Wall clock time and date at job start Mon Mar 30 2020 07:11:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86793 * 120.00181 * 2 1
4 4 H 1.48499 * 109.47196 * 239.99921 * 3 2 1
5 5 H 1.48506 * 109.47106 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47386 * 119.99517 * 3 2 1
7 7 C 1.37876 * 119.99589 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99647 * 180.02562 * 7 2 1
9 9 C 1.50695 * 120.00160 * 0.02562 * 7 2 1
10 10 C 1.53002 * 109.47104 * 180.02562 * 9 7 2
11 11 C 1.53006 * 109.47140 * 179.97438 * 10 9 7
12 12 C 1.53004 * 109.46801 * 179.97438 * 11 10 9
13 13 N 1.46897 * 109.46684 * 180.02562 * 12 11 10
14 14 C 1.46905 * 110.99986 * 179.97438 * 13 12 11
15 15 C 1.53004 * 109.47064 * 179.97438 * 14 13 12
16 16 H 1.08997 * 112.88912 * 313.33737 * 15 14 13
17 17 C 1.52257 * 113.58717 * 182.16369 * 15 14 13
18 18 C 1.50560 * 87.22876 * 245.41606 * 17 15 14
19 19 C 1.38814 * 147.30115 * 180.02562 * 18 17 15
20 20 C 1.38061 * 120.09132 * 179.97438 * 19 18 17
21 21 C 1.38230 * 119.98381 * 359.72389 * 20 19 18
22 22 C 1.38072 * 119.97919 * 0.55473 * 21 20 19
23 23 C 1.37716 * 92.77357 * 359.97438 * 18 17 15
24 24 H 0.97006 * 119.99577 * 0.02562 * 1 2 3
25 25 H 1.08993 * 109.47485 * 60.00184 * 9 7 2
26 26 H 1.09004 * 109.46791 * 299.99556 * 9 7 2
27 27 H 1.08997 * 109.47444 * 59.99733 * 10 9 7
28 28 H 1.08999 * 109.46883 * 299.99829 * 10 9 7
29 29 H 1.08997 * 109.47004 * 59.99667 * 11 10 9
30 30 H 1.08999 * 109.47259 * 299.99803 * 11 10 9
31 31 H 1.08993 * 109.46986 * 60.00061 * 12 11 10
32 32 H 1.08999 * 109.47186 * 300.00011 * 12 11 10
33 33 H 1.00901 * 111.00272 * 303.95752 * 13 12 11
34 34 H 1.08998 * 109.46699 * 60.00313 * 14 13 12
35 35 H 1.08996 * 109.46813 * 299.99832 * 14 13 12
36 36 H 1.08996 * 113.59041 * 130.82949 * 17 15 14
37 37 H 1.09001 * 113.66259 * 0.02562 * 17 15 14
38 38 H 1.08003 * 119.95497 * 0.02562 * 19 18 17
39 39 H 1.08002 * 120.01010 * 180.02562 * 20 19 18
40 40 H 1.08000 * 120.01592 * 180.29156 * 21 20 19
41 41 H 1.08002 * 119.95823 * 179.72636 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6964 1.2126
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0018
11 6 1.4801 -4.9871 0.0025
12 6 2.4744 -6.1501 0.0031
13 7 1.7398 -7.4222 0.0031
14 6 2.6642 -8.5639 0.0031
15 6 1.8640 -9.8680 0.0038
16 1 1.0552 -9.8688 0.7344
17 6 2.7339 -11.1165 0.0565
18 6 2.2228 -11.4421 -1.3218
19 6 2.2426 -12.3184 -2.3982
20 6 1.4748 -12.0591 -3.5160
21 6 0.6807 -10.9286 -3.5616
22 6 0.6646 -10.0532 -2.4940
23 6 1.4355 -10.3132 -1.3693
24 1 -0.4850 0.8401 -0.0004
25 1 0.6247 -2.5571 -0.8896
26 1 0.6240 -2.5566 0.8904
27 1 2.8712 -3.6040 0.8922
28 1 2.8725 -3.6048 -0.8877
29 1 0.8538 -5.0455 -0.8877
30 1 0.8530 -5.0442 0.8922
31 1 3.1009 -6.0918 0.8931
32 1 3.1011 -6.0928 -0.8869
33 1 1.1030 -7.4721 0.7842
34 1 3.2921 -8.5229 0.8931
35 1 3.2921 -8.5229 -0.8869
36 1 2.4235 -11.8326 0.8173
37 1 3.8026 -10.9042 0.0867
38 1 2.8587 -13.2046 -2.3609
39 1 1.4909 -12.7420 -4.3526
40 1 0.0763 -10.7277 -4.4338
41 1 0.0474 -9.1678 -2.5318
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385812708.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:11:47
Heat of formation + Delta-G solvation = 35.793800 kcal
Electronic energy + Delta-G solvation = -17826.422815 eV
Core-core repulsion = 15092.183374 eV
Total energy + Delta-G solvation = -2734.239441 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.86780 -37.02693 -35.64413 -33.89458 -32.07825 -30.85075 -29.09757 -27.48836
-25.82713 -23.98747 -23.02762 -21.51772 -21.31656 -20.08818 -19.75418 -16.98485
-16.22083 -15.78140 -15.69837 -15.27086 -14.67892 -14.52553 -14.32641 -14.10980
-13.29351 -13.16018 -13.01355 -12.41164 -12.32122 -12.24388 -12.01351 -11.69301
-11.49125 -11.24310 -11.01300 -10.90244 -10.57629 -10.49749 -10.41550 -10.39084
-9.60153 -9.23420 -8.99567 -8.92539 -8.77950 -8.34710 -8.30022 -5.95697
-3.97919 1.19192 1.26066 3.35515 3.39619 3.42243 3.62062 3.93590
4.08957 4.28629 4.49008 4.60944 4.81170 4.89640 4.99238 5.12042
5.29508 5.35789 5.39364 5.41089 5.52126 5.54772 5.56619 5.63157
5.74064 5.92954 5.97452 5.99707 6.18057 6.25557 6.27592 6.38408
6.53979 6.64654 6.85275 6.86844 6.98585 7.05735 7.25333 7.42978
7.73142 7.89563 8.05554 8.48337 9.09442 9.65719 11.15663
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.040382 B = 0.002620 C = 0.002535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.215566 B =10685.596149 C =11043.446936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.521 4.521
8 H 0.053 0.947
9 C 0.021 3.979
10 C -0.109 4.109
11 C -0.115 4.115
12 C 0.060 3.940
13 N -0.689 5.689
14 C 0.075 3.925
15 C -0.044 4.044
16 H 0.096 0.904
17 C -0.070 4.070
18 C -0.139 4.139
19 C -0.099 4.099
20 C -0.122 4.122
21 C -0.121 4.121
22 C -0.084 4.084
23 C -0.105 4.105
24 H 0.260 0.740
25 H 0.016 0.984
26 H 0.014 0.986
27 H 0.044 0.956
28 H 0.047 0.953
29 H 0.064 0.936
30 H 0.054 0.946
31 H 0.026 0.974
32 H 0.068 0.932
33 H 0.339 0.661
34 H 0.035 0.965
35 H 0.074 0.926
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.115 0.885
39 H 0.123 0.877
40 H 0.124 0.876
41 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.876 -25.698 -2.007 26.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.720 3.280
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.559 4.559
8 H 0.072 0.928
9 C -0.016 4.016
10 C -0.147 4.147
11 C -0.153 4.153
12 C -0.069 4.069
13 N -0.320 5.320
14 C -0.055 4.055
15 C -0.062 4.062
16 H 0.115 0.885
17 C -0.107 4.107
18 C -0.139 4.139
19 C -0.118 4.118
20 C -0.140 4.140
21 C -0.139 4.139
22 C -0.103 4.103
23 C -0.105 4.105
24 H 0.070 0.930
25 H 0.034 0.966
26 H 0.032 0.968
27 H 0.063 0.937
28 H 0.065 0.935
29 H 0.083 0.917
30 H 0.073 0.927
31 H 0.044 0.956
32 H 0.086 0.914
33 H 0.157 0.843
34 H 0.053 0.947
35 H 0.092 0.908
36 H 0.108 0.892
37 H 0.108 0.892
38 H 0.133 0.867
39 H 0.141 0.859
40 H 0.142 0.858
41 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 3.640 -25.582 -2.708 25.981
hybrid contribution 0.716 0.967 0.764 1.426
sum 4.357 -24.615 -1.944 25.073
Atomic orbital electron populations
1.69964 1.06044 1.26617 1.50972 1.25036 0.94855 0.99224 0.95438
0.86667 0.79583 0.83209 0.78581 1.20262 1.21300 1.20287 1.21257
0.92975 0.91247 1.50411 0.92840 1.19085 0.94025 0.91326 0.97140
1.21590 0.99081 0.93986 1.00049 1.21634 0.97870 0.93829 1.01980
1.22068 0.96220 0.88474 1.00090 1.60449 1.19860 1.01608 1.50068
1.21800 0.94068 0.88833 1.00789 1.21095 0.97570 0.94205 0.93334
0.88546 1.21512 1.00431 0.96169 0.92637 1.21866 0.99413 0.96357
0.96310 1.20373 0.99908 0.98976 0.92498 1.20957 0.97382 0.97929
0.97771 1.21027 0.99662 0.94796 0.98403 1.20565 0.98507 0.99274
0.91905 1.21687 0.96755 0.96358 0.95738 0.92999 0.96611 0.96751
0.93701 0.93469 0.91675 0.92743 0.95567 0.91351 0.84307 0.94666
0.90789 0.89216 0.89171 0.86741 0.85949 0.85790 0.85895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16
4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16
8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16
10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16
11 C -0.12 -1.99 5.48 -26.73 -0.15 -2.14 16
12 C 0.06 0.86 5.69 -3.82 -0.02 0.84 16
13 N -0.69 -8.59 6.50 -113.78 -0.74 -9.33 16
14 C 0.07 0.79 5.40 -3.82 -0.02 0.77 16
15 C -0.04 -0.41 4.03 -92.51 -0.37 -0.79 16
16 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
17 C -0.07 -0.57 7.78 -28.62 -0.22 -0.79 16
18 C -0.14 -1.43 7.42 -104.96 -0.78 -2.21 16
19 C -0.10 -0.95 10.06 -39.43 -0.40 -1.35 16
20 C -0.12 -1.13 10.04 -39.65 -0.40 -1.53 16
21 C -0.12 -1.20 10.04 -39.65 -0.40 -1.60 16
22 C -0.08 -0.96 10.06 -39.43 -0.40 -1.36 16
23 C -0.11 -1.19 6.86 -104.96 -0.72 -1.91 16
24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16
27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.34 3.88 8.73 -39.29 -0.34 3.54 16
34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
35 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16
36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.09 0.65 7.98 -51.93 -0.41 0.23 16
38 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16
39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16
LS Contribution 340.79 15.07 5.14 5.14
Total: -1.00 -31.45 340.79 -11.51 -42.95
By element:
Atomic # 1 Polarization: 6.05 SS G_CDS: -7.06 Total: -1.01 kcal
Atomic # 6 Polarization: -23.41 SS G_CDS: -4.56 Total: -27.97 kcal
Atomic # 7 Polarization: -36.10 SS G_CDS: 0.00 Total: -36.11 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -31.45 -11.51 -42.95 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385812708.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.748 kcal
(2) G-P(sol) polarization free energy of solvation -31.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds