Wall clock time and date at job start Mon Mar 30 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99995 * 2 1 4 4 H 1.48506 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47374 * 299.99648 * 3 2 1 6 6 H 1.48501 * 109.47112 * 60.00224 * 3 2 1 7 7 C 1.37885 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99605 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00033 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.28584 * 300.69635 * 9 7 2 11 11 C 1.54265 * 110.32260 * 62.82328 * 9 7 2 12 12 C 1.54382 * 105.05996 * 118.99904 * 11 9 7 13 13 N 1.48563 * 104.59291 * 23.84898 * 12 11 9 14 14 C 1.46901 * 110.99795 * 200.96176 * 13 12 11 15 15 C 1.53005 * 109.47045 * 284.40956 * 14 13 12 16 16 H 1.08998 * 110.01492 * 56.17368 * 15 14 13 17 17 C 1.54271 * 110.03214 * 294.78516 * 15 14 13 18 18 C 1.54897 * 104.19347 * 217.10542 * 17 15 14 19 19 C 1.54889 * 102.74636 * 37.94273 * 18 17 15 20 20 C 1.53872 * 110.03273 * 177.56878 * 15 14 13 21 21 F 1.39908 * 110.03019 * 238.57079 * 20 15 14 22 22 F 1.39901 * 110.03264 * 359.97438 * 20 15 14 23 23 C 1.48556 * 104.22404 * 320.52017 * 13 12 11 24 24 H 0.96993 * 120.00188 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.32170 * 237.89216 * 11 9 7 26 26 H 1.08991 * 110.32739 * 0.09940 * 11 9 7 27 27 H 1.08994 * 110.41031 * 142.62681 * 12 11 9 28 28 H 1.09003 * 110.41065 * 264.95637 * 12 11 9 29 29 H 1.08997 * 109.47271 * 44.40925 * 14 13 12 30 30 H 1.09001 * 109.47093 * 164.41427 * 14 13 12 31 31 H 1.09005 * 110.48361 * 335.78075 * 17 15 14 32 32 H 1.09000 * 110.48956 * 98.42583 * 17 15 14 33 33 H 1.09001 * 110.75046 * 156.25548 * 18 17 15 34 34 H 1.08997 * 110.75505 * 279.62707 * 18 17 15 35 35 H 1.08997 * 110.49287 * 80.73825 * 19 18 17 36 36 H 1.09003 * 110.48130 * 203.24569 * 19 18 17 37 37 H 1.09004 * 110.40952 * 280.70519 * 23 13 12 38 38 H 1.08995 * 110.41084 * 158.26619 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6097 -2.5653 0.8794 11 6 0.4114 -2.6331 -1.2867 12 6 0.9582 -3.8923 -1.9931 13 7 1.5714 -4.6957 -0.9042 14 6 2.5482 -5.6521 -1.4419 15 6 1.8100 -6.8213 -2.0969 16 1 1.1297 -6.4505 -2.8635 17 6 1.0242 -7.6135 -1.0315 18 6 1.1589 -9.0900 -1.4800 19 6 2.6139 -9.1557 -2.0069 20 6 2.8206 -7.8013 -2.7181 21 9 2.5764 -7.9366 -4.0890 22 9 4.1252 -7.3423 -2.5067 23 6 2.2344 -3.6886 -0.0364 24 1 -0.4850 0.8400 0.0004 25 1 -0.6420 -2.7650 -1.0395 26 1 0.5456 -1.7558 -1.9193 27 1 0.1464 -4.4468 -2.4637 28 1 1.7090 -3.6168 -2.7337 29 1 3.1726 -5.1551 -2.1843 30 1 3.1745 -6.0259 -0.6319 31 1 1.4685 -7.4720 -0.0462 32 1 -0.0228 -7.3105 -1.0259 33 1 1.0234 -9.7644 -0.6345 34 1 0.4494 -9.3183 -2.2753 35 1 3.3150 -9.2633 -1.1793 36 1 2.7276 -9.9796 -2.7115 37 1 3.1864 -3.3815 -0.4695 38 1 2.3836 -4.0899 0.9659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397622706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:15 Heat of formation + Delta-G solvation = -131.116360 kcal Electronic energy + Delta-G solvation = -20187.265312 eV Core-core repulsion = 16891.558573 eV Total energy + Delta-G solvation = -3295.706738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.94366 -48.01884 -40.00936 -38.11664 -35.16979 -32.97520 -30.06685 -29.93073 -28.69900 -26.55405 -24.84686 -22.34971 -21.88522 -21.42325 -20.78302 -18.69102 -18.27097 -17.73484 -17.05776 -16.67184 -16.57922 -15.87977 -15.51604 -15.22529 -14.92442 -14.83639 -14.51438 -14.36717 -14.08173 -13.63603 -13.40152 -13.00170 -12.90685 -12.86145 -12.57472 -12.51956 -12.15870 -12.07589 -12.03513 -11.73254 -11.68029 -11.53029 -11.51097 -11.14212 -10.78781 -10.49942 -9.41577 -8.14838 -6.25406 1.38874 1.40938 1.52002 2.40980 2.67145 2.95349 3.15175 3.16396 3.34130 3.50465 3.92214 4.08155 4.11309 4.26271 4.31066 4.36147 4.44999 4.51631 4.52371 4.60859 4.71261 4.77054 4.83023 4.88663 5.03260 5.10833 5.14087 5.24520 5.29408 5.31170 5.41796 5.60159 5.72058 5.86565 5.94619 6.17144 6.39356 6.85580 7.42458 8.94507 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.040791 B = 0.004492 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.256407 B = 6232.314859 C = 6440.407843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.040 3.960 10 H 0.003 0.997 11 C -0.084 4.084 12 C 0.041 3.959 13 N -0.504 5.504 14 C 0.057 3.943 15 C -0.122 4.122 16 H 0.090 0.910 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.152 4.152 20 C 0.273 3.727 21 F -0.210 7.210 22 F -0.211 7.211 23 C 0.052 3.948 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.028 0.972 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -18.769 -3.920 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.021 0.979 11 C -0.123 4.123 12 C -0.087 4.087 13 N -0.227 5.227 14 C -0.072 4.072 15 C -0.142 4.142 16 H 0.109 0.891 17 C -0.137 4.137 18 C -0.154 4.154 19 C -0.190 4.190 20 C 0.236 3.764 21 F -0.192 7.192 22 F -0.192 7.192 23 C -0.076 4.076 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.047 0.953 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.601 -18.966 -3.660 19.490 hybrid contribution 1.078 1.979 -0.731 2.370 sum 3.680 -16.986 -4.391 17.926 Atomic orbital electron populations 1.70103 1.07215 1.27263 1.50987 1.25727 0.95639 1.02347 0.94740 0.85576 0.79058 0.79784 0.77671 1.19233 1.20652 1.20445 1.21557 0.92810 0.91851 1.50998 0.93019 1.19339 0.92947 0.91996 0.93668 0.97872 1.21989 0.97824 0.94653 0.97823 1.23113 0.98357 0.94220 0.93025 1.65330 1.27953 1.13826 1.15637 1.22197 0.93321 0.93227 0.98440 1.22704 0.96630 0.94779 1.00087 0.89131 1.22242 1.00550 0.93656 0.97267 1.22539 0.94071 0.96455 1.02304 1.23386 1.00861 0.92845 1.01882 1.22332 0.78711 0.97985 0.77330 1.92980 1.94182 1.96870 1.35128 1.92962 1.40821 1.90839 1.94579 1.23060 0.95912 0.91898 0.96721 0.92979 0.94724 0.94484 0.89754 0.95173 0.95755 0.89808 0.90494 0.90317 0.87867 0.90113 0.87360 0.87814 0.95346 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.59 12.47 21.45 0.27 -53.33 16 2 C 0.01 0.82 5.11 84.66 0.43 1.25 16 3 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.53 -29.73 8.35 25.60 0.21 -29.52 16 8 H 0.05 2.84 7.57 -2.91 -0.02 2.82 16 9 C 0.04 2.02 2.96 -10.64 -0.03 1.99 16 10 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 11 C -0.08 -4.04 5.80 31.49 0.18 -3.86 16 12 C 0.04 1.57 5.95 86.45 0.51 2.09 16 13 N -0.50 -18.24 5.09 -881.50 -4.48 -22.73 16 14 C 0.06 1.72 3.22 86.30 0.28 2.00 16 15 C -0.12 -3.01 2.84 -10.07 -0.03 -3.04 16 16 H 0.09 2.36 7.29 -2.39 -0.02 2.35 16 17 C -0.10 -1.97 6.13 31.67 0.19 -1.78 16 18 C -0.12 -1.59 6.91 31.89 0.22 -1.37 16 19 C -0.15 -2.33 6.41 31.70 0.20 -2.13 16 20 C 0.27 6.32 2.53 31.35 0.08 6.40 16 21 F -0.21 -5.47 17.04 44.97 0.77 -4.70 16 22 F -0.21 -5.71 15.47 44.97 0.70 -5.01 16 23 C 0.05 2.17 5.98 86.45 0.52 2.69 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.95 7.33 -2.39 -0.02 1.94 16 27 H 0.08 2.86 7.80 -2.39 -0.02 2.84 16 28 H 0.03 1.17 7.74 -2.39 -0.02 1.15 16 29 H 0.02 0.81 7.46 -2.39 -0.02 0.79 16 30 H 0.08 2.40 7.89 -2.39 -0.02 2.38 16 31 H 0.08 1.58 7.80 -2.38 -0.02 1.56 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.45 8.12 -2.39 -0.02 1.43 16 36 H 0.10 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.03 1.22 7.56 -2.38 -0.02 1.21 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -61.54 304.97 3.07 -58.46 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.03 Total: 6.67 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 2.78 Total: -25.29 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -4.22 Total: -76.05 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 1.46 Total: -9.71 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -61.54 3.07 -58.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397622706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.656 kcal (2) G-P(sol) polarization free energy of solvation -61.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds