Wall clock time and date at job start Mon Mar 30 2020 07:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00101 * 179.97438 * 13 12 11 15 15 H 1.09002 * 115.55426 * 9.33127 * 14 13 12 16 16 C 1.53002 * 117.50231 * 223.62094 * 14 13 12 17 17 C 1.52993 * 60.00074 * 252.50997 * 16 14 13 18 18 H 1.08997 * 117.52153 * 107.48114 * 17 16 14 19 19 C 1.50706 * 117.49958 * 252.50710 * 17 16 14 20 20 C 1.38240 * 119.99460 * 8.35066 * 19 17 16 21 21 C 1.38236 * 119.99413 * 179.79102 * 20 19 17 22 22 C 1.38239 * 120.00325 * 0.43513 * 21 20 19 23 23 C 1.38235 * 119.99502 * 359.81565 * 22 21 20 24 24 C 1.38230 * 120.00533 * 359.97438 * 23 22 21 25 25 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 31 31 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 32 32 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 33 33 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 34 34 H 1.00894 * 111.00473 * 56.04826 * 13 12 11 35 35 H 1.09000 * 117.49552 * 359.97438 * 16 14 13 36 36 H 1.09001 * 117.50301 * 145.01946 * 16 14 13 37 37 H 1.08000 * 120.00172 * 359.97438 * 20 19 17 38 38 H 1.08004 * 119.99975 * 180.27743 * 21 20 19 39 39 H 1.07996 * 119.99946 * 179.83985 * 22 21 20 40 40 H 1.08005 * 119.99683 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00349 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 6 6.0616 -4.0789 -0.0221 13 7 7.5306 -4.0789 -0.0271 14 6 8.0570 -5.4502 -0.0319 15 1 7.3191 -6.2366 -0.1906 16 6 9.2306 -5.7598 0.8997 17 6 9.4566 -5.6677 -0.6107 18 1 9.9865 -4.7933 -0.9882 19 6 9.7094 -6.9529 -1.3561 20 6 9.5607 -8.1666 -0.7113 21 6 9.7884 -9.3455 -1.3962 22 6 10.1735 -9.3105 -2.7234 23 6 10.3272 -8.0967 -3.3667 24 6 10.0953 -6.9178 -2.6830 25 1 -0.4850 0.8400 -0.0004 26 1 3.8713 -0.6783 -0.8962 27 1 3.8786 -0.6819 0.8837 28 1 3.6619 -3.1521 0.8797 29 1 3.6545 -3.1485 -0.9003 30 1 5.9116 -2.1207 -0.9068 31 1 5.9183 -2.1245 0.8731 32 1 5.7016 -4.5950 0.8679 33 1 5.6950 -4.5905 -0.9120 34 1 7.8948 -3.5549 0.7544 35 1 9.6123 -4.9457 1.5159 36 1 9.2648 -6.7499 1.3543 37 1 9.2637 -8.1938 0.3267 38 1 9.6678 -10.2939 -0.8938 39 1 10.3539 -10.2315 -3.2578 40 1 10.6285 -8.0693 -4.4035 41 1 10.2158 -5.9694 -3.1855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385776325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:54 Heat of formation + Delta-G solvation = 28.427099 kcal Electronic energy + Delta-G solvation = -17681.421737 eV Core-core repulsion = 14946.862852 eV Total energy + Delta-G solvation = -2734.558885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91518 -37.84827 -35.59491 -33.43946 -31.87882 -31.17902 -30.42369 -28.19186 -24.40788 -24.00657 -22.66437 -21.71194 -21.29102 -20.42094 -19.91923 -17.40800 -16.64857 -15.99117 -15.70335 -15.26041 -14.89009 -14.66464 -14.16959 -13.85991 -13.64185 -13.25255 -13.04428 -12.70476 -12.55271 -12.18827 -11.95604 -11.76830 -11.52133 -11.31228 -11.19589 -10.99319 -10.76114 -10.61209 -10.49278 -9.86705 -9.66656 -9.49037 -9.16565 -9.13539 -8.92872 -8.50553 -8.21960 -6.01252 -3.98851 1.08014 1.16081 3.33367 3.35582 3.40300 3.44725 3.81778 3.91482 4.48333 4.50228 4.60639 4.71425 4.75998 4.84638 4.88597 5.01924 5.23877 5.31549 5.33982 5.36284 5.41422 5.46385 5.58273 5.74608 5.80387 5.81041 5.88125 6.04835 6.13738 6.24477 6.27550 6.37213 6.42286 6.67026 6.76048 6.77023 6.90125 7.06147 7.28076 7.36292 7.49183 7.83848 8.57963 9.04011 9.61716 11.12373 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.002590 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.603702 B =10809.031648 C =10928.712710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.061 3.939 13 N -0.660 5.660 14 C 0.045 3.955 15 H 0.110 0.890 16 C -0.200 4.200 17 C -0.112 4.112 18 H 0.116 0.884 19 C -0.045 4.045 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.014 0.986 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.343 0.657 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.416 -16.722 -1.689 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.068 4.068 13 N -0.290 5.290 14 C -0.066 4.066 15 H 0.128 0.872 16 C -0.238 4.238 17 C -0.131 4.131 18 H 0.134 0.866 19 C -0.045 4.045 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.274 -16.502 -2.365 28.628 hybrid contribution 0.195 0.624 0.839 1.064 sum 23.468 -15.878 -1.526 28.376 Atomic orbital electron populations 1.69925 1.06309 1.26823 1.51449 1.25058 0.94750 0.99236 0.94649 0.86751 0.80325 0.83544 0.78497 1.20311 1.21463 1.19019 1.21190 0.89695 0.94401 1.50472 0.91130 1.19573 0.96960 0.92468 0.96151 1.21414 0.91684 0.99830 1.00994 1.21682 0.97629 0.94412 1.01976 1.22117 0.85400 0.98658 1.00588 1.60177 1.08858 1.10842 1.49111 1.22546 0.90228 0.91994 1.01855 0.87219 1.23635 1.04293 1.03409 0.92493 1.21328 1.01135 0.96424 0.94215 0.86589 1.19194 0.98270 0.93217 0.93830 1.21078 1.01048 0.92026 1.00054 1.21124 0.99662 0.98016 0.94797 1.21143 1.00621 0.97892 0.95068 1.21152 1.00044 0.92506 0.99872 1.21014 0.99642 0.98501 0.93876 0.92808 0.97071 0.96771 0.92996 0.92786 0.91600 0.92680 0.95027 0.90912 0.83794 0.88229 0.88372 0.86033 0.86176 0.86253 0.86066 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.15 27.46 -169.99 -4.67 17.48 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.41 6.55 56.52 0.37 -6.04 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.14 16 11 C -0.12 -1.90 5.47 -26.73 -0.15 -2.05 16 12 C 0.06 0.82 5.54 -3.83 -0.02 0.80 16 13 N -0.66 -7.85 6.78 -106.73 -0.72 -8.57 16 14 C 0.05 0.47 5.95 -67.71 -0.40 0.07 16 15 H 0.11 1.19 7.90 -51.93 -0.41 0.78 16 16 C -0.20 -1.71 9.56 -26.73 -0.26 -1.96 16 17 C -0.11 -1.08 5.97 -91.77 -0.55 -1.63 16 18 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.04 -0.44 5.61 -104.62 -0.59 -1.03 16 20 C -0.12 -1.13 9.30 -39.58 -0.37 -1.50 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 22 C -0.13 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 24 C -0.11 -1.07 9.74 -39.59 -0.39 -1.46 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16 27 H 0.01 0.34 7.21 -51.93 -0.37 -0.03 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.34 3.70 8.52 -39.29 -0.33 3.36 16 35 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.10 0.74 6.17 -51.93 -0.32 0.42 16 37 H 0.12 0.94 6.02 -52.49 -0.32 0.63 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.45 337.55 -10.92 -42.38 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.80 Total: 0.57 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -4.59 Total: -29.28 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.05 Total: -36.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.45 -10.92 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385776325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.802 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds