Wall clock time and date at job start Mon Mar 30 2020 07:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00311 * 2 1 4 4 H 1.48492 * 109.47495 * 270.00075 * 3 2 1 5 5 H 1.48506 * 109.47176 * 30.00471 * 3 2 1 6 6 H 1.48505 * 109.46979 * 150.00048 * 3 2 1 7 7 C 1.37880 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99823 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47081 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46739 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46429 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99794 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47491 * 180.02562 * 14 13 12 16 16 H 1.09007 * 112.88542 * 46.66278 * 15 14 13 17 17 C 1.52257 * 113.59329 * 177.83715 * 15 14 13 18 18 C 1.50560 * 87.22876 * 114.58820 * 17 15 14 19 19 C 1.38814 * 147.30115 * 179.97438 * 18 17 15 20 20 C 1.38061 * 120.09140 * 180.02562 * 19 18 17 21 21 C 1.38241 * 119.98340 * 359.70470 * 20 19 18 22 22 C 1.38067 * 119.97557 * 0.59769 * 21 20 19 23 23 C 1.37716 * 92.77357 * 359.97438 * 18 17 15 24 24 H 0.97002 * 119.99704 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47018 * 60.00007 * 9 7 2 26 26 H 1.08996 * 109.47575 * 300.00052 * 9 7 2 27 27 H 1.09002 * 109.46942 * 60.00250 * 10 9 7 28 28 H 1.08998 * 109.47650 * 299.99974 * 10 9 7 29 29 H 1.08994 * 109.46724 * 60.00378 * 11 10 9 30 30 H 1.08998 * 109.46845 * 300.00452 * 11 10 9 31 31 H 1.08992 * 109.46824 * 60.00563 * 12 11 10 32 32 H 1.08995 * 109.47199 * 299.99832 * 12 11 10 33 33 H 1.00903 * 110.99937 * 56.05093 * 13 12 11 34 34 H 1.08996 * 109.47353 * 59.99772 * 14 13 12 35 35 H 1.09009 * 109.47219 * 300.00403 * 14 13 12 36 36 H 1.09000 * 113.58948 * 359.97438 * 17 15 14 37 37 H 1.09001 * 113.66259 * 229.18225 * 17 15 14 38 38 H 1.08003 * 119.95522 * 0.03636 * 19 18 17 39 39 H 1.08003 * 120.01018 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.01102 * 180.28280 * 21 20 19 41 41 H 1.08002 * 119.95461 * 179.69292 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 6 6.0613 -4.0794 -0.0015 13 7 7.5303 -4.0794 -0.0020 14 6 8.0567 -5.4508 -0.0032 15 6 9.5861 -5.4102 -0.0031 16 1 9.9915 -4.7105 0.7279 17 6 10.2323 -6.7878 0.0485 18 6 10.7694 -6.5070 -1.3298 19 6 11.5180 -6.9615 -2.4068 20 6 11.6771 -6.1662 -3.5240 21 6 11.0852 -4.9179 -3.5734 22 6 10.3456 -4.4622 -2.5003 23 6 10.1844 -5.2611 -1.3767 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6576 -3.1507 -0.8908 28 1 3.6584 -3.1504 0.8892 29 1 5.9147 -2.1230 0.8890 30 1 5.9148 -2.1230 -0.8909 31 1 5.6980 -4.5927 -0.8916 32 1 5.6979 -4.5935 0.8883 33 1 7.8922 -3.5535 0.7794 34 1 7.7068 -5.9736 -0.8933 35 1 7.7074 -5.9748 0.8866 36 1 9.5130 -7.6062 0.0784 37 1 11.0081 -6.8790 0.8087 38 1 11.9766 -7.9387 -2.3707 39 1 12.2595 -6.5213 -4.3614 40 1 11.2056 -4.2973 -4.4490 41 1 9.8875 -3.4849 -2.5372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385812712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:49 Heat of formation + Delta-G solvation = 21.225609 kcal Electronic energy + Delta-G solvation = -17879.596687 eV Core-core repulsion = 15144.725522 eV Total energy + Delta-G solvation = -2734.871165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58827 -38.07752 -36.74623 -35.53251 -34.01390 -31.66448 -30.85624 -28.67823 -27.06488 -25.31477 -23.88577 -22.70130 -22.21466 -21.69561 -20.59617 -18.85917 -17.74238 -16.88472 -16.48945 -16.37228 -16.07809 -15.75400 -15.45379 -15.17605 -14.73742 -14.27176 -14.11713 -13.87248 -13.73695 -13.48113 -13.10798 -12.98505 -12.87509 -12.61907 -12.36274 -12.22002 -12.06894 -11.75950 -11.64059 -11.41252 -11.30684 -11.27879 -11.06979 -10.76549 -9.69410 -9.54412 -9.29238 -8.29923 -6.34050 0.45074 0.49763 1.36080 1.37706 1.50385 2.36509 2.86629 3.05401 3.07446 3.33419 3.58368 3.82885 4.00856 4.16472 4.19941 4.23714 4.29189 4.39072 4.51531 4.57878 4.62761 4.71486 4.76795 4.78201 4.83082 4.89594 4.93148 5.04593 5.13892 5.20424 5.24191 5.26276 5.29437 5.53025 5.57774 5.63622 5.65223 5.68591 5.89031 6.06911 6.14861 6.29156 6.50312 6.74286 7.30757 8.87113 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035484 B = 0.002806 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.892336 B = 9974.584682 C =10382.116202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.012 4.012 10 C -0.095 4.095 11 C -0.106 4.106 12 C 0.069 3.931 13 N -0.695 5.695 14 C 0.079 3.921 15 C -0.040 4.040 16 H 0.104 0.896 17 C -0.060 4.060 18 C -0.152 4.152 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.108 4.108 23 C -0.132 4.132 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.347 0.653 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.765 -13.787 -1.622 31.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.060 4.060 13 N -0.327 5.327 14 C -0.050 4.050 15 C -0.058 4.058 16 H 0.122 0.878 17 C -0.097 4.097 18 C -0.152 4.152 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.126 4.126 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 27.671 -13.622 -2.317 30.929 hybrid contribution -0.704 0.597 0.582 1.091 sum 26.967 -13.025 -1.736 29.998 Atomic orbital electron populations 1.70081 1.08361 1.28183 1.52812 1.26094 0.95690 1.03765 0.94107 0.85588 0.79488 0.77925 0.79225 1.19202 1.20871 1.16865 1.21575 0.92447 0.93034 1.50271 0.95238 1.19543 0.93593 0.95463 0.96389 1.21295 0.94779 0.96859 1.00420 1.21486 0.94234 0.96454 1.02204 1.21832 0.87268 0.96571 1.00309 1.60373 1.07211 1.14411 1.50665 1.21767 0.92719 0.89711 1.00814 1.21104 0.94322 0.97766 0.92658 0.87762 1.21538 0.99490 0.96823 0.91866 1.22256 0.98332 0.97183 0.97434 1.20725 0.98936 1.00662 0.92410 1.21306 1.00260 0.94357 0.98502 1.21292 0.97962 0.97118 0.98525 1.20710 0.99008 1.00016 0.92893 1.22021 0.98754 0.95933 0.96531 0.92502 0.96174 0.96557 0.93691 0.93386 0.91734 0.92016 0.91933 0.94790 0.83435 0.92109 0.93168 0.88122 0.87318 0.84769 0.83600 0.84327 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.45 16 3 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.54 -31.92 9.66 25.60 0.25 -31.68 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.76 5.15 30.60 0.16 -3.60 16 11 C -0.11 -3.23 5.48 30.60 0.17 -3.07 16 12 C 0.07 1.77 5.69 86.30 0.49 2.26 16 13 N -0.69 -15.19 6.50 -513.90 -3.34 -18.53 16 14 C 0.08 1.46 5.40 86.30 0.47 1.92 16 15 C -0.04 -0.66 4.03 -12.02 -0.05 -0.71 16 16 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 17 C -0.06 -0.80 7.78 29.37 0.23 -0.57 16 18 C -0.15 -2.80 7.42 -20.09 -0.15 -2.95 16 19 C -0.11 -1.85 10.06 22.37 0.22 -1.63 16 20 C -0.13 -2.07 10.04 22.23 0.22 -1.85 16 21 C -0.13 -2.43 10.04 22.23 0.22 -2.20 16 22 C -0.11 -2.36 10.06 22.37 0.22 -2.14 16 23 C -0.13 -2.76 6.86 -20.08 -0.14 -2.90 16 24 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 26 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.35 6.65 8.73 -89.69 -0.78 5.87 16 34 H 0.06 1.30 8.04 -2.39 -0.02 1.28 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.10 1.13 7.98 -2.39 -0.02 1.11 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.11 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -69.45 337.18 1.89 -67.56 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.15 Total: 13.89 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 2.90 Total: -49.13 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -3.04 Total: -79.48 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -69.45 1.89 -67.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385812712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.783 kcal (2) G-P(sol) polarization free energy of solvation -69.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds