Wall clock time and date at job start Mon Mar 30 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36917 * 120.75466 * 2 1 4 4 C 1.39318 * 119.38778 * 179.75684 * 3 2 1 5 5 N 1.38591 * 119.53590 * 180.27208 * 4 3 2 6 6 C 1.46504 * 119.99615 * 5.25561 * 5 4 3 7 7 C 1.46501 * 120.00366 * 185.24974 * 5 4 3 8 8 H 1.09002 * 109.46961 * 0.02562 * 7 5 4 9 9 C 1.52997 * 109.47220 * 239.99964 * 7 5 4 10 10 C 1.50696 * 109.46847 * 120.00163 * 7 5 4 11 11 H 1.07999 * 120.00645 * 35.00872 * 10 7 5 12 12 C 1.37883 * 119.99774 * 215.00432 * 10 7 5 13 13 N 1.31522 * 119.99542 * 184.91764 * 12 10 7 14 14 Si 1.86793 * 120.00084 * 4.91859 * 12 10 7 15 15 H 1.48498 * 109.47451 * 84.83356 * 14 12 10 16 16 H 1.48500 * 109.46923 * 204.83537 * 14 12 10 17 17 H 1.48504 * 109.47278 * 324.83276 * 14 12 10 18 18 N 1.32595 * 120.93484 * 0.53207 * 4 3 2 19 19 C 1.31684 * 121.64226 * 359.74015 * 18 4 3 20 20 C 1.50702 * 119.74715 * 180.02562 * 19 18 4 21 21 C 1.39622 * 120.50912 * 359.97438 * 19 18 4 22 22 C 1.43195 * 120.48226 * 179.97438 * 21 19 18 23 23 N 3.49557 * 81.47491 * 180.27830 * 2 1 3 24 24 H 1.08997 * 109.47115 * 269.71929 * 1 2 3 25 25 H 1.09005 * 109.46900 * 149.72217 * 1 2 3 26 26 H 1.08994 * 109.47151 * 29.72099 * 1 2 3 27 27 H 1.07999 * 120.30670 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47144 * 89.99783 * 6 5 4 29 29 H 1.09000 * 109.46867 * 209.99755 * 6 5 4 30 30 H 1.08998 * 109.46949 * 329.99303 * 6 5 4 31 31 H 1.09006 * 109.46538 * 54.98011 * 9 7 5 32 32 H 1.09000 * 109.47044 * 174.97551 * 9 7 5 33 33 H 1.08994 * 109.47305 * 294.97965 * 9 7 5 34 34 H 0.97002 * 119.99578 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46628 * 269.98239 * 20 19 18 36 36 H 1.08999 * 109.46926 * 29.97443 * 20 19 18 37 37 H 1.08999 * 109.47270 * 149.98239 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1766 0.0000 4 6 3.5999 1.1434 0.0052 5 7 4.3117 2.3326 0.0109 6 6 3.6033 3.6096 0.1277 7 6 5.7724 2.3126 -0.0997 8 1 6.1168 1.2813 -0.1774 9 6 6.3868 2.9640 1.1408 10 6 6.1935 3.0762 -1.3288 11 1 5.6381 3.9490 -1.6390 12 6 7.2880 2.6608 -2.0572 13 7 7.7139 3.3804 -3.0723 14 14 8.1657 1.0759 -1.6023 15 1 7.4772 -0.0730 -2.2435 16 1 9.5724 1.1361 -2.0743 17 1 8.1455 0.9046 -0.1273 18 7 4.2543 -0.0098 -0.0005 19 6 3.6201 -1.1639 -0.0061 20 6 4.4067 -2.4493 -0.0118 21 6 2.2245 -1.2058 -0.0057 22 6 1.5355 -2.4611 -0.0123 23 7 0.9888 -3.4569 -0.0168 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8924 -0.5095 27 1 1.6846 2.1218 -0.0004 28 1 3.5045 3.8753 1.1802 29 1 4.1654 4.3857 -0.3917 30 1 2.6131 3.5179 -0.3184 31 1 6.0115 2.4672 2.0355 32 1 7.4719 2.8698 1.1010 33 1 6.1145 4.0190 1.1698 34 1 8.4837 3.0880 -3.5850 35 1 4.5964 -2.7546 -1.0410 36 1 5.3555 -2.2969 0.5026 37 1 3.8373 -3.2261 0.4985 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396414986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:38 Heat of formation + Delta-G solvation = 49.107491 kcal Electronic energy + Delta-G solvation = -19172.605941 eV Core-core repulsion = 16335.403482 eV Total energy + Delta-G solvation = -2837.202459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.57706 -38.64922 -37.26623 -35.24071 -34.86819 -33.15630 -31.64228 -28.80928 -28.53458 -27.64872 -27.22683 -23.88143 -22.30965 -21.20638 -19.58210 -19.14561 -18.15384 -17.48389 -16.45986 -16.13735 -15.40159 -15.23463 -14.93250 -14.67445 -14.50485 -14.24510 -14.16237 -13.99494 -13.93957 -13.81208 -13.33841 -13.19339 -13.16972 -13.03527 -12.97240 -12.66625 -12.58184 -12.56011 -12.19402 -11.77036 -11.25650 -10.73434 -10.57447 -10.36214 -10.27071 -8.33966 -8.32649 -6.36951 -0.06255 0.41741 1.34202 1.39113 1.47000 1.71725 2.08499 2.17285 2.32770 2.98970 3.04234 3.10604 3.41229 3.66632 3.96491 4.26487 4.38779 4.46518 4.51981 4.61094 4.65406 4.67934 4.74942 4.78172 4.79040 4.86065 4.94925 4.97484 5.10396 5.18828 5.23177 5.34121 5.42414 5.58816 5.62772 6.10977 6.21863 6.57177 6.65218 6.70455 7.25924 7.32681 8.82679 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.006809 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.764964 B = 4110.932977 C = 4854.855136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.055 3.945 3 C -0.256 4.256 4 C 0.425 3.575 5 N -0.579 5.579 6 C 0.089 3.911 7 C 0.230 3.770 8 H 0.061 0.939 9 C -0.140 4.140 10 C -0.519 4.519 11 H 0.048 0.952 12 C 0.026 3.974 13 N -0.939 5.939 14 Si 0.927 3.073 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.244 1.244 18 N -0.582 5.582 19 C 0.232 3.768 20 C -0.111 4.111 21 C -0.191 4.191 22 C 0.301 3.699 23 N -0.474 5.474 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 -4.597 8.892 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.046 3.954 3 C -0.281 4.281 4 C 0.187 3.813 5 N -0.284 5.284 6 C -0.053 4.053 7 C 0.127 3.873 8 H 0.079 0.921 9 C -0.199 4.199 10 C -0.558 4.558 11 H 0.066 0.934 12 C -0.173 4.173 13 N -0.579 5.579 14 Si 0.752 3.248 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.168 1.168 18 N -0.302 5.302 19 C 0.087 3.913 20 C -0.169 4.169 21 C -0.202 4.202 22 C -0.012 4.012 23 N -0.152 5.152 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.183 0.817 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.994 -5.790 8.758 15.202 hybrid contribution 0.366 0.039 -0.456 0.586 sum -10.628 -5.751 8.302 14.661 Atomic orbital electron populations 1.20970 0.87689 1.04260 1.04425 1.19961 0.97582 0.89923 0.87915 1.21113 0.91506 1.00320 1.15186 1.18954 0.89187 0.86286 0.86845 1.47222 1.07055 1.03052 1.71048 1.21846 0.97417 0.84055 1.01999 1.19162 0.77034 0.97654 0.93424 0.92108 1.22097 1.00081 1.00813 0.96911 1.21421 1.12346 1.12229 1.09807 0.93414 1.25678 0.97713 0.99502 0.94393 1.70016 1.26560 1.40156 1.21127 0.86035 0.77493 0.80754 0.80483 1.19927 1.21369 1.16775 1.67143 1.40714 0.97576 1.24731 1.21304 0.89519 0.93395 0.87078 1.20893 1.00560 0.91264 1.04149 1.16387 0.92451 0.87563 1.23768 1.25220 0.92153 0.92053 0.91789 1.81222 1.09828 1.11476 1.12642 0.88331 0.91771 0.88245 0.81738 0.91078 0.91886 0.89378 0.93446 0.93360 0.92626 0.92458 0.89235 0.89624 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.67 71.24 0.69 -1.24 16 2 C 0.06 1.33 5.91 -19.67 -0.12 1.22 16 3 C -0.26 -6.78 8.89 22.22 0.20 -6.59 16 4 C 0.43 14.80 7.36 133.19 0.98 15.78 16 5 N -0.58 -21.49 2.86 -708.94 -2.03 -23.52 16 6 C 0.09 2.57 9.43 127.77 1.20 3.77 16 7 C 0.23 10.10 2.32 44.24 0.10 10.20 16 8 H 0.06 2.85 3.95 -2.39 -0.01 2.84 16 9 C -0.14 -5.40 9.10 71.98 0.65 -4.74 16 10 C -0.52 -27.52 8.72 25.60 0.22 -27.30 16 11 H 0.05 2.75 6.82 -2.91 -0.02 2.73 16 12 C 0.03 1.46 5.47 84.66 0.46 1.92 16 13 N -0.94 -56.33 13.96 21.45 0.30 -56.03 16 14 Si 0.93 43.67 26.99 68.60 1.85 45.52 16 15 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.24 -10.69 6.82 99.48 0.68 -10.01 16 18 N -0.58 -21.53 8.73 -180.35 -1.58 -23.11 16 19 C 0.23 7.20 6.82 42.92 0.29 7.49 16 20 C -0.11 -2.87 9.78 71.24 0.70 -2.17 16 21 C -0.19 -5.27 5.75 -21.19 -0.12 -5.39 16 22 C 0.30 8.23 12.42 88.33 1.10 9.32 16 23 N -0.47 -14.09 18.54 19.00 0.35 -13.74 16 24 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.14 7.18 -2.38 -0.02 1.13 16 26 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.17 3.34 5.98 -2.91 -0.02 3.33 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 2.10 6.56 -2.39 -0.02 2.08 16 30 H 0.09 2.01 5.94 -2.39 -0.01 2.00 16 31 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 2.02 7.84 -2.39 -0.02 2.00 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 37 H 0.08 1.92 7.08 -2.39 -0.02 1.90 16 Total: -1.00 -65.40 310.36 6.32 -59.08 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.06 Total: 9.51 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.36 Total: 2.28 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -2.95 Total: -116.39 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.85 Total: 45.52 kcal Total: -65.40 6.32 -59.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396414986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.184 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds