Wall clock time and date at job start Mon Mar 30 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.36931 * 120.75837 * 2 1 4 4 C 1.39310 * 119.38800 * 180.02562 * 3 2 1 5 5 N 1.38604 * 119.52741 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99436 * 192.80045 * 5 4 3 7 7 C 1.46491 * 120.00029 * 12.79460 * 5 4 3 8 8 H 1.09001 * 109.47114 * 6.05936 * 7 5 4 9 9 C 1.53003 * 109.46884 * 126.05339 * 7 5 4 10 10 C 1.50702 * 109.47449 * 246.05721 * 7 5 4 11 11 H 1.07995 * 119.99409 * 0.02562 * 10 7 5 12 12 C 1.37871 * 119.99948 * 179.72866 * 10 7 5 13 13 N 1.31520 * 120.00162 * 0.27474 * 12 10 7 14 14 Si 1.86798 * 119.99928 * 180.27539 * 12 10 7 15 15 H 1.48496 * 109.47384 * 59.99863 * 14 12 10 16 16 H 1.48499 * 109.47436 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47217 * 299.99792 * 14 12 10 18 18 N 1.32589 * 120.94123 * 0.26837 * 4 3 2 19 19 C 1.31690 * 121.63974 * 359.44356 * 18 4 3 20 20 C 1.50700 * 119.74489 * 180.30372 * 19 18 4 21 21 C 1.39615 * 120.50679 * 0.55422 * 19 18 4 22 22 C 1.43201 * 120.48316 * 179.70499 * 21 19 18 23 23 N 3.49557 * 81.47664 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47253 * 90.00165 * 1 2 3 25 25 H 1.09001 * 109.47439 * 210.00483 * 1 2 3 26 26 H 1.09002 * 109.47723 * 329.99758 * 1 2 3 27 27 H 1.08002 * 120.29844 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.46809 * 269.99433 * 6 5 4 29 29 H 1.08993 * 109.47680 * 30.00067 * 6 5 4 30 30 H 1.09001 * 109.46855 * 150.00174 * 6 5 4 31 31 H 1.09001 * 109.46757 * 60.00378 * 9 7 5 32 32 H 1.09000 * 109.47543 * 179.97438 * 9 7 5 33 33 H 1.08992 * 109.47523 * 300.00338 * 9 7 5 34 34 H 0.97007 * 119.99874 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47147 * 270.24706 * 20 19 18 36 36 H 1.08998 * 109.47045 * 30.25034 * 20 19 18 37 37 H 1.09002 * 109.46610 * 150.24651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2072 1.1767 0.0000 4 6 3.5999 1.1434 -0.0005 5 7 4.3116 2.3327 0.0000 6 6 5.7493 2.3260 -0.2817 7 6 3.6263 3.5963 0.2821 8 1 2.5950 3.3937 0.5709 9 6 4.3425 4.3212 1.4234 10 6 3.6416 4.4624 -0.9512 11 1 4.1143 4.1068 -1.8547 12 6 3.0470 5.7060 -0.9276 13 7 2.4710 6.1388 0.1728 14 14 3.0593 6.7764 -2.4585 15 1 2.3652 6.0677 -3.5635 16 1 2.3594 8.0549 -2.1743 17 1 4.4626 7.0572 -2.8548 18 7 4.2542 -0.0098 -0.0064 19 6 3.6201 -1.1639 -0.0010 20 6 4.4067 -2.4493 -0.0011 21 6 2.2245 -1.2058 -0.0005 22 6 1.5355 -2.4612 -0.0010 23 7 0.9888 -3.4570 -0.0015 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6845 2.1218 -0.0004 28 1 6.3015 2.2068 0.6505 29 1 5.9845 1.4991 -0.9516 30 1 6.0315 3.2673 -0.7533 31 1 5.3738 4.5238 1.1345 32 1 3.8329 5.2616 1.6330 33 1 4.3314 3.6949 2.3153 34 1 2.0529 7.0140 0.1894 35 1 4.5960 -2.7594 -1.0287 36 1 5.3557 -2.2945 0.5124 37 1 3.8374 -3.2237 0.5132 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396414985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:36 Heat of formation + Delta-G solvation = 62.079302 kcal Electronic energy + Delta-G solvation = -19031.175228 eV Core-core repulsion = 16194.535268 eV Total energy + Delta-G solvation = -2836.639959 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23665 -37.17090 -35.91741 -33.99556 -33.23915 -31.42727 -29.23455 -28.05755 -27.67288 -25.58180 -25.32333 -22.82581 -20.64786 -20.04720 -18.19898 -16.81151 -16.39693 -16.33941 -14.87761 -14.74394 -13.92592 -13.70003 -13.54967 -13.44224 -13.22090 -12.84225 -12.70855 -12.68413 -12.46160 -12.21229 -11.98720 -11.91136 -11.72275 -11.52578 -11.36226 -11.08750 -10.96810 -10.75000 -10.36506 -10.27490 -9.63579 -9.19061 -9.09423 -8.89064 -8.59982 -6.90729 -6.23230 -4.34017 1.23029 1.68859 2.96902 3.19211 3.24886 3.26714 3.37657 3.63157 4.24466 4.28869 4.35592 4.63422 4.84431 5.06473 5.23014 5.48973 5.58816 5.64500 5.71767 5.73488 5.86484 5.95287 6.06567 6.14121 6.18222 6.34176 6.40566 6.50154 6.63210 6.70309 6.78093 6.93252 7.20643 7.42486 7.58784 7.79624 7.86707 7.98605 8.23321 8.52238 8.74832 9.34132 10.79584 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.005613 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.750725 B = 4987.194848 C = 5519.615936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.042 3.958 3 C -0.239 4.239 4 C 0.443 3.557 5 N -0.568 5.568 6 C 0.103 3.897 7 C 0.263 3.737 8 H 0.055 0.945 9 C -0.149 4.149 10 C -0.531 4.531 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.888 5.888 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.558 5.558 19 C 0.236 3.764 20 C -0.107 4.107 21 C -0.191 4.191 22 C 0.286 3.714 23 N -0.461 5.461 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.096 0.904 33 H 0.014 0.986 34 H 0.266 0.734 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -7.945 0.486 8.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.033 3.967 3 C -0.264 4.264 4 C 0.204 3.796 5 N -0.271 5.271 6 C -0.041 4.041 7 C 0.163 3.837 8 H 0.073 0.927 9 C -0.207 4.207 10 C -0.570 4.570 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 N -0.278 5.278 19 C 0.091 3.909 20 C -0.165 4.165 21 C -0.202 4.202 22 C -0.027 4.027 23 N -0.138 5.138 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.168 0.832 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.792 -8.966 0.562 9.160 hybrid contribution -0.633 1.178 -0.811 1.564 sum 1.159 -7.788 -0.249 7.878 Atomic orbital electron populations 1.20881 0.90507 1.03225 1.03094 1.19628 0.95894 0.90824 0.90334 1.21195 0.93246 0.99307 1.12649 1.18652 0.88426 0.86221 0.86344 1.47368 1.08286 1.04192 1.67274 1.21440 0.80650 1.02242 0.99743 1.19148 0.92331 0.77622 0.94607 0.92695 1.22117 1.00066 1.02517 0.96026 1.21310 1.37582 1.00903 0.97162 0.92006 1.24876 0.94686 0.97481 0.96452 1.69846 1.36369 1.19871 1.26484 0.86526 0.78381 0.79485 0.82900 1.20131 1.21117 1.20140 1.67196 1.39469 0.96622 1.24527 1.20856 0.88673 0.93260 0.88103 1.20774 1.00355 0.92088 1.03272 1.16286 0.92774 0.86933 1.24198 1.25413 0.92651 0.92394 0.92271 1.81184 1.09094 1.11308 1.12251 0.90215 0.91644 0.90202 0.83233 0.94087 0.92032 0.90789 0.94685 0.88515 0.96716 0.92400 0.90023 0.89900 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.67 36.00 0.35 -1.19 16 2 C 0.04 0.65 5.91 -104.32 -0.62 0.04 16 3 C -0.24 -4.24 8.83 -39.66 -0.35 -4.59 16 4 C 0.44 8.35 7.29 -155.18 -1.13 7.22 16 5 N -0.57 -11.27 2.86 -175.44 -0.50 -11.77 16 6 C 0.10 1.80 9.20 59.85 0.55 2.35 16 7 C 0.26 5.85 2.43 -69.08 -0.17 5.69 16 8 H 0.06 1.29 5.57 -51.93 -0.29 1.00 16 9 C -0.15 -3.22 8.88 37.16 0.33 -2.89 16 10 C -0.53 -12.96 8.09 -34.44 -0.28 -13.24 16 11 H 0.06 1.54 7.76 -52.49 -0.41 1.13 16 12 C 0.07 1.69 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -22.71 11.33 55.43 0.63 -22.08 16 14 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 N -0.56 -9.71 9.18 -8.36 -0.08 -9.78 16 19 C 0.24 3.61 6.82 -82.14 -0.56 3.05 16 20 C -0.11 -1.27 9.78 36.01 0.35 -0.92 16 21 C -0.19 -2.93 5.75 -106.67 -0.61 -3.55 16 22 C 0.29 4.34 12.42 -22.47 -0.28 4.06 16 23 N -0.46 -7.49 18.54 41.84 0.78 -6.71 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.81 7.19 -51.93 -0.37 0.43 16 26 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 27 H 0.15 2.79 6.02 -52.49 -0.32 2.48 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.01 7.59 -51.93 -0.39 0.62 16 30 H 0.07 1.32 7.44 -51.93 -0.39 0.94 16 31 H 0.03 0.72 7.50 -51.93 -0.39 0.33 16 32 H 0.10 2.30 6.08 -51.93 -0.32 1.98 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.79 7.08 -51.93 -0.37 0.42 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -25.92 312.49 -6.91 -32.83 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.91 Total: 0.57 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.51 Total: -2.38 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.83 Total: -50.35 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -25.92 -6.91 -32.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396414985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.907 kcal (2) G-P(sol) polarization free energy of solvation -25.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds