Wall clock time and date at job start Mon Mar 30 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 C 1.54341 * 110.82054 * 267.97174 * 14 13 12 16 16 C 1.51368 * 105.17089 * 215.42729 * 15 14 13 17 17 C 1.38500 * 130.39222 * 197.19470 * 16 15 14 18 18 C 1.38108 * 120.21279 * 179.97438 * 17 16 15 19 19 C 1.38251 * 119.93705 * 359.97438 * 18 17 16 20 20 C 1.38104 * 119.93547 * 359.97438 * 19 18 17 21 21 C 1.38220 * 109.75733 * 17.19086 * 16 15 14 22 22 C 1.51363 * 109.75933 * 0.02562 * 21 16 15 23 23 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 25 25 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 26 26 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 33 33 H 1.08997 * 110.73104 * 31.59446 * 14 13 12 34 34 H 1.09000 * 110.30837 * 334.35212 * 15 14 13 35 35 H 1.09006 * 110.30157 * 96.50669 * 15 14 13 36 36 H 1.07992 * 119.89188 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.02876 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.03331 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.89345 * 180.02562 * 20 19 18 40 40 H 1.09001 * 110.30809 * 223.89182 * 22 21 16 41 41 H 1.08994 * 110.39043 * 101.77686 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7401 -7.4222 -0.0018 14 6 2.6647 -8.5638 -0.0018 15 6 2.9702 -9.0223 -1.4435 16 6 3.1029 -10.5279 -1.3607 17 6 3.6697 -11.4290 -2.2467 18 6 3.6763 -12.7790 -1.9557 19 6 3.1160 -13.2334 -0.7763 20 6 2.5513 -12.3363 0.1088 21 6 2.5418 -10.9822 -0.1821 22 6 1.9932 -9.8131 0.6075 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8898 26 1 2.8726 -3.6046 0.8877 27 1 2.8713 -3.6039 -0.8923 28 1 0.8528 -5.0446 -0.8905 29 1 0.8546 -5.0450 0.8894 30 1 3.1007 -6.0922 -0.8922 31 1 3.1019 -6.0922 0.8878 32 1 1.1034 -7.4721 -0.7830 33 1 3.5822 -8.3172 0.5322 34 1 2.1504 -8.7508 -2.1086 35 1 3.9033 -8.5790 -1.7916 36 1 4.1079 -11.0748 -3.1679 37 1 4.1188 -13.4792 -2.6489 38 1 3.1200 -14.2888 -0.5474 39 1 2.1141 -12.6919 1.0301 40 1 2.2594 -9.9094 1.6601 41 1 0.9107 -9.7539 0.4957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385779947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:30 Heat of formation + Delta-G solvation = -19.310595 kcal Electronic energy + Delta-G solvation = -17904.256517 eV Core-core repulsion = 15167.627570 eV Total energy + Delta-G solvation = -2736.628947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09809 -38.25992 -36.56307 -34.98930 -33.38150 -32.31651 -30.31709 -28.31928 -28.14603 -25.94148 -23.20752 -22.83525 -21.98697 -21.81192 -21.30528 -18.42983 -17.27640 -17.07432 -16.56864 -16.46740 -16.14271 -15.85070 -15.37207 -14.62211 -14.44033 -14.20330 -14.06075 -13.81057 -13.70307 -13.62373 -13.18775 -13.06739 -12.80224 -12.55979 -12.20090 -12.14968 -12.09265 -12.06065 -12.00317 -11.66561 -11.36308 -11.29441 -10.96861 -10.55013 -9.71840 -9.42072 -9.35939 -8.19569 -6.30991 0.44325 0.47878 1.39630 1.41377 1.52571 2.41095 2.84419 3.06928 3.13051 3.49351 3.71764 4.07019 4.10688 4.16380 4.17380 4.24731 4.29046 4.35816 4.56096 4.61687 4.68904 4.71019 4.75729 4.84042 4.88103 4.92730 4.96496 5.06403 5.21182 5.22895 5.27869 5.30017 5.37767 5.54346 5.56374 5.61934 5.74111 5.79182 5.87766 6.09662 6.13375 6.26361 6.44399 6.86763 7.38256 8.92306 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.064267 B = 0.002495 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.579880 B =11217.529148 C =11423.395493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.071 3.929 13 N -0.684 5.684 14 C 0.091 3.909 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.069 4.069 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.346 0.654 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -26.807 -2.548 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.315 5.315 14 C -0.019 4.019 15 C -0.146 4.146 16 C -0.112 4.112 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.106 4.106 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.099 0.901 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.209 -26.682 -1.849 27.701 hybrid contribution 0.306 1.117 -0.965 1.508 sum 7.515 -25.565 -2.814 26.795 Atomic orbital electron populations 1.70107 1.07843 1.27753 1.51799 1.26036 0.95823 1.03517 0.94798 0.85426 0.78648 0.78316 0.78528 1.19692 1.20717 1.18701 1.21751 0.93568 0.92534 1.50350 0.92187 1.19031 0.94546 0.93333 0.94606 1.21395 0.97958 0.93680 1.00463 1.21467 0.98071 0.93338 1.01530 1.21886 0.95296 0.87896 1.00688 1.60477 1.19362 1.01148 1.50488 1.22229 0.95171 0.90240 0.94271 1.21808 1.02695 0.91512 0.98591 1.20684 0.99176 0.95760 0.95587 1.20916 1.00111 0.93336 0.99581 1.21362 1.00000 0.95324 0.97896 1.21380 0.98200 1.00552 0.94222 1.20923 1.00398 0.91737 1.00672 1.20811 0.98943 0.94786 0.96365 1.21001 1.00675 0.89856 0.99116 0.92788 0.99220 0.99268 0.93100 0.93075 0.92794 0.92620 0.94623 0.91005 0.83431 0.89441 0.89968 0.90547 0.85302 0.83813 0.83667 0.84855 0.90129 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 11 C -0.11 -3.56 5.47 30.59 0.17 -3.40 16 12 C 0.07 1.88 5.55 86.30 0.48 2.36 16 13 N -0.68 -15.79 6.35 -486.81 -3.09 -18.88 16 14 C 0.09 1.83 3.41 45.83 0.16 1.99 16 15 C -0.11 -2.02 6.45 30.52 0.20 -1.82 16 16 C -0.11 -2.19 6.14 -19.59 -0.12 -2.32 16 17 C -0.12 -2.12 10.04 22.30 0.22 -1.89 16 18 C -0.13 -1.90 10.05 22.24 0.22 -1.68 16 19 C -0.13 -1.83 10.05 22.24 0.22 -1.61 16 20 C -0.12 -2.01 10.04 22.30 0.22 -1.78 16 21 C -0.11 -2.11 6.14 -19.60 -0.12 -2.23 16 22 C -0.07 -1.31 6.49 30.52 0.20 -1.11 16 23 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 32 H 0.35 7.53 8.08 -89.70 -0.72 6.81 16 33 H 0.09 1.79 7.83 -2.39 -0.02 1.77 16 34 H 0.08 1.52 7.56 -2.39 -0.02 1.50 16 35 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 Total: -1.00 -65.93 336.21 2.33 -63.59 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.26 Total: 13.41 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 2.85 Total: -47.26 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -2.81 Total: -76.67 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.93 2.33 -63.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385779947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.283 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds