * 117.49884 * 204.91153 * 14 13 12 18 18 H 1.08999 * 117.49959 * 144.99278 * 17 14 13 19 19 C 1.50701 * 117.49727 * 359.97438 * 17 14 13 20 20 C 1.38237 * 120.00429 * 299.72921 * 19 17 14 21 21 C 1.38230 * 119.99963 * 179.76242 * 20 19 17 22 22 C 1.38237 * 120.00561 * 0.48588 * 21 20 19 23 23 C 1.38233 * 119.99508 * 359.78922 * 22 21 20 24 24 C 1.38234 * 120.00190 * 359.95515 * 23 22 21 25 25 H 0.97002 * 119.99679 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46775 * 59.99547 * 9 7 2 27 27 H 1.08998 * 109.46905 * 300.00102 * 9 7 2 28 28 H 1.09003 * 109.46668 * 60.00045 * 10 9 7 29 29 H 1.08998 * 109.47631 * 300.00175 * 10 9 7 30 30 H 1.09003 * 109.47191 * 60.00643 * 11 10 9 31 31 H 1.08998 * 109.47755 * 300.00284 * 11 10 9 32 32 H 1.09003 * 109.46602 * 60.00257 * 12 11 10 33 33 H 1.08998 * 109.47036 * 300.00699 * 12 11 10 34 34 H 1.00900 * 110.99930 * 303.94917 * 13 12 11 35 35 H 1.09000 * 117.49996 * 215.00488 * 16 14 13 36 36 H 1.08999 * 117.49664 * 0.02562 * 16 14 13 37 37 H 1.08002 * 119.99497 * 359.97438 * 20 19 17 38 38 H 1.08001 * 119.99847 * 180.24905 * 21 20 19 39 39 H 1.08001 * 120.00374 * 179.76526 * 22 21 20 40 40 H 1.07996 * 120.00091 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00409 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 7 1.7399 -7.4222 0.0018 14 6 2.6644 -8.5639 0.0031 15 1 3.7144 -8.3187 -0.1572 16 6 2.3464 -9.7295 0.9417 17 6 2.1529 -9.8878 -0.5684 18 1 2.8663 -10.5136 -1.1046 19 6 0.7390 -9.9209 -1.0889 20 6 -0.3163 -9.6392 -0.2416 21 6 -1.6128 -9.6648 -0.7203 22 6 -1.8549 -9.9820 -2.0439 23 6 -0.8000 -10.2693 -2.8898 24 6 0.4969 -10.2385 -2.4124 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8538 -5.0446 0.8913 32 1 3.1010 -6.0918 0.8919 33 1 3.1012 -6.0927 -0.8881 34 1 1.1032 -7.4721 0.7830 35 1 3.1871 -10.2512 1.3991 36 1 1.4509 -9.6494 1.5580 37 1 -0.1275 -9.3957 0.7935 38 1 -2.4370 -9.4407 -0.0593 39 1 -2.8682 -10.0057 -2.4169 40 1 -0.9891 -10.5175 -3.9237 41 1 1.3212 -10.4626 -3.0733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385776321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:49 Heat of formation + Delta-G solvation = 11.109516 kcal Electronic energy + Delta-G solvation = -18122.806961 eV Core-core repulsion = 15387.497129 eV Total energy + Delta-G solvation = -2735.309832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58736 -38.52389 -36.87725 -35.10738 -33.27917 -31.72744 -31.19019 -29.48889 -26.14536 -24.64909 -23.46901 -23.01869 -22.37469 -21.65933 -20.82932 -18.43349 -17.84412 -16.90744 -16.69741 -16.49283 -16.10200 -15.55833 -15.42384 -14.80440 -14.46565 -14.35458 -14.17129 -13.79713 -13.65241 -13.51729 -13.16225 -12.83337 -12.71643 -12.45146 -12.29841 -12.12777 -11.88368 -11.86253 -11.72324 -11.38713 -11.32897 -11.26016 -10.95072 -10.55155 -9.71333 -9.50072 -8.98704 -8.19781 -6.31646 0.55119 0.61284 1.39412 1.43066 1.51013 2.40961 2.72396 3.10941 3.12773 3.21169 3.77883 3.97934 4.06230 4.11607 4.18549 4.23339 4.27902 4.35758 4.40789 4.50696 4.65435 4.68200 4.74666 4.80321 4.89779 4.93258 4.94789 5.14735 5.23972 5.25988 5.26879 5.28585 5.35445 5.54643 5.68295 5.72194 5.77439 5.83376 5.86535 6.13910 6.23935 6.25459 6.41859 6.85779 7.37714 8.91984 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.003168 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.442348 B = 8837.020004 C = 9467.843824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.075 3.925 13 N -0.663 5.663 14 C 0.030 3.970 15 H 0.120 0.880 16 C -0.186 4.186 17 C -0.118 4.118 18 H 0.124 0.876 19 C -0.041 4.041 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.133 4.133 25 H 0.264 0.736 26 H -0.013 1.013 27 H -0.011 1.011 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.343 0.657 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -24.091 -0.711 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.053 4.053 13 N -0.293 5.293 14 C -0.081 4.081 15 H 0.138 0.862 16 C -0.224 4.224 17 C -0.137 4.137 18 H 0.142 0.858 19 C -0.041 4.041 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.150 4.150 25 H 0.072 0.928 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.577 -23.962 -1.391 24.140 hybrid contribution 0.183 1.122 0.780 1.379 sum 2.761 -22.840 -0.610 23.014 Atomic orbital electron populations 1.70103 1.07897 1.27843 1.51651 1.26035 0.95805 1.03526 0.94690 0.85476 0.78261 0.77910 0.79255 1.19111 1.20786 1.19026 1.21725 0.93600 0.92510 1.50623 0.92105 1.19021 0.94526 0.93386 0.94513 1.21385 0.97941 0.93540 1.00523 1.21448 0.98074 0.93573 1.01194 1.21867 0.95165 0.87596 1.00721 1.60110 1.18812 1.00790 1.49539 1.22582 0.96088 0.85861 1.03572 0.86208 1.23676 1.04205 1.02577 0.91956 1.21484 0.94553 1.01116 0.96551 0.85797 1.19165 0.93638 0.97558 0.93735 1.21092 0.92538 1.00332 1.00001 1.21373 0.97239 0.99888 0.96392 1.21381 0.99871 1.00664 0.94135 1.21368 0.92765 1.00104 1.00443 1.21162 0.97419 1.01215 0.95253 0.92768 0.99496 0.99220 0.92873 0.93114 0.93193 0.92914 0.94259 0.91098 0.83737 0.86557 0.88224 0.85889 0.85170 0.84900 0.84670 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 11 C -0.10 -3.64 5.47 30.60 0.17 -3.48 16 12 C 0.08 2.04 5.54 86.31 0.48 2.52 16 13 N -0.66 -15.98 5.65 -491.55 -2.78 -18.75 16 14 C 0.03 0.57 6.26 44.92 0.28 0.85 16 15 H 0.12 2.10 7.90 -2.39 -0.02 2.08 16 16 C -0.19 -2.83 9.56 30.62 0.29 -2.53 16 17 C -0.12 -2.12 6.05 -11.52 -0.07 -2.18 16 18 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.04 -0.88 5.24 -19.86 -0.10 -0.99 16 20 C -0.12 -2.64 8.44 22.27 0.19 -2.45 16 21 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 22 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 24 C -0.13 -2.81 9.74 22.27 0.22 -2.59 16 25 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 26 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.34 7.91 7.87 -89.69 -0.71 7.21 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.52 6.11 -2.39 -0.01 1.50 16 37 H 0.12 2.35 5.65 -2.91 -0.02 2.34 16 38 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -67.26 338.16 2.94 -64.32 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.28 Total: 18.03 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 3.12 Total: -52.52 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.49 Total: -76.83 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.26 2.94 -64.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385776321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.432 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds