Wall clock time and date at job start Mon Mar 30 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48499 * 109.47136 * 240.00182 * 3 2 1 5 5 H 1.48502 * 109.46939 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47140 * 119.99825 * 3 2 1 7 7 C 1.37877 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00138 * 173.59131 * 7 2 1 9 9 C 1.50693 * 120.00266 * 353.59989 * 7 2 1 10 10 C 1.52996 * 115.55490 * 85.43823 * 9 7 2 11 11 N 1.46905 * 109.46962 * 65.05042 * 10 9 7 12 12 C 1.46900 * 111.00082 * 185.35179 * 11 10 9 13 13 C 1.53001 * 109.47048 * 180.02562 * 12 11 10 14 14 H 1.08991 * 110.01698 * 53.61076 * 13 12 11 15 15 C 1.54263 * 110.03123 * 175.00419 * 13 12 11 16 16 C 1.54889 * 104.19731 * 142.94156 * 15 13 12 17 17 C 1.54887 * 102.74982 * 322.05618 * 16 15 13 18 18 C 1.54088 * 109.96760 * 292.15748 * 13 12 11 19 19 F 1.39896 * 110.00699 * 121.35810 * 18 13 12 20 20 F 1.39901 * 110.16151 * 359.85669 * 18 13 12 21 21 C 1.53005 * 117.50058 * 231.11484 * 9 7 2 22 22 C 1.53001 * 117.49656 * 299.77395 * 9 7 2 23 23 H 0.96994 * 120.00406 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47405 * 305.05612 * 10 9 7 25 25 H 1.09002 * 109.47770 * 185.05229 * 10 9 7 26 26 H 1.00896 * 110.99616 * 61.39945 * 11 10 9 27 27 H 1.09004 * 109.47054 * 60.00305 * 12 11 10 28 28 H 1.09004 * 109.47167 * 300.00350 * 12 11 10 29 29 H 1.09000 * 110.49235 * 24.26165 * 15 13 12 30 30 H 1.09003 * 110.48271 * 261.61798 * 15 13 12 31 31 H 1.09003 * 110.75740 * 203.73473 * 16 15 13 32 32 H 1.09001 * 110.75515 * 80.37077 * 16 15 13 33 33 H 1.08994 * 110.48655 * 156.61866 * 17 16 15 34 34 H 1.09002 * 110.48167 * 279.13246 * 17 16 15 35 35 H 1.09004 * 117.49767 * 214.99846 * 21 9 7 36 36 H 1.08994 * 117.49356 * 0.02562 * 21 9 7 37 37 H 1.09007 * 117.49821 * 359.97421 * 22 9 7 38 38 H 1.09002 * 117.50479 * 144.97039 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1969 -0.1049 9 6 1.2582 -2.4951 0.1444 10 6 0.7038 -3.0860 -1.1534 11 7 1.8169 -3.4571 -2.0373 12 6 1.3228 -3.9107 -3.3442 13 6 2.5083 -4.2881 -4.2347 14 1 3.1459 -5.0081 -3.7218 15 6 2.0018 -4.8839 -5.5645 16 6 2.9971 -4.3491 -6.6239 17 6 3.2756 -2.9065 -6.1338 18 6 3.3171 -3.0274 -4.5964 19 9 4.6397 -3.1663 -4.1622 20 9 2.7361 -1.8974 -4.0110 21 6 1.7459 -3.4739 1.2145 22 6 0.4402 -2.7020 1.4207 23 1 -0.4850 0.8400 0.0004 24 1 0.0762 -2.3462 -1.6506 25 1 0.1103 -3.9714 -0.9252 26 1 2.4009 -4.1591 -1.6080 27 1 0.7543 -3.1091 -3.8159 28 1 0.6799 -4.7804 -3.2077 29 1 0.9919 -4.5343 -5.7791 30 1 2.0302 -5.9730 -5.5298 31 1 2.5399 -4.3395 -7.6134 32 1 3.9131 -4.9399 -6.6263 33 1 4.2336 -2.5525 -6.5145 34 1 2.4726 -2.2371 -6.4423 35 1 1.6717 -4.5388 0.9938 36 1 2.6062 -3.1765 1.8139 37 1 0.4423 -1.8970 2.1558 38 1 -0.4931 -3.2586 1.3358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390866222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:22 Heat of formation + Delta-G solvation = -85.828756 kcal Electronic energy + Delta-G solvation = -20455.386317 eV Core-core repulsion = 17161.643396 eV Total energy + Delta-G solvation = -3293.742920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.31269 -46.34637 -37.84466 -36.73337 -34.12444 -31.72533 -29.82604 -27.68352 -25.70478 -24.66614 -22.58306 -21.18941 -20.93070 -19.95289 -18.84853 -17.27786 -16.67448 -15.86713 -15.66803 -14.85700 -14.39574 -14.21626 -14.08030 -13.87857 -13.62309 -13.23730 -12.90752 -12.70051 -12.63568 -12.10895 -11.64790 -11.58459 -11.32951 -11.18212 -11.16357 -10.95799 -10.81043 -10.71485 -10.57574 -10.36848 -10.18936 -10.07631 -9.34499 -8.70360 -8.26023 -7.96898 -7.44431 -5.84820 -3.84943 3.45219 3.47482 3.53110 4.02144 4.11004 4.33013 4.50597 4.58550 4.88630 5.03164 5.17710 5.23481 5.38971 5.41796 5.45665 5.56718 5.60925 5.64661 5.79806 5.82807 5.93062 5.99511 6.08534 6.24407 6.35835 6.41322 6.56822 6.71036 6.80859 6.96552 7.19128 7.54869 7.66917 8.02037 8.08992 8.23064 8.66952 9.13451 9.77710 11.25413 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.006798 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.850262 B = 4118.111675 C = 4826.438538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.465 4.465 8 H 0.058 0.942 9 C 0.054 3.946 10 C 0.111 3.889 11 N -0.664 5.664 12 C 0.069 3.931 13 C -0.130 4.130 14 H 0.094 0.906 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.167 4.167 18 C 0.294 3.706 19 F -0.204 7.204 20 F -0.170 7.170 21 C -0.216 4.216 22 C -0.159 4.159 23 H 0.256 0.744 24 H 0.076 0.924 25 H -0.008 1.008 26 H 0.327 0.673 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 -9.867 -12.267 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.017 4.017 11 N -0.293 5.293 12 C -0.061 4.061 13 C -0.149 4.149 14 H 0.112 0.888 15 C -0.155 4.155 16 C -0.159 4.159 17 C -0.205 4.205 18 C 0.257 3.743 19 F -0.185 7.185 20 F -0.150 7.150 21 C -0.254 4.254 22 C -0.197 4.197 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.010 0.990 26 H 0.144 0.856 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.102 -9.043 -12.445 15.693 hybrid contribution 0.133 0.164 0.423 0.473 sum 3.235 -8.879 -12.022 15.292 Atomic orbital electron populations 1.69994 1.05780 1.26110 1.50781 1.24899 0.94720 0.98628 0.95073 0.86753 0.79696 0.83511 0.78597 1.20150 1.21604 1.20535 1.20254 0.92803 0.88352 1.48860 0.92370 1.18812 0.96990 0.93708 0.85159 1.21511 0.90461 0.95675 0.94097 1.60242 1.21992 1.44564 1.02527 1.21895 0.94077 0.98428 0.91717 1.22887 0.98594 0.95829 0.97629 0.88790 1.22380 0.99597 1.00655 0.92911 1.22446 0.99791 0.94660 0.98974 1.23411 1.04752 0.99505 0.92855 1.21508 0.76332 0.85512 0.90912 1.92977 1.37852 1.96112 1.91514 1.93149 1.83476 1.52505 1.85911 1.22990 0.98522 0.95365 1.08509 1.22514 0.91872 1.01153 1.04144 0.93403 0.90546 0.98997 0.85601 0.90420 0.95708 0.90474 0.90617 0.90373 0.90772 0.89436 0.88633 0.92301 0.90561 0.90092 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 12.92 55.43 0.72 -25.29 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.46 -13.19 8.74 -34.44 -0.30 -13.49 16 8 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 9 C 0.05 1.36 1.55 -155.66 -0.24 1.12 16 10 C 0.11 2.54 5.51 -3.82 -0.02 2.52 16 11 N -0.66 -13.35 5.47 -113.77 -0.62 -13.98 16 12 C 0.07 1.11 4.39 -3.82 -0.02 1.09 16 13 C -0.13 -1.75 2.94 -89.39 -0.26 -2.01 16 14 H 0.09 1.24 8.02 -51.93 -0.42 0.82 16 15 C -0.12 -1.15 6.36 -25.07 -0.16 -1.31 16 16 C -0.12 -1.08 6.91 -24.74 -0.17 -1.25 16 17 C -0.17 -1.92 6.39 -25.07 -0.16 -2.08 16 18 C 0.29 4.59 2.45 -25.50 -0.06 4.52 16 19 F -0.20 -3.52 17.04 2.25 0.04 -3.48 16 20 F -0.17 -3.45 14.79 2.25 0.03 -3.42 16 21 C -0.22 -4.85 9.96 -26.69 -0.27 -5.12 16 22 C -0.16 -3.84 9.41 -26.69 -0.25 -4.09 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.08 1.96 8.13 -51.92 -0.42 1.54 16 25 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 26 H 0.33 6.22 8.79 -39.29 -0.35 5.87 16 27 H 0.08 1.35 7.63 -51.93 -0.40 0.95 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -30.68 317.09 -8.27 -38.94 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.18 Total: 3.31 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.01 Total: -18.23 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.09 Total: -39.26 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.07 Total: -6.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.68 -8.27 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390866222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.884 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds