Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36917 * 120.75466 * 2 1 4 4 C 1.39318 * 119.38778 * 179.75684 * 3 2 1 5 5 N 1.38591 * 119.53590 * 180.27208 * 4 3 2 6 6 C 1.46504 * 119.99615 * 5.25561 * 5 4 3 7 7 C 1.46501 * 120.00366 * 185.24974 * 5 4 3 8 8 H 1.09002 * 109.46961 * 0.02562 * 7 5 4 9 9 C 1.52997 * 109.47220 * 239.99964 * 7 5 4 10 10 C 1.50696 * 109.46847 * 120.00163 * 7 5 4 11 11 H 1.07999 * 120.00645 * 35.00872 * 10 7 5 12 12 C 1.37883 * 119.99774 * 215.00432 * 10 7 5 13 13 N 1.31522 * 119.99542 * 184.91764 * 12 10 7 14 14 Si 1.86793 * 120.00084 * 4.91859 * 12 10 7 15 15 H 1.48498 * 109.47451 * 84.83356 * 14 12 10 16 16 H 1.48500 * 109.46923 * 204.83537 * 14 12 10 17 17 H 1.48504 * 109.47278 * 324.83276 * 14 12 10 18 18 N 1.32595 * 120.93484 * 0.53207 * 4 3 2 19 19 C 1.31684 * 121.64226 * 359.74015 * 18 4 3 20 20 C 1.50702 * 119.74715 * 180.02562 * 19 18 4 21 21 C 1.39622 * 120.50912 * 359.97438 * 19 18 4 22 22 C 1.43195 * 120.48226 * 179.97438 * 21 19 18 23 23 N 3.49557 * 81.47491 * 180.27830 * 2 1 3 24 24 H 1.08997 * 109.47115 * 269.71929 * 1 2 3 25 25 H 1.09005 * 109.46900 * 149.72217 * 1 2 3 26 26 H 1.08994 * 109.47151 * 29.72099 * 1 2 3 27 27 H 1.07999 * 120.30670 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47144 * 89.99783 * 6 5 4 29 29 H 1.09000 * 109.46867 * 209.99755 * 6 5 4 30 30 H 1.08998 * 109.46949 * 329.99303 * 6 5 4 31 31 H 1.09006 * 109.46538 * 54.98011 * 9 7 5 32 32 H 1.09000 * 109.47044 * 174.97551 * 9 7 5 33 33 H 1.08994 * 109.47305 * 294.97965 * 9 7 5 34 34 H 0.97002 * 119.99578 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46628 * 269.98239 * 20 19 18 36 36 H 1.08999 * 109.46926 * 29.97443 * 20 19 18 37 37 H 1.08999 * 109.47270 * 149.98239 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1766 0.0000 4 6 3.5999 1.1434 0.0052 5 7 4.3117 2.3326 0.0109 6 6 3.6033 3.6096 0.1277 7 6 5.7724 2.3126 -0.0997 8 1 6.1168 1.2813 -0.1774 9 6 6.3868 2.9640 1.1408 10 6 6.1935 3.0762 -1.3288 11 1 5.6381 3.9490 -1.6390 12 6 7.2880 2.6608 -2.0572 13 7 7.7139 3.3804 -3.0723 14 14 8.1657 1.0759 -1.6023 15 1 7.4772 -0.0730 -2.2435 16 1 9.5724 1.1361 -2.0743 17 1 8.1455 0.9046 -0.1273 18 7 4.2543 -0.0098 -0.0005 19 6 3.6201 -1.1639 -0.0061 20 6 4.4067 -2.4493 -0.0118 21 6 2.2245 -1.2058 -0.0057 22 6 1.5355 -2.4611 -0.0123 23 7 0.9888 -3.4569 -0.0168 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8924 -0.5095 27 1 1.6846 2.1218 -0.0004 28 1 3.5045 3.8753 1.1802 29 1 4.1654 4.3857 -0.3917 30 1 2.6131 3.5179 -0.3184 31 1 6.0115 2.4672 2.0355 32 1 7.4719 2.8698 1.1010 33 1 6.1145 4.0190 1.1698 34 1 8.4837 3.0880 -3.5850 35 1 4.5964 -2.7546 -1.0410 36 1 5.3555 -2.2969 0.5026 37 1 3.8373 -3.2261 0.4985 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396414986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = 65.670372 kcal Electronic energy + Delta-G solvation = -19171.887721 eV Core-core repulsion = 16335.403482 eV Total energy + Delta-G solvation = -2836.484239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33765 -37.27127 -35.95637 -34.10822 -33.09178 -31.61305 -30.18637 -27.81852 -27.36040 -26.37658 -25.32719 -22.49236 -21.10178 -19.71793 -18.35255 -17.29747 -16.77467 -16.09177 -14.94962 -14.65902 -14.10724 -13.88445 -13.59686 -13.41329 -13.28858 -12.90448 -12.85900 -12.75916 -12.57590 -12.46233 -12.20807 -12.01442 -11.96202 -11.82681 -11.46113 -11.31152 -11.10787 -10.78653 -10.54010 -9.85712 -9.57791 -9.29066 -9.09494 -8.93230 -8.67157 -6.98198 -6.24293 -4.27241 1.17050 1.57057 2.91761 3.24340 3.31910 3.32973 3.37637 3.49866 4.20442 4.27564 4.31144 4.57492 4.72542 5.03188 5.17972 5.37464 5.40032 5.50161 5.56935 5.68471 5.71980 5.77800 5.86874 5.87662 6.05351 6.18158 6.23105 6.27476 6.38609 6.42323 6.52294 6.65872 6.95240 7.00550 7.46910 7.65410 7.78072 7.85652 8.38929 8.54496 8.77425 9.37179 10.87447 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.006809 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.764964 B = 4110.932977 C = 4854.855136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 C -0.263 4.263 4 C 0.447 3.553 5 N -0.561 5.561 6 C 0.089 3.911 7 C 0.225 3.775 8 H 0.074 0.926 9 C -0.147 4.147 10 C -0.528 4.528 11 H 0.077 0.923 12 C 0.080 3.920 13 N -0.890 5.890 14 Si 0.874 3.126 15 H -0.269 1.269 16 H -0.289 1.289 17 H -0.261 1.261 18 N -0.546 5.546 19 C 0.246 3.754 20 C -0.113 4.113 21 C -0.194 4.194 22 C 0.285 3.715 23 N -0.459 5.459 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -3.690 7.390 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.040 3.960 3 C -0.289 4.289 4 C 0.207 3.793 5 N -0.263 5.263 6 C -0.055 4.055 7 C 0.125 3.875 8 H 0.092 0.908 9 C -0.206 4.206 10 C -0.566 4.566 11 H 0.095 0.905 12 C -0.124 4.124 13 N -0.526 5.526 14 Si 0.701 3.299 15 H -0.195 1.195 16 H -0.215 1.215 17 H -0.186 1.186 18 N -0.265 5.265 19 C 0.100 3.900 20 C -0.170 4.170 21 C -0.205 4.205 22 C -0.028 4.028 23 N -0.136 5.136 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.155 0.845 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.007 -4.855 7.230 12.528 hybrid contribution -0.076 -0.217 -0.008 0.230 sum -9.083 -5.072 7.221 12.664 Atomic orbital electron populations 1.20879 0.90510 1.03294 1.02956 1.19566 0.95713 0.90921 0.89761 1.20901 0.92997 0.98736 1.16253 1.18629 0.87851 0.86832 0.85959 1.47492 1.08191 1.01493 1.69167 1.21723 0.97022 0.86197 1.00510 1.19469 0.74603 0.99105 0.94371 0.90777 1.22234 1.00768 1.00390 0.97238 1.21131 1.13435 1.13199 1.08847 0.90470 1.24961 0.96546 0.96712 0.94170 1.69890 1.25375 1.38163 1.19204 0.86889 0.78708 0.84448 0.79845 1.19475 1.21493 1.18580 1.67201 1.39249 0.96570 1.23485 1.20956 0.88638 0.93363 0.87072 1.20837 1.00530 0.91955 1.03672 1.16266 0.92733 0.86979 1.24507 1.25377 0.92685 0.92422 0.92328 1.81193 1.09159 1.11086 1.12174 0.90247 0.91436 0.90469 0.84455 0.93471 0.89559 0.91972 0.95438 0.92541 0.93278 0.92307 0.89686 0.89672 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.67 36.01 0.35 -0.89 16 2 C 0.05 0.68 5.91 -104.32 -0.62 0.06 16 3 C -0.26 -3.89 8.89 -39.66 -0.35 -4.24 16 4 C 0.45 8.16 7.36 -155.19 -1.14 7.02 16 5 N -0.56 -10.75 2.86 -175.43 -0.50 -11.25 16 6 C 0.09 1.36 9.43 59.85 0.56 1.92 16 7 C 0.23 5.00 2.32 -69.09 -0.16 4.84 16 8 H 0.07 1.75 3.95 -51.93 -0.21 1.55 16 9 C -0.15 -2.92 9.10 37.16 0.34 -2.59 16 10 C -0.53 -13.72 8.72 -34.44 -0.30 -14.02 16 11 H 0.08 2.14 6.82 -52.49 -0.36 1.78 16 12 C 0.08 2.19 5.47 -17.81 -0.10 2.10 16 13 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 14 Si 0.87 20.90 26.99 -169.99 -4.59 16.31 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.26 -5.96 6.82 56.52 0.39 -5.57 16 18 N -0.55 -10.42 8.73 -8.36 -0.07 -10.49 16 19 C 0.25 4.01 6.82 -82.14 -0.56 3.45 16 20 C -0.11 -1.53 9.78 36.01 0.35 -1.18 16 21 C -0.19 -2.90 5.75 -106.68 -0.61 -3.52 16 22 C 0.29 4.24 12.42 -22.48 -0.28 3.96 16 23 N -0.46 -7.33 18.54 41.84 0.78 -6.55 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.72 7.18 -51.93 -0.37 0.35 16 26 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.14 1.69 5.98 -52.49 -0.31 1.37 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.44 6.56 -51.93 -0.34 1.10 16 30 H 0.06 0.80 5.94 -51.93 -0.31 0.49 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.87 7.08 -51.93 -0.37 0.51 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -29.78 310.36 -6.24 -36.02 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.78 Total: -0.56 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.52 Total: -3.09 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.97 Total: -53.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.59 Total: 16.31 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.78 -6.24 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396414986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.689 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds