Wall clock time and date at job start Mon Mar 30 2020 07:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48499 * 109.47196 * 239.99921 * 3 2 1 5 5 H 1.48506 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47386 * 119.99517 * 3 2 1 7 7 C 1.37876 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47140 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46801 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46684 * 180.02562 * 12 11 10 14 14 C 1.46905 * 110.99986 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47064 * 179.97438 * 14 13 12 16 16 H 1.08997 * 112.88912 * 313.33737 * 15 14 13 17 17 C 1.52257 * 113.58717 * 182.16369 * 15 14 13 18 18 C 1.50560 * 87.22876 * 245.41606 * 17 15 14 19 19 C 1.38814 * 147.30115 * 180.02562 * 18 17 15 20 20 C 1.38061 * 120.09132 * 179.97438 * 19 18 17 21 21 C 1.38230 * 119.98381 * 359.72389 * 20 19 18 22 22 C 1.38072 * 119.97919 * 0.55473 * 21 20 19 23 23 C 1.37716 * 92.77357 * 359.97438 * 18 17 15 24 24 H 0.97006 * 119.99577 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47485 * 60.00184 * 9 7 2 26 26 H 1.09004 * 109.46791 * 299.99556 * 9 7 2 27 27 H 1.08997 * 109.47444 * 59.99733 * 10 9 7 28 28 H 1.08999 * 109.46883 * 299.99829 * 10 9 7 29 29 H 1.08997 * 109.47004 * 59.99667 * 11 10 9 30 30 H 1.08999 * 109.47259 * 299.99803 * 11 10 9 31 31 H 1.08993 * 109.46986 * 60.00061 * 12 11 10 32 32 H 1.08999 * 109.47186 * 300.00011 * 12 11 10 33 33 H 1.00901 * 111.00272 * 303.95752 * 13 12 11 34 34 H 1.08998 * 109.46699 * 60.00313 * 14 13 12 35 35 H 1.08996 * 109.46813 * 299.99832 * 14 13 12 36 36 H 1.08996 * 113.59041 * 130.82949 * 17 15 14 37 37 H 1.09001 * 113.66259 * 0.02562 * 17 15 14 38 38 H 1.08003 * 119.95497 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.01010 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.01592 * 180.29156 * 21 20 19 41 41 H 1.08002 * 119.95823 * 179.72636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4744 -6.1501 0.0031 13 7 1.7398 -7.4222 0.0031 14 6 2.6642 -8.5639 0.0031 15 6 1.8640 -9.8680 0.0038 16 1 1.0552 -9.8688 0.7344 17 6 2.7339 -11.1165 0.0565 18 6 2.2228 -11.4421 -1.3218 19 6 2.2426 -12.3184 -2.3982 20 6 1.4748 -12.0591 -3.5160 21 6 0.6807 -10.9286 -3.5616 22 6 0.6646 -10.0532 -2.4940 23 6 1.4355 -10.3132 -1.3693 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8538 -5.0455 -0.8877 30 1 0.8530 -5.0442 0.8922 31 1 3.1009 -6.0918 0.8931 32 1 3.1011 -6.0928 -0.8869 33 1 1.1030 -7.4721 0.7842 34 1 3.2921 -8.5229 0.8931 35 1 3.2921 -8.5229 -0.8869 36 1 2.4235 -11.8326 0.8173 37 1 3.8026 -10.9042 0.0867 38 1 2.8587 -13.2046 -2.3609 39 1 1.4909 -12.7420 -4.3526 40 1 0.0763 -10.7277 -4.4338 41 1 0.0474 -9.1678 -2.5318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385812708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:47 Heat of formation + Delta-G solvation = 18.859686 kcal Electronic energy + Delta-G solvation = -17827.157133 eV Core-core repulsion = 15092.183374 eV Total energy + Delta-G solvation = -2734.973759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58754 -38.06781 -36.72903 -35.55568 -33.90040 -31.63387 -30.55209 -28.57319 -27.02418 -25.46368 -23.92256 -22.86618 -22.23933 -21.70006 -20.59076 -18.43640 -17.73688 -16.86953 -16.55972 -16.46653 -16.10454 -15.72099 -15.41030 -15.15317 -14.58552 -14.14365 -14.03609 -13.86769 -13.65549 -13.43459 -13.01039 -12.94849 -12.82977 -12.64705 -12.37740 -12.25181 -12.11125 -12.09439 -11.64619 -11.37792 -11.32141 -11.22606 -10.94668 -10.55243 -9.69449 -9.54305 -9.28735 -8.20059 -6.31783 0.45120 0.49718 1.39165 1.42820 1.50777 2.40796 2.86700 3.08330 3.12470 3.33672 3.58517 3.83696 4.00587 4.17539 4.20768 4.23757 4.29214 4.39636 4.55223 4.58877 4.65165 4.71926 4.77342 4.81206 4.86437 4.90072 4.94230 5.04740 5.23534 5.25024 5.26236 5.30109 5.35708 5.53035 5.54723 5.63688 5.77750 5.86521 5.89212 6.08504 6.14916 6.25541 6.48910 6.85701 7.37500 8.91728 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040382 B = 0.002620 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.215566 B =10685.596149 C =11043.446936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.073 3.927 13 N -0.698 5.698 14 C 0.080 3.920 15 C -0.042 4.042 16 H 0.103 0.897 17 C -0.059 4.059 18 C -0.151 4.151 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.109 4.109 23 C -0.134 4.134 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.346 0.654 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -26.722 -1.615 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.056 4.056 13 N -0.329 5.329 14 C -0.049 4.049 15 C -0.060 4.060 16 H 0.121 0.879 17 C -0.096 4.096 18 C -0.151 4.151 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.134 4.134 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.164 0.836 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.368 -26.626 -2.313 27.260 hybrid contribution 0.123 1.245 0.604 1.389 sum 5.491 -25.381 -1.709 26.025 Atomic orbital electron populations 1.70106 1.07881 1.27853 1.51691 1.26039 0.95818 1.03534 0.94717 0.85476 0.78262 0.77917 0.79248 1.19157 1.20763 1.19006 1.21723 0.93576 0.92541 1.50565 0.92171 1.19019 0.94515 0.93318 0.94572 1.21398 0.97971 0.93695 1.00429 1.21460 0.98053 0.93380 1.01424 1.21815 0.95223 0.88128 1.00451 1.60366 1.20414 1.01443 1.50722 1.21772 0.93840 0.88428 1.00898 1.21119 0.97946 0.94290 0.92655 0.87932 1.21530 1.00790 0.95413 0.91827 1.22258 0.99296 0.96056 0.97469 1.20728 1.00004 0.99588 0.92325 1.21304 0.96647 0.97866 0.98533 1.21284 1.00101 0.94965 0.98544 1.20710 0.99337 0.99660 0.93049 1.22028 0.97366 0.97492 0.96480 0.92754 0.99405 0.99151 0.92947 0.93274 0.92975 0.92624 0.94492 0.91669 0.83568 0.93019 0.91976 0.87305 0.87961 0.84634 0.83513 0.84380 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -4.07 5.15 30.60 0.16 -3.92 16 11 C -0.11 -3.64 5.48 30.60 0.17 -3.47 16 12 C 0.07 2.00 5.69 86.30 0.49 2.49 16 13 N -0.70 -16.73 6.50 -513.89 -3.34 -20.07 16 14 C 0.08 1.56 5.40 86.30 0.47 2.02 16 15 C -0.04 -0.74 4.03 -12.02 -0.05 -0.78 16 16 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.06 -0.81 7.78 29.37 0.23 -0.58 16 18 C -0.15 -2.88 7.42 -20.09 -0.15 -3.03 16 19 C -0.11 -1.89 10.06 22.37 0.22 -1.67 16 20 C -0.13 -2.14 10.04 22.23 0.22 -1.92 16 21 C -0.13 -2.57 10.04 22.23 0.22 -2.34 16 22 C -0.11 -2.55 10.06 22.37 0.22 -2.32 16 23 C -0.13 -2.95 6.86 -20.08 -0.14 -3.09 16 24 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.35 7.53 8.73 -89.69 -0.78 6.75 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.37 8.04 -2.39 -0.02 1.36 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.18 7.98 -2.39 -0.02 1.16 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.11 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -68.14 340.79 2.08 -66.05 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.20 Total: 13.84 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 2.92 Total: -48.77 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.06 Total: -78.18 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.14 2.08 -66.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385812708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.912 kcal (2) G-P(sol) polarization free energy of solvation -68.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds