Wall clock time and date at job start Mon Mar 30 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46936 * 299.99548 * 3 2 1 6 6 H 1.48501 * 109.47297 * 59.99787 * 3 2 1 7 7 C 1.37879 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99796 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.76964 * 56.79785 * 9 7 2 11 11 C 1.55143 * 110.70281 * 293.59424 * 9 7 2 12 12 C 1.54912 * 101.65206 * 205.96893 * 11 9 7 13 13 N 1.47842 * 104.79890 * 37.06944 * 12 11 9 14 14 C 1.46896 * 111.00352 * 213.63885 * 13 12 11 15 15 C 1.53000 * 109.46993 * 290.84607 * 14 13 12 16 16 H 1.09002 * 110.01554 * 306.39098 * 15 14 13 17 17 C 1.54266 * 110.07584 * 67.80619 * 15 14 13 18 18 C 1.54893 * 104.19500 * 142.92024 * 17 15 14 19 19 C 1.54887 * 102.74533 * 322.05712 * 18 17 15 20 20 C 1.53872 * 110.03213 * 185.00103 * 15 14 13 21 21 F 1.39904 * 110.03694 * 121.38116 * 20 15 14 22 22 F 1.39904 * 110.03278 * 359.94672 * 20 15 14 23 23 C 1.47440 * 108.56356 * 335.90792 * 13 12 11 24 24 H 0.96997 * 120.00318 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.99076 * 324.05739 * 11 9 7 26 26 H 1.09004 * 110.99061 * 87.87894 * 11 9 7 27 27 H 1.09001 * 110.37026 * 278.24187 * 12 11 9 28 28 H 1.08993 * 110.37389 * 155.90461 * 12 11 9 29 29 H 1.08997 * 109.47413 * 170.84395 * 14 13 12 30 30 H 1.09007 * 109.47203 * 50.83864 * 14 13 12 31 31 H 1.09002 * 110.48438 * 261.59643 * 17 15 14 32 32 H 1.09001 * 110.48592 * 24.23819 * 17 15 14 33 33 H 1.09001 * 110.75228 * 203.74448 * 18 17 15 34 34 H 1.09000 * 110.75571 * 80.37081 * 18 17 15 35 35 H 1.09001 * 110.48816 * 279.26329 * 19 18 17 36 36 H 1.09004 * 110.48531 * 156.62545 * 19 18 17 37 37 H 1.08999 * 109.88905 * 120.39532 * 23 13 12 38 38 H 1.09002 * 109.89019 * 241.41948 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5747 -2.5550 -0.8525 11 6 0.4732 -2.6834 1.3302 12 6 0.3728 -4.2265 1.4227 13 7 1.6617 -4.7211 0.8938 14 6 1.4855 -5.9954 0.1845 15 6 1.1361 -7.0946 1.1898 16 1 1.8809 -7.1232 1.9852 17 6 -0.2640 -6.8414 1.7860 18 6 -0.8742 -8.2571 1.9370 19 6 -0.3659 -8.9854 0.6680 20 6 1.0713 -8.4577 0.4790 21 9 1.9869 -9.3437 1.0571 22 9 1.3493 -8.3016 -0.8832 23 6 2.2282 -3.6935 0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 1.0357 -2.2776 2.1710 26 1 -0.5165 -2.2306 1.2696 27 1 -0.4530 -4.5903 0.8113 28 1 0.2438 -4.5368 2.4595 29 1 2.4100 -6.2551 -0.3311 30 1 0.6790 -5.8982 -0.5423 31 1 -0.1825 -6.3554 2.7582 32 1 -0.8647 -6.2376 1.1058 33 1 -1.9631 -8.2094 1.9450 34 1 -0.5011 -8.7444 2.8377 35 1 -0.9831 -8.7279 -0.1927 36 1 -0.3588 -10.0641 0.8244 37 1 3.2022 -3.3754 0.3731 38 1 2.3293 -4.0935 -1.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397622702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:11 Heat of formation + Delta-G solvation = -110.220817 kcal Electronic energy + Delta-G solvation = -20297.136005 eV Core-core repulsion = 17002.335365 eV Total energy + Delta-G solvation = -3294.800640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.91541 -46.97226 -38.85709 -36.81252 -33.25718 -31.37075 -28.86489 -28.45909 -27.57639 -24.65281 -23.61253 -21.42917 -20.17474 -19.87516 -19.49783 -17.61985 -16.91206 -16.41086 -15.99572 -15.06985 -14.73580 -14.45707 -14.37425 -13.84782 -13.77187 -13.73592 -13.28207 -12.91539 -12.41524 -12.23167 -12.00426 -11.88693 -11.65396 -11.34184 -11.18232 -11.01515 -10.90584 -10.70065 -10.56815 -10.53726 -10.42711 -10.00787 -9.62244 -9.28737 -8.85706 -8.40102 -7.63573 -6.03712 -4.05908 3.29266 3.37438 3.41821 3.68181 3.87184 4.11719 4.29509 4.43203 4.71499 4.97023 5.06438 5.11045 5.20806 5.28296 5.30185 5.44718 5.50465 5.71118 5.76333 5.87075 5.90376 5.92485 6.04417 6.14595 6.24133 6.31453 6.36661 6.57393 6.86535 7.13681 7.16946 7.56444 7.59849 7.77092 7.88620 7.98085 8.40781 8.96213 9.58231 11.06530 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.044787 B = 0.004517 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.029651 B = 6197.889608 C = 6498.582475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.034 3.966 10 H 0.030 0.970 11 C -0.107 4.107 12 C 0.033 3.967 13 N -0.531 5.531 14 C 0.061 3.939 15 C -0.124 4.124 16 H 0.106 0.894 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.161 4.161 20 C 0.283 3.717 21 F -0.201 7.201 22 F -0.198 7.198 23 C 0.048 3.952 24 H 0.259 0.741 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -16.255 3.059 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.015 3.985 10 H 0.048 0.952 11 C -0.146 4.146 12 C -0.095 4.095 13 N -0.255 5.255 14 C -0.067 4.067 15 C -0.143 4.143 16 H 0.124 0.876 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.199 4.199 20 C 0.246 3.754 21 F -0.182 7.182 22 F -0.179 7.179 23 C -0.079 4.079 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.259 -16.246 3.434 16.758 hybrid contribution 0.060 0.920 -0.831 1.241 sum -2.199 -15.327 2.604 15.701 Atomic orbital electron populations 1.69966 1.05942 1.26408 1.50665 1.24977 0.94840 0.99105 0.95009 0.86551 0.80226 0.83807 0.77522 1.19718 1.21094 1.21046 1.21119 0.92845 0.90172 1.50632 0.92390 1.19815 0.92841 0.92097 0.93740 0.95196 1.22672 1.01361 0.90400 1.00162 1.23430 0.89563 0.98062 0.98408 1.63565 1.24473 1.02523 1.34954 1.22152 1.00771 0.90192 0.93623 1.22739 1.00592 0.91356 0.99632 0.87585 1.22754 0.94115 0.96526 1.02472 1.22534 1.01223 0.95927 0.96577 1.23348 0.93131 1.02009 1.01380 1.21910 0.88059 0.89984 0.75425 1.92997 1.69939 1.71006 1.84248 1.92989 1.94916 1.96079 1.33931 1.22999 1.00042 0.92033 0.92850 0.93123 0.92503 0.91286 0.94517 0.91773 0.90846 0.94343 0.89661 0.89965 0.90146 0.90690 0.88529 0.89299 0.91186 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 12.48 55.43 0.69 -24.73 16 2 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.92 8.47 -34.44 -0.29 -14.21 16 8 H 0.06 1.57 7.53 -52.49 -0.40 1.18 16 9 C 0.03 0.85 2.78 -89.95 -0.25 0.60 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.45 5.94 -24.59 -0.15 -2.60 16 12 C 0.03 0.60 4.90 -2.30 -0.01 0.59 16 13 N -0.53 -9.89 5.16 -231.26 -1.19 -11.08 16 14 C 0.06 0.98 3.34 -3.83 -0.01 0.97 16 15 C -0.12 -1.63 2.98 -89.50 -0.27 -1.90 16 16 H 0.11 1.45 8.02 -51.93 -0.42 1.03 16 17 C -0.12 -1.37 4.56 -25.07 -0.11 -1.49 16 18 C -0.13 -1.11 6.91 -24.74 -0.17 -1.28 16 19 C -0.16 -1.54 6.40 -25.07 -0.16 -1.70 16 20 C 0.28 3.56 2.53 -25.61 -0.06 3.49 16 21 F -0.20 -2.72 17.04 2.25 0.04 -2.68 16 22 F -0.20 -2.83 15.45 2.25 0.03 -2.80 16 23 C 0.05 1.01 6.45 -2.84 -0.02 1.00 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 26 H 0.07 1.68 7.76 -51.93 -0.40 1.28 16 27 H 0.04 0.64 5.80 -51.93 -0.30 0.34 16 28 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 29 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 30 H 0.04 0.63 7.67 -51.92 -0.40 0.23 16 31 H 0.08 0.96 6.83 -51.93 -0.35 0.60 16 32 H 0.08 1.00 5.74 -51.93 -0.30 0.70 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 37 H 0.07 1.54 7.63 -51.93 -0.40 1.14 16 38 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -28.38 297.33 -8.33 -36.71 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.76 Total: -1.19 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.60 Total: -14.91 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.50 Total: -35.81 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.07 Total: -5.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.38 -8.33 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397622702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.511 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds