Wall clock time and date at job start Mon Mar 30 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46936 * 299.99548 * 3 2 1 6 6 H 1.48501 * 109.47297 * 59.99787 * 3 2 1 7 7 C 1.37879 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99796 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.76964 * 56.79785 * 9 7 2 11 11 C 1.55143 * 110.70281 * 293.59424 * 9 7 2 12 12 C 1.54912 * 101.65206 * 205.96893 * 11 9 7 13 13 N 1.47842 * 104.79890 * 37.06944 * 12 11 9 14 14 C 1.46896 * 111.00352 * 213.63885 * 13 12 11 15 15 C 1.53000 * 109.46993 * 290.84607 * 14 13 12 16 16 H 1.09002 * 110.01554 * 306.39098 * 15 14 13 17 17 C 1.54266 * 110.07584 * 67.80619 * 15 14 13 18 18 C 1.54893 * 104.19500 * 142.92024 * 17 15 14 19 19 C 1.54887 * 102.74533 * 322.05712 * 18 17 15 20 20 C 1.53872 * 110.03213 * 185.00103 * 15 14 13 21 21 F 1.39904 * 110.03694 * 121.38116 * 20 15 14 22 22 F 1.39904 * 110.03278 * 359.94672 * 20 15 14 23 23 C 1.47440 * 108.56356 * 335.90792 * 13 12 11 24 24 H 0.96997 * 120.00318 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.99076 * 324.05739 * 11 9 7 26 26 H 1.09004 * 110.99061 * 87.87894 * 11 9 7 27 27 H 1.09001 * 110.37026 * 278.24187 * 12 11 9 28 28 H 1.08993 * 110.37389 * 155.90461 * 12 11 9 29 29 H 1.08997 * 109.47413 * 170.84395 * 14 13 12 30 30 H 1.09007 * 109.47203 * 50.83864 * 14 13 12 31 31 H 1.09002 * 110.48438 * 261.59643 * 17 15 14 32 32 H 1.09001 * 110.48592 * 24.23819 * 17 15 14 33 33 H 1.09001 * 110.75228 * 203.74448 * 18 17 15 34 34 H 1.09000 * 110.75571 * 80.37081 * 18 17 15 35 35 H 1.09001 * 110.48816 * 279.26329 * 19 18 17 36 36 H 1.09004 * 110.48531 * 156.62545 * 19 18 17 37 37 H 1.08999 * 109.88905 * 120.39532 * 23 13 12 38 38 H 1.09002 * 109.89019 * 241.41948 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5747 -2.5550 -0.8525 11 6 0.4732 -2.6834 1.3302 12 6 0.3728 -4.2265 1.4227 13 7 1.6617 -4.7211 0.8938 14 6 1.4855 -5.9954 0.1845 15 6 1.1361 -7.0946 1.1898 16 1 1.8809 -7.1232 1.9852 17 6 -0.2640 -6.8414 1.7860 18 6 -0.8742 -8.2571 1.9370 19 6 -0.3659 -8.9854 0.6680 20 6 1.0713 -8.4577 0.4790 21 9 1.9869 -9.3437 1.0571 22 9 1.3493 -8.3016 -0.8832 23 6 2.2282 -3.6935 0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 1.0357 -2.2776 2.1710 26 1 -0.5165 -2.2306 1.2696 27 1 -0.4530 -4.5903 0.8113 28 1 0.2438 -4.5368 2.4595 29 1 2.4100 -6.2551 -0.3311 30 1 0.6790 -5.8982 -0.5423 31 1 -0.1825 -6.3554 2.7582 32 1 -0.8647 -6.2376 1.1058 33 1 -1.9631 -8.2094 1.9450 34 1 -0.5011 -8.7444 2.8377 35 1 -0.9831 -8.7279 -0.1927 36 1 -0.3588 -10.0641 0.8244 37 1 3.2022 -3.3754 0.3731 38 1 2.3293 -4.0935 -1.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397622702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:10 Heat of formation + Delta-G solvation = -126.508287 kcal Electronic energy + Delta-G solvation = -20297.842283 eV Core-core repulsion = 17002.335365 eV Total energy + Delta-G solvation = -3295.506917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.94140 -48.01264 -40.26743 -38.00556 -35.10224 -32.95601 -30.29700 -29.99385 -28.63802 -26.46174 -25.06045 -22.43708 -21.37952 -21.30107 -21.21690 -18.71254 -18.55795 -17.80170 -16.97891 -16.71602 -16.32238 -15.85399 -15.59821 -15.14118 -14.92803 -14.80596 -14.39395 -14.35258 -13.94629 -13.86493 -13.26699 -13.10471 -13.02932 -12.90706 -12.69357 -12.55130 -12.32844 -12.14968 -11.96483 -11.77765 -11.61301 -11.41107 -11.32290 -11.13549 -10.87985 -10.48773 -9.19566 -8.15345 -6.24471 1.39914 1.42020 1.53561 2.42317 2.65900 2.94345 3.14362 3.16755 3.32426 3.50175 3.96853 4.05020 4.11443 4.22615 4.26289 4.33110 4.45869 4.46388 4.54726 4.59853 4.73393 4.75485 4.86982 4.87945 4.99576 5.08732 5.12667 5.21145 5.26364 5.33495 5.39101 5.57416 5.72239 5.86749 6.12806 6.24306 6.34502 6.83955 7.42972 8.94558 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.044787 B = 0.004517 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.029651 B = 6197.889608 C = 6498.582475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.026 3.974 10 H -0.001 1.001 11 C -0.102 4.102 12 C 0.048 3.952 13 N -0.530 5.530 14 C 0.063 3.937 15 C -0.121 4.121 16 H 0.103 0.897 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.275 3.725 21 F -0.208 7.208 22 F -0.212 7.212 23 C 0.058 3.942 24 H 0.261 0.739 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 -17.439 3.904 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.006 3.994 10 H 0.017 0.983 11 C -0.141 4.141 12 C -0.079 4.079 13 N -0.254 5.254 14 C -0.065 4.065 15 C -0.140 4.140 16 H 0.121 0.879 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.193 4.193 20 C 0.239 3.761 21 F -0.189 7.189 22 F -0.193 7.193 23 C -0.070 4.070 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.611 -17.448 4.281 18.154 hybrid contribution 0.192 1.276 -1.127 1.713 sum -2.420 -16.172 3.155 16.654 Atomic orbital electron populations 1.70076 1.07232 1.27270 1.51303 1.25739 0.95675 1.02406 0.94643 0.85545 0.79104 0.79637 0.77625 1.19168 1.20635 1.20503 1.21454 0.92921 0.91677 1.50748 0.92816 1.19784 0.93223 0.92837 0.93521 0.98308 1.22473 0.99448 0.93780 0.98369 1.23363 0.89821 0.94438 1.00285 1.63574 1.24607 1.02732 1.34536 1.22163 1.00422 0.89667 0.94274 1.22691 1.01861 0.90720 0.98749 0.87907 1.22739 0.92760 0.98318 1.02147 1.22528 1.02329 0.93814 0.96548 1.23390 0.90720 1.03068 1.02103 1.22235 0.89617 0.89710 0.74544 1.92984 1.70491 1.71102 1.84284 1.92964 1.95144 1.96153 1.35003 1.22761 0.98853 0.91633 0.93709 0.92994 0.94055 0.93385 0.93340 0.89039 0.91471 0.94740 0.89266 0.90764 0.88096 0.89616 0.87860 0.87618 0.92038 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 12.48 21.45 0.27 -53.10 16 2 C 0.01 0.80 5.36 84.66 0.45 1.25 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.53 -29.54 8.47 25.60 0.22 -29.33 16 8 H 0.05 2.96 7.53 -2.91 -0.02 2.94 16 9 C 0.03 1.31 2.78 -10.36 -0.03 1.28 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.10 -4.73 5.94 31.98 0.19 -4.54 16 12 C 0.05 1.70 4.90 86.78 0.42 2.13 16 13 N -0.53 -19.35 5.16 -885.56 -4.57 -23.93 16 14 C 0.06 1.96 3.34 86.30 0.29 2.25 16 15 C -0.12 -2.96 2.98 -10.07 -0.03 -2.99 16 16 H 0.10 2.61 8.02 -2.39 -0.02 2.59 16 17 C -0.12 -2.44 4.56 31.67 0.14 -2.29 16 18 C -0.11 -1.62 6.91 31.89 0.22 -1.40 16 19 C -0.16 -2.50 6.40 31.67 0.20 -2.29 16 20 C 0.28 6.40 2.53 31.32 0.08 6.48 16 21 F -0.21 -5.26 17.04 44.97 0.77 -4.49 16 22 F -0.21 -5.81 15.45 44.97 0.69 -5.12 16 23 C 0.06 2.50 6.45 86.65 0.56 3.06 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 25 H 0.04 2.00 8.04 -2.39 -0.02 1.98 16 26 H 0.05 2.39 7.76 -2.39 -0.02 2.37 16 27 H 0.05 1.63 5.80 -2.39 -0.01 1.62 16 28 H 0.09 2.80 6.55 -2.39 -0.02 2.78 16 29 H 0.07 2.16 7.65 -2.39 -0.02 2.14 16 30 H 0.03 1.10 7.67 -2.38 -0.02 1.09 16 31 H 0.09 1.72 6.83 -2.39 -0.02 1.70 16 32 H 0.07 1.62 5.74 -2.39 -0.01 1.60 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.55 8.12 -2.39 -0.02 1.53 16 36 H 0.11 1.39 8.11 -2.38 -0.02 1.37 16 37 H 0.06 2.74 7.63 -2.39 -0.02 2.72 16 38 H 0.04 1.59 7.55 -2.39 -0.02 1.57 16 Total: -1.00 -61.46 297.33 2.95 -58.52 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.04 Total: 8.67 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 2.72 Total: -26.40 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -4.30 Total: -77.03 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 1.46 Total: -9.61 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.46 2.95 -58.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397622702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.992 kcal (2) G-P(sol) polarization free energy of solvation -61.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds