Wall clock time and date at job start Mon Mar 30 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.36931 * 120.75837 * 2 1 4 4 C 1.39310 * 119.38800 * 180.02562 * 3 2 1 5 5 N 1.38604 * 119.52741 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99436 * 192.80045 * 5 4 3 7 7 C 1.46491 * 120.00029 * 12.79460 * 5 4 3 8 8 H 1.09001 * 109.47114 * 6.05936 * 7 5 4 9 9 C 1.53003 * 109.46884 * 126.05339 * 7 5 4 10 10 C 1.50702 * 109.47449 * 246.05721 * 7 5 4 11 11 H 1.07995 * 119.99409 * 0.02562 * 10 7 5 12 12 C 1.37871 * 119.99948 * 179.72866 * 10 7 5 13 13 N 1.31520 * 120.00162 * 0.27474 * 12 10 7 14 14 Si 1.86798 * 119.99928 * 180.27539 * 12 10 7 15 15 H 1.48496 * 109.47384 * 59.99863 * 14 12 10 16 16 H 1.48499 * 109.47436 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47217 * 299.99792 * 14 12 10 18 18 N 1.32589 * 120.94123 * 0.26837 * 4 3 2 19 19 C 1.31690 * 121.63974 * 359.44356 * 18 4 3 20 20 C 1.50700 * 119.74489 * 180.30372 * 19 18 4 21 21 C 1.39615 * 120.50679 * 0.55422 * 19 18 4 22 22 C 1.43201 * 120.48316 * 179.70499 * 21 19 18 23 23 N 3.49557 * 81.47664 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47253 * 90.00165 * 1 2 3 25 25 H 1.09001 * 109.47439 * 210.00483 * 1 2 3 26 26 H 1.09002 * 109.47723 * 329.99758 * 1 2 3 27 27 H 1.08002 * 120.29844 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.46809 * 269.99433 * 6 5 4 29 29 H 1.08993 * 109.47680 * 30.00067 * 6 5 4 30 30 H 1.09001 * 109.46855 * 150.00174 * 6 5 4 31 31 H 1.09001 * 109.46757 * 60.00378 * 9 7 5 32 32 H 1.09000 * 109.47543 * 179.97438 * 9 7 5 33 33 H 1.08992 * 109.47523 * 300.00338 * 9 7 5 34 34 H 0.97007 * 119.99874 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47147 * 270.24706 * 20 19 18 36 36 H 1.08998 * 109.47045 * 30.25034 * 20 19 18 37 37 H 1.09002 * 109.46610 * 150.24651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2072 1.1767 0.0000 4 6 3.5999 1.1434 -0.0005 5 7 4.3116 2.3327 0.0000 6 6 5.7493 2.3260 -0.2817 7 6 3.6263 3.5963 0.2821 8 1 2.5950 3.3937 0.5709 9 6 4.3425 4.3212 1.4234 10 6 3.6416 4.4624 -0.9512 11 1 4.1143 4.1068 -1.8547 12 6 3.0470 5.7060 -0.9276 13 7 2.4710 6.1388 0.1728 14 14 3.0593 6.7764 -2.4585 15 1 2.3652 6.0677 -3.5635 16 1 2.3594 8.0549 -2.1743 17 1 4.4626 7.0572 -2.8548 18 7 4.2542 -0.0098 -0.0064 19 6 3.6201 -1.1639 -0.0010 20 6 4.4067 -2.4493 -0.0011 21 6 2.2245 -1.2058 -0.0005 22 6 1.5355 -2.4612 -0.0010 23 7 0.9888 -3.4570 -0.0015 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6845 2.1218 -0.0004 28 1 6.3015 2.2068 0.6505 29 1 5.9845 1.4991 -0.9516 30 1 6.0315 3.2673 -0.7533 31 1 5.3738 4.5238 1.1345 32 1 3.8329 5.2616 1.6330 33 1 4.3314 3.6949 2.3153 34 1 2.0529 7.0140 0.1894 35 1 4.5960 -2.7594 -1.0287 36 1 5.3557 -2.2945 0.5124 37 1 3.8374 -3.2237 0.5132 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396414985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:36 Heat of formation + Delta-G solvation = 50.551538 kcal Electronic energy + Delta-G solvation = -19031.675109 eV Core-core repulsion = 16194.535268 eV Total energy + Delta-G solvation = -2837.139841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55831 -38.62324 -37.27612 -35.26677 -34.90428 -32.85412 -30.85485 -29.32437 -28.77486 -27.26833 -26.87055 -24.29190 -21.88747 -21.60861 -19.54658 -18.40970 -17.95203 -17.82089 -16.56584 -16.09954 -15.29893 -15.16145 -14.99013 -14.69110 -14.35276 -14.16471 -14.00190 -13.87557 -13.80980 -13.49008 -13.35941 -13.12726 -13.08305 -12.91530 -12.80826 -12.71659 -12.64559 -12.39241 -12.15421 -11.99605 -11.28090 -10.54761 -10.53086 -10.37847 -10.32239 -8.41363 -8.06737 -6.27695 -0.07054 0.40414 1.45371 1.47276 1.53514 1.72461 2.09097 2.16992 2.46987 2.98148 3.07551 3.15706 3.43856 3.66634 3.96031 4.31802 4.45108 4.53088 4.61503 4.66181 4.70172 4.75864 4.77000 4.83270 4.92710 4.99924 5.02191 5.05641 5.12555 5.23210 5.28779 5.47116 5.61130 5.68216 5.81972 6.12991 6.23929 6.57075 6.71519 6.78977 7.19913 7.44285 8.89619 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.005613 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.750725 B = 4987.194848 C = 5519.615936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.258 4.258 4 C 0.428 3.572 5 N -0.582 5.582 6 C 0.108 3.892 7 C 0.270 3.730 8 H 0.038 0.962 9 C -0.137 4.137 10 C -0.538 4.538 11 H 0.053 0.947 12 C 0.028 3.972 13 N -0.910 5.910 14 Si 0.953 3.047 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.563 5.563 19 C 0.234 3.766 20 C -0.104 4.104 21 C -0.189 4.189 22 C 0.302 3.698 23 N -0.472 5.472 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -9.312 0.039 9.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.042 3.958 3 C -0.283 4.283 4 C 0.190 3.810 5 N -0.287 5.287 6 C -0.035 4.035 7 C 0.169 3.831 8 H 0.056 0.944 9 C -0.196 4.196 10 C -0.577 4.577 11 H 0.071 0.929 12 C -0.172 4.172 13 N -0.548 5.548 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.198 1.198 18 N -0.284 5.284 19 C 0.090 3.910 20 C -0.161 4.161 21 C -0.199 4.199 22 C -0.011 4.011 23 N -0.150 5.150 24 H 0.111 0.889 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.944 -10.371 0.113 10.552 hybrid contribution -0.717 1.470 -0.664 1.765 sum 1.226 -8.901 -0.551 9.002 Atomic orbital electron populations 1.20950 0.88538 1.03975 1.04123 1.19890 0.97305 0.90150 0.88467 1.21111 0.93133 0.99472 1.14599 1.18816 0.88808 0.86450 0.86941 1.47186 1.08964 1.03807 1.68750 1.21442 0.79651 1.02071 1.00333 1.18832 0.91856 0.78558 0.93889 0.94412 1.21941 0.99771 1.01503 0.96353 1.21509 1.37166 1.01352 0.97638 0.92892 1.25492 0.94589 0.98546 0.98598 1.69948 1.37028 1.20082 1.27780 0.85691 0.78312 0.78023 0.80079 1.20220 1.20951 1.19794 1.67247 1.39586 0.96663 1.24857 1.21449 0.89117 0.93832 0.86628 1.20863 1.00434 0.90213 1.04583 1.16358 0.92998 0.86879 1.23690 1.25163 0.92187 0.91953 0.91808 1.81219 1.09494 1.11674 1.12592 0.88910 0.90859 0.89479 0.84832 0.93098 0.91164 0.91696 0.94319 0.90749 0.95665 0.92499 0.88365 0.88812 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.67 71.23 0.69 -2.17 16 2 C 0.05 1.52 5.91 -19.67 -0.12 1.41 16 3 C -0.26 -9.18 8.83 22.22 0.20 -8.98 16 4 C 0.43 16.01 7.29 133.18 0.97 16.98 16 5 N -0.58 -23.15 2.86 -708.96 -2.03 -25.17 16 6 C 0.11 3.72 9.20 127.77 1.18 4.90 16 7 C 0.27 12.22 2.43 44.25 0.11 12.33 16 8 H 0.04 1.84 5.57 -2.39 -0.01 1.83 16 9 C -0.14 -5.99 8.88 71.98 0.64 -5.35 16 10 C -0.54 -26.58 8.09 25.60 0.21 -26.37 16 11 H 0.05 2.66 7.76 -2.91 -0.02 2.63 16 12 C 0.03 1.42 5.31 84.65 0.45 1.87 16 13 N -0.91 -47.15 11.33 21.45 0.24 -46.91 16 14 Si 0.95 40.31 29.54 68.60 2.03 42.34 16 15 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 N -0.56 -18.86 9.18 -180.36 -1.66 -20.52 16 19 C 0.23 6.70 6.82 42.91 0.29 6.99 16 20 C -0.10 -2.15 9.78 71.24 0.70 -1.45 16 21 C -0.19 -5.43 5.75 -21.19 -0.12 -5.55 16 22 C 0.30 8.43 12.42 88.33 1.10 9.53 16 23 N -0.47 -14.19 18.54 19.00 0.35 -13.84 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 1.65 7.19 -2.39 -0.02 1.63 16 26 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 27 H 0.13 5.16 6.02 -2.91 -0.02 5.14 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 2.25 7.59 -2.39 -0.02 2.24 16 30 H 0.06 2.31 7.44 -2.39 -0.02 2.30 16 31 H 0.04 1.61 7.50 -2.39 -0.02 1.59 16 32 H 0.07 3.60 6.08 -2.39 -0.01 3.59 16 33 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.52 7.08 -2.39 -0.02 1.50 16 Total: -1.00 -54.06 312.49 6.30 -47.76 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.08 Total: 12.22 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.28 Total: 4.12 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -3.09 Total: -106.44 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -54.06 6.30 -47.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396414985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.313 kcal (2) G-P(sol) polarization free energy of solvation -54.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds