Wall clock time and date at job start Mon Mar 30 2020 07:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 C 1.54341 * 110.82054 * 267.97174 * 14 13 12 16 16 C 1.51368 * 105.17089 * 215.42729 * 15 14 13 17 17 C 1.38500 * 130.39222 * 197.19470 * 16 15 14 18 18 C 1.38108 * 120.21279 * 179.97438 * 17 16 15 19 19 C 1.38251 * 119.93705 * 359.97438 * 18 17 16 20 20 C 1.38104 * 119.93547 * 359.97438 * 19 18 17 21 21 C 1.38220 * 109.75733 * 17.19086 * 16 15 14 22 22 C 1.51363 * 109.75933 * 0.02562 * 21 16 15 23 23 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 25 25 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 26 26 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 33 33 H 1.08997 * 110.73104 * 31.59446 * 14 13 12 34 34 H 1.09000 * 110.30837 * 334.35212 * 15 14 13 35 35 H 1.09006 * 110.30157 * 96.50669 * 15 14 13 36 36 H 1.07992 * 119.89188 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.02876 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.03331 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.89345 * 180.02562 * 20 19 18 40 40 H 1.09001 * 110.30809 * 223.89182 * 22 21 16 41 41 H 1.08994 * 110.39043 * 101.77686 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7401 -7.4222 -0.0018 14 6 2.6647 -8.5638 -0.0018 15 6 2.9702 -9.0223 -1.4435 16 6 3.1029 -10.5279 -1.3607 17 6 3.6697 -11.4290 -2.2467 18 6 3.6763 -12.7790 -1.9557 19 6 3.1160 -13.2334 -0.7763 20 6 2.5513 -12.3363 0.1088 21 6 2.5418 -10.9822 -0.1821 22 6 1.9932 -9.8131 0.6075 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8898 26 1 2.8726 -3.6046 0.8877 27 1 2.8713 -3.6039 -0.8923 28 1 0.8528 -5.0446 -0.8905 29 1 0.8546 -5.0450 0.8894 30 1 3.1007 -6.0922 -0.8922 31 1 3.1019 -6.0922 0.8878 32 1 1.1034 -7.4721 -0.7830 33 1 3.5822 -8.3172 0.5322 34 1 2.1504 -8.7508 -2.1086 35 1 3.9033 -8.5790 -1.7916 36 1 4.1079 -11.0748 -3.1679 37 1 4.1188 -13.4792 -2.6489 38 1 3.1200 -14.2888 -0.5474 39 1 2.1141 -12.6919 1.0301 40 1 2.2594 -9.9094 1.6601 41 1 0.9107 -9.7539 0.4957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385779947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:31 Heat of formation + Delta-G solvation = -3.073077 kcal Electronic energy + Delta-G solvation = -17903.552405 eV Core-core repulsion = 15167.627570 eV Total energy + Delta-G solvation = -2735.924835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37950 -37.32215 -35.15001 -33.35047 -31.77294 -31.63417 -28.92715 -27.48841 -26.98349 -24.22256 -22.30502 -21.48370 -21.14032 -20.85378 -19.88075 -16.58299 -16.31291 -16.08192 -15.53993 -15.25977 -15.00688 -14.47986 -14.18160 -13.61564 -13.44873 -13.06915 -13.01618 -12.80050 -12.49789 -12.30399 -11.77050 -11.62167 -11.41978 -11.26766 -11.18321 -11.01383 -10.97568 -10.55567 -10.47782 -10.40875 -9.61588 -9.24262 -9.04375 -8.98834 -8.72200 -8.40475 -8.31130 -5.96424 -3.98599 1.12351 1.15429 3.33589 3.39645 3.43223 3.52095 3.98545 4.23581 4.47972 4.52482 4.77488 4.78651 4.86926 4.95763 5.07700 5.28408 5.38849 5.39012 5.42161 5.50750 5.52788 5.61155 5.66683 5.80939 5.90211 5.93121 5.94378 6.17419 6.18809 6.26684 6.29230 6.44267 6.52458 6.77123 6.83990 6.97639 7.04910 7.24013 7.38718 7.72618 7.88601 8.04773 8.47518 9.08946 9.65154 11.14929 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.064267 B = 0.002495 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.579880 B =11217.529148 C =11423.395493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.681 5.681 14 C 0.090 3.910 15 C -0.112 4.112 16 C -0.094 4.094 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.093 4.093 22 C -0.074 4.074 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -25.836 -2.277 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.311 5.311 14 C -0.021 4.021 15 C -0.151 4.151 16 C -0.094 4.094 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.093 4.093 22 C -0.111 4.111 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.762 -25.690 -1.576 26.375 hybrid contribution 0.789 0.884 -1.043 1.578 sum 6.550 -24.806 -2.618 25.790 Atomic orbital electron populations 1.69970 1.06037 1.26509 1.51052 1.25041 0.94857 0.99243 0.95457 0.86607 0.79852 0.83560 0.78049 1.20717 1.21236 1.19910 1.21292 0.93007 0.91223 1.50278 0.92786 1.19094 0.94038 0.91354 0.97156 1.21587 0.99076 0.93955 1.00073 1.21644 0.97888 0.93855 1.02024 1.22124 0.96283 0.88356 1.00210 1.60535 1.19060 1.01439 1.50057 1.22252 0.95541 0.90699 0.93628 1.21888 1.02633 0.91408 0.99194 1.20541 0.98304 0.95543 0.95021 1.20660 1.00010 0.92822 0.99178 1.21021 1.00463 0.95273 0.97440 1.21032 0.99052 0.99388 0.94561 1.20646 1.00297 0.91944 0.99806 1.20691 0.98236 0.94218 0.96148 1.21074 1.01003 0.90100 0.98949 0.93057 0.96752 0.96587 0.93439 0.93689 0.92743 0.91610 0.95405 0.91174 0.83894 0.89288 0.89991 0.90721 0.86390 0.86048 0.86021 0.86234 0.90467 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.12 -1.96 5.47 -26.73 -0.15 -2.11 16 12 C 0.06 0.81 5.55 -3.82 -0.02 0.79 16 13 N -0.68 -8.17 6.35 -105.22 -0.67 -8.84 16 14 C 0.09 0.94 3.41 -66.29 -0.23 0.71 16 15 C -0.11 -1.11 6.45 -26.85 -0.17 -1.28 16 16 C -0.09 -0.97 6.14 -104.20 -0.64 -1.60 16 17 C -0.11 -1.02 10.04 -39.53 -0.40 -1.42 16 18 C -0.12 -1.05 10.05 -39.62 -0.40 -1.44 16 19 C -0.12 -1.02 10.05 -39.63 -0.40 -1.42 16 20 C -0.11 -1.00 10.04 -39.53 -0.40 -1.39 16 21 C -0.09 -0.94 6.14 -104.21 -0.64 -1.58 16 22 C -0.07 -0.73 6.49 -26.84 -0.17 -0.90 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.34 3.86 8.08 -39.29 -0.32 3.55 16 33 H 0.09 0.96 7.83 -51.93 -0.41 0.55 16 34 H 0.08 0.79 7.56 -51.93 -0.39 0.40 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -30.80 336.21 -11.18 -41.97 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.99 Total: -1.02 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -4.30 Total: -27.44 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.07 Total: -35.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.80 -11.18 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385779947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.900 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds