Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48499 * 109.47136 * 240.00182 * 3 2 1 5 5 H 1.48502 * 109.46939 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47140 * 119.99825 * 3 2 1 7 7 C 1.37877 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00138 * 173.59131 * 7 2 1 9 9 C 1.50693 * 120.00266 * 353.59989 * 7 2 1 10 10 C 1.52996 * 115.55490 * 85.43823 * 9 7 2 11 11 N 1.46905 * 109.46962 * 65.05042 * 10 9 7 12 12 C 1.46900 * 111.00082 * 185.35179 * 11 10 9 13 13 C 1.53001 * 109.47048 * 180.02562 * 12 11 10 14 14 H 1.08991 * 110.01698 * 53.61076 * 13 12 11 15 15 C 1.54263 * 110.03123 * 175.00419 * 13 12 11 16 16 C 1.54889 * 104.19731 * 142.94156 * 15 13 12 17 17 C 1.54887 * 102.74982 * 322.05618 * 16 15 13 18 18 C 1.54088 * 109.96760 * 292.15748 * 13 12 11 19 19 F 1.39896 * 110.00699 * 121.35810 * 18 13 12 20 20 F 1.39901 * 110.16151 * 359.85669 * 18 13 12 21 21 C 1.53005 * 117.50058 * 231.11484 * 9 7 2 22 22 C 1.53001 * 117.49656 * 299.77395 * 9 7 2 23 23 H 0.96994 * 120.00406 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47405 * 305.05612 * 10 9 7 25 25 H 1.09002 * 109.47770 * 185.05229 * 10 9 7 26 26 H 1.00896 * 110.99616 * 61.39945 * 11 10 9 27 27 H 1.09004 * 109.47054 * 60.00305 * 12 11 10 28 28 H 1.09004 * 109.47167 * 300.00350 * 12 11 10 29 29 H 1.09000 * 110.49235 * 24.26165 * 15 13 12 30 30 H 1.09003 * 110.48271 * 261.61798 * 15 13 12 31 31 H 1.09003 * 110.75740 * 203.73473 * 16 15 13 32 32 H 1.09001 * 110.75515 * 80.37077 * 16 15 13 33 33 H 1.08994 * 110.48655 * 156.61866 * 17 16 15 34 34 H 1.09002 * 110.48167 * 279.13246 * 17 16 15 35 35 H 1.09004 * 117.49767 * 214.99846 * 21 9 7 36 36 H 1.08994 * 117.49356 * 0.02562 * 21 9 7 37 37 H 1.09007 * 117.49821 * 359.97421 * 22 9 7 38 38 H 1.09002 * 117.50479 * 144.97039 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1969 -0.1049 9 6 1.2582 -2.4951 0.1444 10 6 0.7038 -3.0860 -1.1534 11 7 1.8169 -3.4571 -2.0373 12 6 1.3228 -3.9107 -3.3442 13 6 2.5083 -4.2881 -4.2347 14 1 3.1459 -5.0081 -3.7218 15 6 2.0018 -4.8839 -5.5645 16 6 2.9971 -4.3491 -6.6239 17 6 3.2756 -2.9065 -6.1338 18 6 3.3171 -3.0274 -4.5964 19 9 4.6397 -3.1663 -4.1622 20 9 2.7361 -1.8974 -4.0110 21 6 1.7459 -3.4739 1.2145 22 6 0.4402 -2.7020 1.4207 23 1 -0.4850 0.8400 0.0004 24 1 0.0762 -2.3462 -1.6506 25 1 0.1103 -3.9714 -0.9252 26 1 2.4009 -4.1591 -1.6080 27 1 0.7543 -3.1091 -3.8159 28 1 0.6799 -4.7804 -3.2077 29 1 0.9919 -4.5343 -5.7791 30 1 2.0302 -5.9730 -5.5298 31 1 2.5399 -4.3395 -7.6134 32 1 3.9131 -4.9399 -6.6263 33 1 4.2336 -2.5525 -6.5145 34 1 2.4726 -2.2371 -6.4423 35 1 1.6717 -4.5388 0.9938 36 1 2.6062 -3.1765 1.8139 37 1 0.4423 -1.8970 2.1558 38 1 -0.4931 -3.2586 1.3358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390866222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = -103.752131 kcal Electronic energy + Delta-G solvation = -20456.163532 eV Core-core repulsion = 17161.643396 eV Total energy + Delta-G solvation = -3294.520136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.63137 -47.72054 -39.12563 -38.30550 -35.59563 -33.89064 -31.02280 -28.65167 -27.67257 -26.34273 -24.05250 -22.82398 -22.00395 -21.21058 -20.74069 -18.48501 -18.22405 -17.55291 -16.89639 -16.62199 -16.14580 -15.62605 -15.43209 -15.11023 -14.98009 -14.78060 -14.55145 -14.09977 -13.93741 -13.58256 -13.18763 -13.13690 -12.87480 -12.71081 -12.54946 -12.41517 -12.30394 -12.12930 -12.07471 -11.95998 -11.56546 -11.33397 -11.26749 -10.73729 -10.36372 -9.91075 -9.00112 -8.03950 -6.08623 1.39374 1.41757 1.48239 2.47200 2.96342 3.09096 3.21077 3.26280 3.47128 3.53232 3.74961 4.06590 4.22004 4.33501 4.36862 4.41613 4.48737 4.56399 4.60746 4.69063 4.72024 4.76897 4.83518 4.91342 4.98647 5.07247 5.09138 5.14419 5.21205 5.28334 5.37325 5.64375 5.75953 5.88589 6.36004 6.52340 6.75501 6.93345 7.55821 9.05176 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.006798 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.850262 B = 4118.111675 C = 4826.438538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.477 4.477 8 H 0.040 0.960 9 C 0.023 3.977 10 C 0.128 3.872 11 N -0.681 5.681 12 C 0.071 3.929 13 C -0.124 4.124 14 H 0.099 0.901 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.163 4.163 18 C 0.269 3.731 19 F -0.218 7.218 20 F -0.206 7.206 21 C -0.188 4.188 22 C -0.164 4.164 23 H 0.256 0.744 24 H 0.038 0.962 25 H 0.010 0.990 26 H 0.334 0.666 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 -11.686 -13.610 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.001 4.001 11 N -0.311 5.311 12 C -0.058 4.058 13 C -0.143 4.143 14 H 0.117 0.883 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.201 4.201 18 C 0.233 3.767 19 F -0.200 7.200 20 F -0.187 7.187 21 C -0.225 4.225 22 C -0.202 4.202 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.152 0.848 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.444 -10.872 -13.790 17.895 hybrid contribution 0.070 0.717 0.852 1.116 sum 3.514 -10.156 -12.938 16.819 Atomic orbital electron populations 1.70083 1.06682 1.26568 1.51719 1.25509 0.95499 1.01336 0.95150 0.85929 0.78692 0.80500 0.78366 1.20744 1.20821 1.19789 1.20455 0.92200 0.90331 1.48536 0.94185 1.18931 0.98228 0.93855 0.86732 1.21116 0.90784 0.95128 0.93063 1.60106 1.21608 1.45815 1.03605 1.21910 0.95466 0.98439 0.90016 1.22900 0.97212 0.94937 0.99272 0.88300 1.22413 0.99873 1.01935 0.90566 1.22479 1.00197 0.92340 0.99779 1.23439 1.05305 1.01843 0.89496 1.22352 0.75710 0.85259 0.93336 1.92937 1.38960 1.96121 1.91938 1.93071 1.84090 1.54664 1.86855 1.22970 0.97136 0.96500 1.05918 1.22430 0.93427 1.01232 1.03086 0.93524 0.94323 0.97235 0.84827 0.92326 0.93492 0.90014 0.88118 0.87667 0.89757 0.88796 0.88449 0.89077 0.90869 0.92529 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.45 12.92 21.45 0.28 -54.18 16 2 C 0.02 1.39 5.39 84.66 0.46 1.84 16 3 Si 0.94 46.81 29.54 68.60 2.03 48.84 16 4 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.48 -27.64 8.74 25.60 0.22 -27.42 16 8 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 9 C 0.02 1.17 1.55 -52.93 -0.08 1.09 16 10 C 0.13 5.87 5.51 86.30 0.48 6.35 16 11 N -0.68 -27.26 5.47 -513.86 -2.81 -30.07 16 12 C 0.07 2.23 4.39 86.30 0.38 2.61 16 13 C -0.12 -3.12 2.94 -10.00 -0.03 -3.15 16 14 H 0.10 2.39 8.02 -2.39 -0.02 2.37 16 15 C -0.11 -1.77 6.36 31.67 0.20 -1.57 16 16 C -0.11 -1.56 6.91 31.88 0.22 -1.34 16 17 C -0.16 -3.46 6.39 31.67 0.20 -3.26 16 18 C 0.27 8.29 2.45 31.39 0.08 8.37 16 19 F -0.22 -7.54 17.04 44.97 0.77 -6.77 16 20 F -0.21 -8.62 14.79 44.97 0.67 -7.96 16 21 C -0.19 -8.16 9.96 30.62 0.30 -7.86 16 22 C -0.16 -7.87 9.41 30.62 0.29 -7.59 16 23 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.04 2.04 8.13 -2.38 -0.02 2.02 16 25 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 26 H 0.33 12.37 8.79 -89.70 -0.79 11.58 16 27 H 0.06 2.06 7.63 -2.39 -0.02 2.04 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.27 7.86 -2.39 -0.02 1.26 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.85 8.11 -2.39 -0.02 1.83 16 34 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 38 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -67.89 317.09 3.89 -64.00 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.25 Total: 18.05 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 2.72 Total: -31.92 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.54 Total: -84.24 kcal Atomic # 9 Polarization: -16.16 SS G_CDS: 1.43 Total: -14.73 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -67.89 3.89 -64.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390866222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.750 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds