Wall clock time and date at job start Mon Mar 30 2020 07:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00311 * 2 1 4 4 H 1.48492 * 109.47495 * 270.00075 * 3 2 1 5 5 H 1.48506 * 109.47176 * 30.00471 * 3 2 1 6 6 H 1.48505 * 109.46979 * 150.00048 * 3 2 1 7 7 C 1.37880 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99823 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47081 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46739 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46429 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99794 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47491 * 180.02562 * 14 13 12 16 16 H 1.09007 * 112.88542 * 46.66278 * 15 14 13 17 17 C 1.52257 * 113.59329 * 177.83715 * 15 14 13 18 18 C 1.50560 * 87.22876 * 114.58820 * 17 15 14 19 19 C 1.38814 * 147.30115 * 179.97438 * 18 17 15 20 20 C 1.38061 * 120.09140 * 180.02562 * 19 18 17 21 21 C 1.38241 * 119.98340 * 359.70470 * 20 19 18 22 22 C 1.38067 * 119.97557 * 0.59769 * 21 20 19 23 23 C 1.37716 * 92.77357 * 359.97438 * 18 17 15 24 24 H 0.97002 * 119.99704 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47018 * 60.00007 * 9 7 2 26 26 H 1.08996 * 109.47575 * 300.00052 * 9 7 2 27 27 H 1.09002 * 109.46942 * 60.00250 * 10 9 7 28 28 H 1.08998 * 109.47650 * 299.99974 * 10 9 7 29 29 H 1.08994 * 109.46724 * 60.00378 * 11 10 9 30 30 H 1.08998 * 109.46845 * 300.00452 * 11 10 9 31 31 H 1.08992 * 109.46824 * 60.00563 * 12 11 10 32 32 H 1.08995 * 109.47199 * 299.99832 * 12 11 10 33 33 H 1.00903 * 110.99937 * 56.05093 * 13 12 11 34 34 H 1.08996 * 109.47353 * 59.99772 * 14 13 12 35 35 H 1.09009 * 109.47219 * 300.00403 * 14 13 12 36 36 H 1.09000 * 113.58948 * 359.97438 * 17 15 14 37 37 H 1.09001 * 113.66259 * 229.18225 * 17 15 14 38 38 H 1.08003 * 119.95522 * 0.03636 * 19 18 17 39 39 H 1.08003 * 120.01018 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.01102 * 180.28280 * 21 20 19 41 41 H 1.08002 * 119.95461 * 179.69292 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 6 6.0613 -4.0794 -0.0015 13 7 7.5303 -4.0794 -0.0020 14 6 8.0567 -5.4508 -0.0032 15 6 9.5861 -5.4102 -0.0031 16 1 9.9915 -4.7105 0.7279 17 6 10.2323 -6.7878 0.0485 18 6 10.7694 -6.5070 -1.3298 19 6 11.5180 -6.9615 -2.4068 20 6 11.6771 -6.1662 -3.5240 21 6 11.0852 -4.9179 -3.5734 22 6 10.3456 -4.4622 -2.5003 23 6 10.1844 -5.2611 -1.3767 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6576 -3.1507 -0.8908 28 1 3.6584 -3.1504 0.8892 29 1 5.9147 -2.1230 0.8890 30 1 5.9148 -2.1230 -0.8909 31 1 5.6980 -4.5927 -0.8916 32 1 5.6979 -4.5935 0.8883 33 1 7.8922 -3.5535 0.7794 34 1 7.7068 -5.9736 -0.8933 35 1 7.7074 -5.9748 0.8866 36 1 9.5130 -7.6062 0.0784 37 1 11.0081 -6.8790 0.8087 38 1 11.9766 -7.9387 -2.3707 39 1 12.2595 -6.5213 -4.3614 40 1 11.2056 -4.2973 -4.4490 41 1 9.8875 -3.4849 -2.5372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385812712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:49 Heat of formation + Delta-G solvation = 39.232655 kcal Electronic energy + Delta-G solvation = -17878.815843 eV Core-core repulsion = 15144.725522 eV Total energy + Delta-G solvation = -2734.090321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90471 -37.09305 -35.72074 -33.97633 -32.12107 -30.90047 -29.42068 -27.67441 -25.98022 -23.97458 -23.02639 -21.54355 -21.23206 -20.05711 -19.82601 -17.02612 -16.63452 -15.88100 -15.74175 -15.32347 -14.73399 -14.49455 -14.26490 -14.14821 -13.30955 -13.19701 -13.08677 -12.64709 -12.44136 -12.30866 -12.14496 -11.76416 -11.66288 -11.38609 -11.16936 -10.94894 -10.75278 -10.56305 -10.47961 -9.85469 -9.65432 -9.45790 -9.12350 -8.96542 -8.81747 -8.50135 -8.40641 -6.00828 -3.98304 1.15721 1.22509 3.33833 3.40697 3.45273 3.58475 3.88932 4.04587 4.25008 4.48866 4.56123 4.76530 4.86335 4.95600 5.07711 5.24279 5.32246 5.32844 5.34888 5.46266 5.49427 5.51797 5.57591 5.70495 5.83255 5.93400 5.95555 6.06144 6.14902 6.22164 6.34767 6.39793 6.60826 6.69052 6.79007 6.83209 6.91306 7.08815 7.35600 7.37772 7.50374 7.84549 8.58592 9.04539 9.62231 11.12826 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035484 B = 0.002806 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.892336 B = 9974.584682 C =10382.116202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.060 3.940 13 N -0.689 5.689 14 C 0.074 3.926 15 C -0.043 4.043 16 H 0.096 0.904 17 C -0.070 4.070 18 C -0.139 4.139 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.085 4.085 23 C -0.106 4.106 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.339 0.661 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.155 -13.746 -2.009 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.055 4.055 15 C -0.062 4.062 16 H 0.114 0.886 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.103 4.103 23 C -0.106 4.106 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 25.041 -13.562 -2.707 28.606 hybrid contribution 0.158 0.666 0.741 1.009 sum 25.199 -12.895 -1.967 28.375 Atomic orbital electron populations 1.69926 1.06318 1.26812 1.51470 1.25057 0.94748 0.99239 0.94650 0.86749 0.80334 0.83531 0.78500 1.20309 1.21474 1.19004 1.21195 0.89718 0.94392 1.50454 0.91146 1.19568 0.96932 0.92502 0.96137 1.21418 0.91828 0.99773 1.00922 1.21668 0.97483 0.94534 1.01905 1.22051 0.85999 0.98504 1.00332 1.60453 1.08503 1.13056 1.49999 1.21802 0.92027 0.90793 1.00880 1.21092 0.95192 0.96599 0.93313 0.88572 1.21513 0.99143 0.97459 0.92640 1.21865 0.98402 0.97348 0.96297 1.20380 0.99105 0.99726 0.92507 1.20964 1.00525 0.94740 0.97788 1.21027 0.98145 0.96404 0.98313 1.20551 0.97954 0.99894 0.91893 1.21684 0.97862 0.95268 0.95766 0.92816 0.96785 0.97083 0.92852 0.93056 0.92743 0.91677 0.91183 0.95386 0.84358 0.90727 0.94592 0.89143 0.89191 0.86707 0.85925 0.85794 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.96 55.43 0.77 -27.71 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.12 -1.90 5.48 -26.73 -0.15 -2.05 16 12 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 13 N -0.69 -8.12 6.50 -113.78 -0.74 -8.86 16 14 C 0.07 0.75 5.40 -3.83 -0.02 0.73 16 15 C -0.04 -0.40 4.03 -92.51 -0.37 -0.77 16 16 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.07 -0.55 7.78 -28.62 -0.22 -0.77 16 18 C -0.14 -1.39 7.42 -104.96 -0.78 -2.17 16 19 C -0.10 -0.92 10.06 -39.43 -0.40 -1.32 16 20 C -0.12 -1.09 10.04 -39.65 -0.40 -1.49 16 21 C -0.12 -1.16 10.04 -39.64 -0.40 -1.56 16 22 C -0.08 -0.93 10.06 -39.43 -0.40 -1.33 16 23 C -0.11 -1.15 6.86 -104.96 -0.72 -1.87 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.34 3.62 8.73 -39.29 -0.34 3.28 16 34 H 0.07 0.83 8.04 -51.93 -0.42 0.42 16 35 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 36 H 0.09 0.62 7.98 -51.93 -0.41 0.21 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -31.90 337.18 -11.13 -43.03 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.02 Total: -0.92 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -4.55 Total: -28.14 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.03 Total: -36.58 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.90 -11.13 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385812712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.262 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds