Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99995 * 2 1 4 4 H 1.48506 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47374 * 299.99648 * 3 2 1 6 6 H 1.48501 * 109.47112 * 60.00224 * 3 2 1 7 7 C 1.37885 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99605 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00033 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.28584 * 300.69635 * 9 7 2 11 11 C 1.54265 * 110.32260 * 62.82328 * 9 7 2 12 12 C 1.54382 * 105.05996 * 118.99904 * 11 9 7 13 13 N 1.48563 * 104.59291 * 23.84898 * 12 11 9 14 14 C 1.46901 * 110.99795 * 200.96176 * 13 12 11 15 15 C 1.53005 * 109.47045 * 284.40956 * 14 13 12 16 16 H 1.08998 * 110.01492 * 56.17368 * 15 14 13 17 17 C 1.54271 * 110.03214 * 294.78516 * 15 14 13 18 18 C 1.54897 * 104.19347 * 217.10542 * 17 15 14 19 19 C 1.54889 * 102.74636 * 37.94273 * 18 17 15 20 20 C 1.53872 * 110.03273 * 177.56878 * 15 14 13 21 21 F 1.39908 * 110.03019 * 238.57079 * 20 15 14 22 22 F 1.39901 * 110.03264 * 359.97438 * 20 15 14 23 23 C 1.48556 * 104.22404 * 320.52017 * 13 12 11 24 24 H 0.96993 * 120.00188 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.32170 * 237.89216 * 11 9 7 26 26 H 1.08991 * 110.32739 * 0.09940 * 11 9 7 27 27 H 1.08994 * 110.41031 * 142.62681 * 12 11 9 28 28 H 1.09003 * 110.41065 * 264.95637 * 12 11 9 29 29 H 1.08997 * 109.47271 * 44.40925 * 14 13 12 30 30 H 1.09001 * 109.47093 * 164.41427 * 14 13 12 31 31 H 1.09005 * 110.48361 * 335.78075 * 17 15 14 32 32 H 1.09000 * 110.48956 * 98.42583 * 17 15 14 33 33 H 1.09001 * 110.75046 * 156.25548 * 18 17 15 34 34 H 1.08997 * 110.75505 * 279.62707 * 18 17 15 35 35 H 1.08997 * 110.49287 * 80.73825 * 19 18 17 36 36 H 1.09003 * 110.48130 * 203.24569 * 19 18 17 37 37 H 1.09004 * 110.40952 * 280.70519 * 23 13 12 38 38 H 1.08995 * 110.41084 * 158.26619 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6097 -2.5653 0.8794 11 6 0.4114 -2.6331 -1.2867 12 6 0.9582 -3.8923 -1.9931 13 7 1.5714 -4.6957 -0.9042 14 6 2.5482 -5.6521 -1.4419 15 6 1.8100 -6.8213 -2.0969 16 1 1.1297 -6.4505 -2.8635 17 6 1.0242 -7.6135 -1.0315 18 6 1.1589 -9.0900 -1.4800 19 6 2.6139 -9.1557 -2.0069 20 6 2.8206 -7.8013 -2.7181 21 9 2.5764 -7.9366 -4.0890 22 9 4.1252 -7.3423 -2.5067 23 6 2.2344 -3.6886 -0.0364 24 1 -0.4850 0.8400 0.0004 25 1 -0.6420 -2.7650 -1.0395 26 1 0.5456 -1.7558 -1.9193 27 1 0.1464 -4.4468 -2.4637 28 1 1.7090 -3.6168 -2.7337 29 1 3.1726 -5.1551 -2.1843 30 1 3.1745 -6.0259 -0.6319 31 1 1.4685 -7.4720 -0.0462 32 1 -0.0228 -7.3105 -1.0259 33 1 1.0234 -9.7644 -0.6345 34 1 0.4494 -9.3183 -2.2753 35 1 3.3150 -9.2633 -1.1793 36 1 2.7276 -9.9796 -2.7115 37 1 3.1864 -3.3815 -0.4695 38 1 2.3836 -4.0899 0.9659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397622706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = -115.145026 kcal Electronic energy + Delta-G solvation = -20186.572743 eV Core-core repulsion = 16891.558573 eV Total energy + Delta-G solvation = -3295.014169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.91803 -46.97738 -38.54598 -36.96424 -33.32142 -31.37996 -28.65765 -28.15000 -27.82898 -24.74716 -23.35022 -21.37830 -20.64207 -19.81428 -19.23223 -17.60617 -16.75051 -16.23134 -16.02499 -15.08042 -14.80954 -14.48469 -14.37149 -14.13591 -13.68081 -13.56429 -13.28777 -13.10963 -12.43670 -12.19914 -12.01242 -11.76871 -11.61372 -11.30995 -11.05994 -10.95177 -10.81542 -10.70335 -10.59765 -10.47611 -10.35683 -10.19783 -9.74152 -9.26463 -8.72592 -8.38642 -7.84737 -6.02067 -4.05730 3.28979 3.37279 3.41029 3.68034 3.87998 4.12558 4.29251 4.42881 4.73518 4.97742 5.06138 5.13853 5.21867 5.31186 5.34467 5.43264 5.52872 5.71591 5.78108 5.84125 5.94050 5.99840 6.09436 6.19893 6.27654 6.27878 6.41083 6.54210 6.86660 7.10579 7.17908 7.52800 7.68111 7.69470 7.88551 7.99812 8.46201 8.97705 9.58510 11.07313 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.040791 B = 0.004492 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.256407 B = 6232.314859 C = 6440.407843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.091 4.091 12 C 0.029 3.971 13 N -0.512 5.512 14 C 0.054 3.946 15 C -0.123 4.123 16 H 0.098 0.902 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.159 4.159 20 C 0.281 3.719 21 F -0.202 7.202 22 F -0.199 7.199 23 C 0.041 3.959 24 H 0.259 0.741 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.035 0.965 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -17.152 -3.798 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.130 4.130 12 C -0.098 4.098 13 N -0.235 5.235 14 C -0.075 4.075 15 C -0.143 4.143 16 H 0.116 0.884 17 C -0.138 4.138 18 C -0.164 4.164 19 C -0.197 4.197 20 C 0.244 3.756 21 F -0.183 7.183 22 F -0.179 7.179 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.026 -17.333 -3.535 17.806 hybrid contribution 1.264 1.465 -0.771 2.083 sum 3.291 -15.868 -4.305 16.767 Atomic orbital electron populations 1.69991 1.05848 1.26388 1.50299 1.24964 0.94826 0.98995 0.95134 0.86588 0.80176 0.83977 0.77578 1.19829 1.21070 1.21001 1.21243 0.92751 0.90460 1.50975 0.92693 1.19367 0.92408 0.90943 0.94353 0.94760 1.22204 0.98507 0.93765 0.98545 1.23240 0.97734 0.95628 0.93237 1.65335 1.27452 1.14605 1.16144 1.22164 0.93720 0.93204 0.98407 1.22728 0.96542 0.95294 0.99740 0.88418 1.22251 1.01313 0.92062 0.98179 1.22549 0.94474 0.98084 1.01312 1.23347 1.00155 0.94674 1.01561 1.21977 0.79659 0.96360 0.77561 1.92998 1.94188 1.96784 1.34285 1.92986 1.39935 1.90481 1.94545 1.23281 0.97313 0.92586 0.95432 0.93087 0.93609 0.91622 0.92199 0.95032 0.94377 0.90732 0.90222 0.89958 0.90171 0.90792 0.88518 0.89377 0.94669 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 12.47 55.43 0.69 -24.72 16 2 C 0.06 1.73 5.11 -17.82 -0.09 1.64 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.10 8.35 -34.44 -0.29 -14.39 16 8 H 0.05 1.49 7.57 -52.49 -0.40 1.10 16 9 C 0.05 1.21 2.96 -90.39 -0.27 0.94 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.09 -2.15 5.80 -25.35 -0.15 -2.29 16 12 C 0.03 0.57 5.95 -2.18 -0.01 0.56 16 13 N -0.51 -9.46 5.09 -229.97 -1.17 -10.63 16 14 C 0.05 0.85 3.22 -3.82 -0.01 0.84 16 15 C -0.12 -1.63 2.84 -89.50 -0.25 -1.88 16 16 H 0.10 1.35 7.29 -51.93 -0.38 0.97 16 17 C -0.10 -1.12 6.13 -25.07 -0.15 -1.27 16 18 C -0.13 -1.09 6.91 -24.73 -0.17 -1.26 16 19 C -0.16 -1.48 6.41 -25.02 -0.16 -1.64 16 20 C 0.28 3.53 2.53 -25.56 -0.06 3.47 16 21 F -0.20 -2.79 17.04 2.25 0.04 -2.75 16 22 F -0.20 -2.83 15.47 2.25 0.03 -2.79 16 23 C 0.04 0.86 5.98 -2.19 -0.01 0.85 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.69 7.33 -51.93 -0.38 1.31 16 27 H 0.06 1.05 7.80 -51.93 -0.40 0.65 16 28 H 0.03 0.62 7.74 -51.93 -0.40 0.22 16 29 H 0.04 0.65 7.46 -51.93 -0.39 0.26 16 30 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 31 H 0.08 0.92 7.80 -51.93 -0.41 0.52 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.82 8.12 -51.93 -0.42 0.40 16 36 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.03 0.76 7.56 -51.93 -0.39 0.37 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -28.40 304.97 -8.54 -36.94 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.07 Total: -2.41 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.64 Total: -14.45 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.48 Total: -35.35 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.07 Total: -5.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.40 -8.54 -36.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397622706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.210 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds