Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48495 * 109.46930 * 239.99761 * 3 2 1 5 5 H 1.48501 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46846 * 120.00137 * 3 2 1 7 7 C 1.37874 * 119.99369 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00556 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.90375 * 62.41389 * 9 7 2 11 11 C 1.55140 * 110.98925 * 298.54821 * 9 7 2 12 12 C 1.54324 * 103.01888 * 206.25481 * 11 9 7 13 13 N 1.47436 * 107.23089 * 22.28261 * 12 11 9 14 14 C 1.46906 * 110.99898 * 123.25894 * 13 12 11 15 15 C 1.52995 * 109.46837 * 69.87309 * 14 13 12 16 16 H 1.09002 * 110.01838 * 306.38918 * 15 14 13 17 17 C 1.54268 * 110.03347 * 184.99920 * 15 14 13 18 18 C 1.54887 * 104.20010 * 217.10711 * 17 15 14 19 19 C 1.54890 * 102.74754 * 37.94189 * 18 17 15 20 20 C 1.53879 * 110.03297 * 67.83433 * 15 14 13 21 21 F 1.39898 * 110.03065 * 238.56414 * 20 15 14 22 22 F 1.39896 * 110.03418 * 0.02562 * 20 15 14 23 23 C 1.47851 * 108.57089 * 0.99176 * 13 12 11 24 24 H 0.97003 * 119.99602 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.70515 * 87.86993 * 11 9 7 26 26 H 1.08998 * 110.85769 * 324.70591 * 11 9 7 27 27 H 1.08998 * 109.88582 * 262.87896 * 12 11 9 28 28 H 1.08996 * 110.01912 * 141.76799 * 12 11 9 29 29 H 1.09003 * 109.46997 * 189.87106 * 14 13 12 30 30 H 1.08999 * 109.47193 * 309.87069 * 14 13 12 31 31 H 1.08996 * 110.48365 * 335.78652 * 17 15 14 32 32 H 1.09003 * 110.48468 * 98.29014 * 17 15 14 33 33 H 1.09001 * 110.75968 * 156.25580 * 18 17 15 34 34 H 1.09005 * 110.75205 * 279.44253 * 18 17 15 35 35 H 1.08994 * 110.48452 * 80.73717 * 19 18 17 36 36 H 1.09006 * 110.48478 * 203.38365 * 19 18 17 37 37 H 1.08997 * 110.37354 * 94.73217 * 23 13 12 38 38 H 1.08994 * 110.37029 * 217.07440 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6477 -2.6000 -0.9028 11 6 0.3740 -2.6346 1.2721 12 6 0.2539 -4.1628 1.4505 13 7 1.3920 -4.7761 0.7417 14 6 2.1863 -5.6156 1.6485 15 6 1.3836 -6.8631 2.0228 16 1 0.4088 -6.5753 2.4166 17 6 2.1534 -7.6919 3.0717 18 6 1.8642 -9.1625 2.6808 19 6 1.8793 -9.1139 1.1327 20 6 1.2092 -7.7673 0.7899 21 9 -0.1510 -7.9620 0.5270 22 9 1.8351 -7.1901 -0.3201 23 6 2.2185 -3.6986 0.1570 24 1 -0.4850 0.8401 0.0004 25 1 -0.6069 -2.1868 1.1137 26 1 0.8674 -2.1837 2.1331 27 1 -0.6839 -4.5137 1.0198 28 1 0.2945 -4.4192 2.5091 29 1 3.1101 -5.9133 1.1523 30 1 2.4238 -5.0521 2.5508 31 1 3.2218 -7.4845 3.0124 32 1 1.7798 -7.4808 4.0737 33 1 2.6471 -9.8227 3.0542 34 1 0.8879 -9.4757 3.0508 35 1 2.9034 -9.1362 0.7604 36 1 1.3039 -9.9424 0.7195 37 1 3.0365 -3.4404 0.8295 38 1 2.6067 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397622704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = -128.485240 kcal Electronic energy + Delta-G solvation = -20458.251627 eV Core-core repulsion = 17162.658982 eV Total energy + Delta-G solvation = -3295.592644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.68077 -47.76989 -39.99904 -38.12250 -35.14555 -32.92049 -30.10287 -30.01204 -28.56184 -26.52658 -24.88663 -22.14287 -21.95106 -21.42803 -20.64851 -18.63493 -18.38441 -17.57938 -17.00058 -16.69850 -16.39721 -16.11578 -15.26773 -15.10781 -14.91877 -14.36819 -14.20092 -14.14056 -14.04797 -13.77363 -13.44192 -13.03962 -12.97776 -12.76502 -12.61241 -12.54694 -12.26663 -12.19114 -12.06064 -11.73338 -11.54016 -11.51743 -11.33966 -11.11350 -10.91524 -10.51140 -9.13679 -8.14827 -6.26549 1.40816 1.42709 1.50459 2.41327 2.93809 3.04389 3.14984 3.17183 3.43748 3.53934 4.01355 4.07286 4.19482 4.31701 4.33581 4.37754 4.46505 4.47523 4.60456 4.62666 4.74059 4.75328 4.82215 4.88683 5.02945 5.10275 5.13405 5.19670 5.22108 5.30597 5.36914 5.56988 5.79037 5.88765 6.03905 6.31884 6.35097 6.82537 7.41635 8.94239 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.004705 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.959446 B = 5950.298414 C = 6018.344687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.038 3.962 10 H -0.003 1.003 11 C -0.106 4.106 12 C 0.049 3.951 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.127 4.127 16 H 0.088 0.912 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.157 4.157 20 C 0.276 3.724 21 F -0.219 7.219 22 F -0.205 7.205 23 C 0.065 3.935 24 H 0.261 0.739 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 -18.520 7.959 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.074 0.926 9 C 0.019 3.981 10 H 0.015 0.985 11 C -0.145 4.145 12 C -0.078 4.078 13 N -0.261 5.261 14 C -0.068 4.068 15 C -0.147 4.147 16 H 0.106 0.894 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.195 4.195 20 C 0.240 3.760 21 F -0.200 7.200 22 F -0.186 7.186 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.057 0.943 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.532 -18.725 7.523 20.683 hybrid contribution 0.088 1.911 0.000 1.913 sum 4.620 -16.814 7.523 18.991 Atomic orbital electron populations 1.70104 1.07399 1.27408 1.50862 1.25795 0.95674 1.02587 0.94478 0.85599 0.78343 0.78690 0.78957 1.19558 1.20954 1.19386 1.21357 0.93009 0.91594 1.51444 0.92553 1.19673 0.92919 0.92340 0.93147 0.98450 1.22442 1.00097 0.93440 0.98491 1.22789 0.94463 0.93898 0.96676 1.63569 1.09270 1.20809 1.32406 1.22271 0.96389 0.93156 0.95009 1.22898 1.02199 0.95008 0.94578 0.89368 1.22419 1.00861 0.93957 0.97728 1.22476 1.04007 0.96547 0.91965 1.23419 1.02966 0.93284 0.99869 1.22225 0.74306 0.95538 0.83936 1.92948 1.35878 1.96026 1.95124 1.92992 1.81916 1.86771 1.56929 1.22854 0.95240 0.90250 0.97916 0.92992 0.93578 0.94477 0.92488 0.92055 0.90104 0.93537 0.89486 0.88959 0.87498 0.90215 0.87568 0.88551 0.94304 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 12.12 21.45 0.26 -54.40 16 2 C 0.01 0.78 5.34 84.65 0.45 1.23 16 3 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -30.36 8.55 25.60 0.22 -30.14 16 8 H 0.06 3.10 7.79 -2.91 -0.02 3.07 16 9 C 0.04 2.04 2.96 -10.16 -0.03 2.01 16 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 11 C -0.11 -5.20 5.64 31.78 0.18 -5.03 16 12 C 0.05 1.99 6.13 86.65 0.53 2.52 16 13 N -0.54 -20.99 4.25 -885.55 -3.76 -24.75 16 14 C 0.06 1.79 3.25 86.30 0.28 2.07 16 15 C -0.13 -3.10 2.75 -10.07 -0.03 -3.13 16 16 H 0.09 2.32 6.95 -2.39 -0.02 2.30 16 17 C -0.11 -1.70 6.36 31.67 0.20 -1.50 16 18 C -0.11 -1.37 6.91 31.88 0.22 -1.15 16 19 C -0.16 -2.68 6.40 31.67 0.20 -2.47 16 20 C 0.28 7.37 2.44 31.32 0.08 7.45 16 21 F -0.22 -6.88 17.04 44.97 0.77 -6.11 16 22 F -0.21 -6.87 14.77 44.97 0.66 -6.20 16 23 C 0.06 2.87 6.12 86.77 0.53 3.41 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.05 2.47 7.54 -2.39 -0.02 2.45 16 26 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.13 6.96 -2.39 -0.02 2.11 16 29 H 0.08 2.33 7.56 -2.39 -0.02 2.32 16 30 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 31 H 0.09 1.18 7.85 -2.39 -0.02 1.16 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 36 H 0.10 1.49 8.11 -2.38 -0.02 1.47 16 37 H 0.04 1.67 7.70 -2.39 -0.02 1.65 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -65.76 303.62 3.82 -61.94 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.03 Total: 8.10 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 2.84 Total: -24.72 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.50 Total: -79.14 kcal Atomic # 9 Polarization: -13.75 SS G_CDS: 1.43 Total: -12.32 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.76 3.82 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397622704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.544 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds