Wall clock time and date at job start Mon Mar 30 2020 07:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48499 * 109.47196 * 239.99921 * 3 2 1 5 5 H 1.48506 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47386 * 119.99517 * 3 2 1 7 7 C 1.37876 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47140 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46801 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46684 * 180.02562 * 12 11 10 14 14 C 1.46905 * 110.99986 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47064 * 179.97438 * 14 13 12 16 16 H 1.08997 * 112.88912 * 313.33737 * 15 14 13 17 17 C 1.52257 * 113.58717 * 182.16369 * 15 14 13 18 18 C 1.50560 * 87.22876 * 245.41606 * 17 15 14 19 19 C 1.38814 * 147.30115 * 180.02562 * 18 17 15 20 20 C 1.38061 * 120.09132 * 179.97438 * 19 18 17 21 21 C 1.38230 * 119.98381 * 359.72389 * 20 19 18 22 22 C 1.38072 * 119.97919 * 0.55473 * 21 20 19 23 23 C 1.37716 * 92.77357 * 359.97438 * 18 17 15 24 24 H 0.97006 * 119.99577 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47485 * 60.00184 * 9 7 2 26 26 H 1.09004 * 109.46791 * 299.99556 * 9 7 2 27 27 H 1.08997 * 109.47444 * 59.99733 * 10 9 7 28 28 H 1.08999 * 109.46883 * 299.99829 * 10 9 7 29 29 H 1.08997 * 109.47004 * 59.99667 * 11 10 9 30 30 H 1.08999 * 109.47259 * 299.99803 * 11 10 9 31 31 H 1.08993 * 109.46986 * 60.00061 * 12 11 10 32 32 H 1.08999 * 109.47186 * 300.00011 * 12 11 10 33 33 H 1.00901 * 111.00272 * 303.95752 * 13 12 11 34 34 H 1.08998 * 109.46699 * 60.00313 * 14 13 12 35 35 H 1.08996 * 109.46813 * 299.99832 * 14 13 12 36 36 H 1.08996 * 113.59041 * 130.82949 * 17 15 14 37 37 H 1.09001 * 113.66259 * 0.02562 * 17 15 14 38 38 H 1.08003 * 119.95497 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.01010 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.01592 * 180.29156 * 21 20 19 41 41 H 1.08002 * 119.95823 * 179.72636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4744 -6.1501 0.0031 13 7 1.7398 -7.4222 0.0031 14 6 2.6642 -8.5639 0.0031 15 6 1.8640 -9.8680 0.0038 16 1 1.0552 -9.8688 0.7344 17 6 2.7339 -11.1165 0.0565 18 6 2.2228 -11.4421 -1.3218 19 6 2.2426 -12.3184 -2.3982 20 6 1.4748 -12.0591 -3.5160 21 6 0.6807 -10.9286 -3.5616 22 6 0.6646 -10.0532 -2.4940 23 6 1.4355 -10.3132 -1.3693 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8538 -5.0455 -0.8877 30 1 0.8530 -5.0442 0.8922 31 1 3.1009 -6.0918 0.8931 32 1 3.1011 -6.0928 -0.8869 33 1 1.1030 -7.4721 0.7842 34 1 3.2921 -8.5229 0.8931 35 1 3.2921 -8.5229 -0.8869 36 1 2.4235 -11.8326 0.8173 37 1 3.8026 -10.9042 0.0867 38 1 2.8587 -13.2046 -2.3609 39 1 1.4909 -12.7420 -4.3526 40 1 0.0763 -10.7277 -4.4338 41 1 0.0474 -9.1678 -2.5318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385812708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:47 Heat of formation + Delta-G solvation = 35.793800 kcal Electronic energy + Delta-G solvation = -17826.422815 eV Core-core repulsion = 15092.183374 eV Total energy + Delta-G solvation = -2734.239441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86780 -37.02693 -35.64413 -33.89458 -32.07825 -30.85075 -29.09757 -27.48836 -25.82713 -23.98747 -23.02762 -21.51772 -21.31656 -20.08818 -19.75418 -16.98485 -16.22083 -15.78140 -15.69837 -15.27086 -14.67892 -14.52553 -14.32641 -14.10980 -13.29351 -13.16018 -13.01355 -12.41164 -12.32122 -12.24388 -12.01351 -11.69301 -11.49125 -11.24310 -11.01300 -10.90244 -10.57629 -10.49749 -10.41550 -10.39084 -9.60153 -9.23420 -8.99567 -8.92539 -8.77950 -8.34710 -8.30022 -5.95697 -3.97919 1.19192 1.26066 3.35515 3.39619 3.42243 3.62062 3.93590 4.08957 4.28629 4.49008 4.60944 4.81170 4.89640 4.99238 5.12042 5.29508 5.35789 5.39364 5.41089 5.52126 5.54772 5.56619 5.63157 5.74064 5.92954 5.97452 5.99707 6.18057 6.25557 6.27592 6.38408 6.53979 6.64654 6.85275 6.86844 6.98585 7.05735 7.25333 7.42978 7.73142 7.89563 8.05554 8.48337 9.09442 9.65719 11.15663 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040382 B = 0.002620 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.215566 B =10685.596149 C =11043.446936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.689 5.689 14 C 0.075 3.925 15 C -0.044 4.044 16 H 0.096 0.904 17 C -0.070 4.070 18 C -0.139 4.139 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.084 4.084 23 C -0.105 4.105 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.339 0.661 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -25.698 -2.007 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.055 4.055 15 C -0.062 4.062 16 H 0.115 0.885 17 C -0.107 4.107 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.103 4.103 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.640 -25.582 -2.708 25.981 hybrid contribution 0.716 0.967 0.764 1.426 sum 4.357 -24.615 -1.944 25.073 Atomic orbital electron populations 1.69964 1.06044 1.26617 1.50972 1.25036 0.94855 0.99224 0.95438 0.86667 0.79583 0.83209 0.78581 1.20262 1.21300 1.20287 1.21257 0.92975 0.91247 1.50411 0.92840 1.19085 0.94025 0.91326 0.97140 1.21590 0.99081 0.93986 1.00049 1.21634 0.97870 0.93829 1.01980 1.22068 0.96220 0.88474 1.00090 1.60449 1.19860 1.01608 1.50068 1.21800 0.94068 0.88833 1.00789 1.21095 0.97570 0.94205 0.93334 0.88546 1.21512 1.00431 0.96169 0.92637 1.21866 0.99413 0.96357 0.96310 1.20373 0.99908 0.98976 0.92498 1.20957 0.97382 0.97929 0.97771 1.21027 0.99662 0.94796 0.98403 1.20565 0.98507 0.99274 0.91905 1.21687 0.96755 0.96358 0.95738 0.92999 0.96611 0.96751 0.93701 0.93469 0.91675 0.92743 0.95567 0.91351 0.84307 0.94666 0.90789 0.89216 0.89171 0.86741 0.85949 0.85790 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.12 -1.99 5.48 -26.73 -0.15 -2.14 16 12 C 0.06 0.86 5.69 -3.82 -0.02 0.84 16 13 N -0.69 -8.59 6.50 -113.78 -0.74 -9.33 16 14 C 0.07 0.79 5.40 -3.82 -0.02 0.77 16 15 C -0.04 -0.41 4.03 -92.51 -0.37 -0.79 16 16 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.07 -0.57 7.78 -28.62 -0.22 -0.79 16 18 C -0.14 -1.43 7.42 -104.96 -0.78 -2.21 16 19 C -0.10 -0.95 10.06 -39.43 -0.40 -1.35 16 20 C -0.12 -1.13 10.04 -39.65 -0.40 -1.53 16 21 C -0.12 -1.20 10.04 -39.65 -0.40 -1.60 16 22 C -0.08 -0.96 10.06 -39.43 -0.40 -1.36 16 23 C -0.11 -1.19 6.86 -104.96 -0.72 -1.91 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.34 3.88 8.73 -39.29 -0.34 3.54 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.65 7.98 -51.93 -0.41 0.23 16 38 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -31.45 340.79 -11.51 -42.95 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.06 Total: -1.01 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -4.56 Total: -27.97 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.00 Total: -36.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.45 -11.51 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385812708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.748 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds