Wall clock time and date at job start Mon Mar 30 2020 07:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00101 * 179.97438 * 13 12 11 15 15 H 1.09002 * 115.55426 * 9.33127 * 14 13 12 16 16 C 1.53002 * 117.50231 * 223.62094 * 14 13 12 17 17 C 1.52993 * 60.00074 * 252.50997 * 16 14 13 18 18 H 1.08997 * 117.52153 * 107.48114 * 17 16 14 19 19 C 1.50706 * 117.49958 * 252.50710 * 17 16 14 20 20 C 1.38240 * 119.99460 * 8.35066 * 19 17 16 21 21 C 1.38236 * 119.99413 * 179.79102 * 20 19 17 22 22 C 1.38239 * 120.00325 * 0.43513 * 21 20 19 23 23 C 1.38235 * 119.99502 * 359.81565 * 22 21 20 24 24 C 1.38230 * 120.00533 * 359.97438 * 23 22 21 25 25 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 31 31 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 32 32 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 33 33 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 34 34 H 1.00894 * 111.00473 * 56.04826 * 13 12 11 35 35 H 1.09000 * 117.49552 * 359.97438 * 16 14 13 36 36 H 1.09001 * 117.50301 * 145.01946 * 16 14 13 37 37 H 1.08000 * 120.00172 * 359.97438 * 20 19 17 38 38 H 1.08004 * 119.99975 * 180.27743 * 21 20 19 39 39 H 1.07996 * 119.99946 * 179.83985 * 22 21 20 40 40 H 1.08005 * 119.99683 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00349 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 6 6.0616 -4.0789 -0.0221 13 7 7.5306 -4.0789 -0.0271 14 6 8.0570 -5.4502 -0.0319 15 1 7.3191 -6.2366 -0.1906 16 6 9.2306 -5.7598 0.8997 17 6 9.4566 -5.6677 -0.6107 18 1 9.9865 -4.7933 -0.9882 19 6 9.7094 -6.9529 -1.3561 20 6 9.5607 -8.1666 -0.7113 21 6 9.7884 -9.3455 -1.3962 22 6 10.1735 -9.3105 -2.7234 23 6 10.3272 -8.0967 -3.3667 24 6 10.0953 -6.9178 -2.6830 25 1 -0.4850 0.8400 -0.0004 26 1 3.8713 -0.6783 -0.8962 27 1 3.8786 -0.6819 0.8837 28 1 3.6619 -3.1521 0.8797 29 1 3.6545 -3.1485 -0.9003 30 1 5.9116 -2.1207 -0.9068 31 1 5.9183 -2.1245 0.8731 32 1 5.7016 -4.5950 0.8679 33 1 5.6950 -4.5905 -0.9120 34 1 7.8948 -3.5549 0.7544 35 1 9.6123 -4.9457 1.5159 36 1 9.2648 -6.7499 1.3543 37 1 9.2637 -8.1938 0.3267 38 1 9.6678 -10.2939 -0.8938 39 1 10.3539 -10.2315 -3.2578 40 1 10.6285 -8.0693 -4.4035 41 1 10.2158 -5.9694 -3.1855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385776325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:54 Heat of formation + Delta-G solvation = 10.963719 kcal Electronic energy + Delta-G solvation = -17682.179006 eV Core-core repulsion = 14946.862852 eV Total energy + Delta-G solvation = -2735.316154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59113 -38.65416 -36.93011 -35.11692 -33.57481 -31.81624 -31.32184 -29.72541 -26.04107 -24.70180 -23.36025 -22.72724 -22.56321 -21.65506 -21.03417 -18.85585 -18.06350 -16.91658 -16.63074 -16.34750 -16.06758 -15.67991 -15.56097 -14.88238 -14.74780 -14.42590 -14.18219 -13.79377 -13.70428 -13.54007 -13.33792 -12.93293 -12.78654 -12.47633 -12.17041 -12.12626 -11.91806 -11.79783 -11.71718 -11.42801 -11.36479 -11.28591 -11.09939 -10.76300 -9.81177 -9.67178 -9.05058 -8.29640 -6.33842 0.42353 0.51407 1.36272 1.37958 1.50582 2.36675 2.66249 3.01385 3.05643 3.15004 3.78322 3.94263 4.02120 4.04719 4.14287 4.16913 4.23942 4.28404 4.34410 4.46250 4.60776 4.62733 4.69163 4.74350 4.81282 4.90216 4.93027 5.10336 5.15334 5.19443 5.19577 5.21475 5.25938 5.57579 5.60731 5.64500 5.65063 5.68603 5.74942 6.05901 6.13942 6.29264 6.42129 6.74528 7.30968 8.87373 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.002590 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.603702 B =10809.031648 C =10928.712710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.013 4.013 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.071 3.929 13 N -0.664 5.664 14 C 0.031 3.969 15 H 0.103 0.897 16 C -0.181 4.181 17 C -0.112 4.112 18 H 0.111 0.889 19 C -0.062 4.062 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.130 4.130 25 H 0.266 0.734 26 H 0.017 0.983 27 H 0.020 0.980 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.350 0.650 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.874 -16.724 -1.390 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.058 4.058 13 N -0.294 5.294 14 C -0.080 4.080 15 H 0.121 0.879 16 C -0.220 4.220 17 C -0.131 4.131 18 H 0.129 0.871 19 C -0.062 4.062 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.170 0.830 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 25.755 -16.525 -2.064 30.670 hybrid contribution -0.622 0.508 0.722 1.080 sum 25.133 -16.017 -1.342 29.833 Atomic orbital electron populations 1.70083 1.08363 1.28183 1.52826 1.26100 0.95694 1.03780 0.94122 0.85587 0.79489 0.77911 0.79226 1.19192 1.20904 1.16836 1.21574 0.92452 0.93027 1.50246 0.95244 1.19548 0.93590 0.95435 0.96438 1.21289 0.94663 0.96910 1.00483 1.21493 0.94356 0.96237 1.02366 1.21888 0.86635 0.96798 1.00494 1.60107 1.07610 1.12008 1.49721 1.22506 0.90591 0.91015 1.03839 0.87867 1.23697 1.02010 1.04351 0.91918 1.21297 1.00270 0.96339 0.95209 0.87089 1.19336 0.99072 0.93610 0.94177 1.21283 1.01131 0.92060 1.00730 1.21445 0.99128 0.98683 0.95086 1.21476 0.99976 0.98626 0.95271 1.21431 0.99782 0.92421 1.00788 1.21210 1.00311 0.99166 0.94166 0.92510 0.96488 0.96139 0.93377 0.93608 0.91786 0.91637 0.94614 0.91641 0.83017 0.87239 0.87187 0.84982 0.84220 0.84181 0.84415 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 3 Si 0.95 45.13 27.46 68.60 1.88 47.02 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.24 -10.69 6.55 99.48 0.65 -10.03 16 7 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.73 5.15 30.59 0.16 -3.57 16 11 C -0.11 -3.22 5.47 30.59 0.17 -3.05 16 12 C 0.07 1.81 5.54 86.31 0.48 2.29 16 13 N -0.66 -14.69 6.78 -491.58 -3.33 -18.03 16 14 C 0.03 0.61 5.95 44.92 0.27 0.88 16 15 H 0.10 2.15 7.90 -2.39 -0.02 2.13 16 16 C -0.18 -2.73 9.56 30.59 0.29 -2.44 16 17 C -0.11 -2.04 5.97 -11.54 -0.07 -2.11 16 18 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.06 -1.17 5.61 -19.86 -0.11 -1.28 16 20 C -0.13 -2.26 9.30 22.27 0.21 -2.05 16 21 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 22 C -0.14 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 24 C -0.13 -2.42 9.74 22.27 0.22 -2.20 16 25 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 26 H 0.02 0.79 7.56 -2.39 -0.02 0.77 16 27 H 0.02 0.95 7.21 -2.38 -0.02 0.93 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.35 6.78 8.52 -89.70 -0.76 6.01 16 35 H 0.11 1.45 8.09 -2.39 -0.02 1.43 16 36 H 0.11 1.40 6.17 -2.39 -0.01 1.38 16 37 H 0.13 1.82 6.02 -2.91 -0.02 1.80 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.11 337.55 2.13 -65.98 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.17 Total: 16.27 kcal Atomic # 6 Polarization: -53.48 SS G_CDS: 3.11 Total: -50.37 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.03 Total: -78.90 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -68.11 2.13 -65.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385776325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.943 kcal (2) G-P(sol) polarization free energy of solvation -68.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds