Wall clock time and date at job start Mon Mar 30 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48494 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47181 * 299.99959 * 3 2 1 6 6 H 1.48503 * 109.46992 * 60.00194 * 3 2 1 7 7 C 1.37878 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99973 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.64178 * 298.30020 * 9 7 2 11 11 C 1.54595 * 110.72594 * 61.44924 * 9 7 2 12 12 C 1.54000 * 105.13908 * 140.49315 * 11 9 7 13 13 N 1.47897 * 107.05567 * 1.22814 * 12 11 9 14 14 C 1.46901 * 111.00135 * 214.15137 * 13 12 11 15 15 C 1.53000 * 109.47172 * 294.31916 * 14 13 12 16 16 H 1.09001 * 110.67253 * 51.83343 * 15 14 13 17 17 C 1.54892 * 110.75672 * 175.07059 * 15 14 13 18 18 C 1.54266 * 104.19493 * 156.25589 * 17 15 14 19 19 C 1.53881 * 106.59971 * 336.38958 * 18 17 15 20 20 F 1.39898 * 110.03043 * 119.28745 * 19 18 17 21 21 F 1.39899 * 110.03123 * 240.67005 * 19 18 17 22 22 C 1.54269 * 106.59786 * 359.97438 * 19 18 17 23 23 C 1.48529 * 105.82398 * 334.66897 * 13 12 11 24 24 H 0.96994 * 120.00502 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.30661 * 21.58221 * 11 9 7 26 26 H 1.09000 * 110.39642 * 259.45586 * 11 9 7 27 27 H 1.08996 * 109.91509 * 241.87217 * 12 11 9 28 28 H 1.09004 * 110.07838 * 120.67101 * 12 11 9 29 29 H 1.08994 * 109.47747 * 174.31199 * 14 13 12 30 30 H 1.09004 * 109.46908 * 54.31386 * 14 13 12 31 31 H 1.08993 * 110.48705 * 274.93300 * 17 15 14 32 32 H 1.09004 * 110.48397 * 37.44591 * 17 15 14 33 33 H 1.08991 * 110.03189 * 95.67514 * 18 17 15 34 34 H 1.09001 * 110.02926 * 217.06208 * 18 17 15 35 35 H 1.09000 * 110.48663 * 264.93028 * 22 19 18 36 36 H 1.08996 * 110.48672 * 142.28564 * 22 19 18 37 37 H 1.09002 * 110.67330 * 157.64320 * 23 13 12 38 38 H 1.09003 * 110.66888 * 280.77278 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6399 -2.5900 0.8985 11 6 0.3797 -2.6278 -1.2698 12 6 0.5041 -4.1026 -1.6953 13 7 1.3717 -4.7694 -0.7003 14 6 2.1914 -5.8124 -1.3314 15 6 1.2846 -6.9329 -1.8444 16 1 0.4865 -6.5277 -2.4664 17 6 2.1056 -7.9896 -2.6244 18 6 1.2537 -9.2726 -2.5342 19 6 0.3629 -9.1220 -1.2885 20 9 -0.9862 -9.1577 -1.6570 21 9 0.6375 -10.1467 -0.3764 22 6 0.7051 -7.7531 -0.6648 23 6 2.2242 -3.6984 -0.1239 24 1 -0.4850 0.8400 0.0004 25 1 0.7579 -1.9741 -2.0558 26 1 -0.6588 -2.3854 -1.0442 27 1 0.9567 -4.1666 -2.6848 28 1 -0.4790 -4.5733 -1.7056 29 1 2.8908 -6.2171 -0.6000 30 1 2.7461 -5.3832 -2.1658 31 1 2.2288 -7.6859 -3.6639 32 1 3.0774 -8.1407 -2.1544 33 1 0.6349 -9.3733 -3.4257 34 1 1.9005 -10.1435 -2.4284 35 1 1.4496 -7.8682 0.1229 36 1 -0.1940 -7.2763 -0.2746 37 1 2.6005 -3.9917 0.8561 38 1 3.0472 -3.4578 -0.7969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397835188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:19 Heat of formation + Delta-G solvation = -118.964653 kcal Electronic energy + Delta-G solvation = -19854.679341 eV Core-core repulsion = 16559.499540 eV Total energy + Delta-G solvation = -3295.179801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.92350 -46.99818 -38.72365 -36.94998 -33.21101 -31.13299 -28.91143 -28.20830 -28.04603 -24.76519 -23.36960 -21.06717 -20.84524 -19.84517 -19.13807 -17.60836 -16.72965 -16.38522 -16.06142 -15.10835 -14.90236 -14.52856 -14.44113 -14.10927 -13.88038 -13.34940 -13.17219 -12.98062 -12.64989 -12.30665 -11.98245 -11.77063 -11.74754 -11.26732 -11.14483 -11.07690 -10.97393 -10.75535 -10.61641 -10.49577 -10.37720 -10.18938 -9.65208 -9.21683 -8.77075 -8.41071 -7.77921 -6.03219 -4.06766 3.28037 3.36392 3.39718 3.69041 3.89859 4.11380 4.26825 4.40767 4.61925 4.94944 5.05762 5.07712 5.19709 5.30096 5.31145 5.46633 5.59276 5.62590 5.75067 5.82023 5.89593 5.91417 6.04970 6.09226 6.23648 6.30009 6.41653 6.53883 6.83686 7.12170 7.16723 7.56078 7.66765 7.71212 7.86791 8.02668 8.43165 8.96119 9.57715 11.06552 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.049028 B = 0.003953 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.965167 B = 7081.850774 C = 7226.383239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.053 3.947 10 H 0.036 0.964 11 C -0.102 4.102 12 C 0.034 3.966 13 N -0.521 5.521 14 C 0.056 3.944 15 C -0.085 4.085 16 H 0.086 0.914 17 C -0.118 4.118 18 C -0.162 4.162 19 C 0.275 3.725 20 F -0.201 7.201 21 F -0.204 7.204 22 C -0.143 4.143 23 C 0.041 3.959 24 H 0.259 0.741 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -16.288 -5.422 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.034 3.966 10 H 0.054 0.946 11 C -0.141 4.141 12 C -0.094 4.094 13 N -0.245 5.245 14 C -0.072 4.072 15 C -0.104 4.104 16 H 0.104 0.896 17 C -0.156 4.156 18 C -0.200 4.200 19 C 0.239 3.761 20 F -0.182 7.182 21 F -0.185 7.185 22 C -0.181 4.181 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.307 -16.465 -5.007 17.363 hybrid contribution 0.731 1.132 -0.661 1.501 sum 3.038 -15.333 -5.668 16.627 Atomic orbital electron populations 1.69983 1.05877 1.26399 1.50262 1.24963 0.94822 0.99011 0.95035 0.86578 0.80143 0.83948 0.77579 1.19818 1.21096 1.20991 1.21131 0.92808 0.90417 1.51161 0.92608 1.19524 0.92070 0.90859 0.94189 0.94621 1.22312 1.01446 0.90555 0.99759 1.22983 0.96512 0.97166 0.92759 1.64750 1.19161 1.11239 1.29376 1.22198 0.94663 0.92905 0.97481 1.22118 0.98281 0.94590 0.95415 0.89563 1.22395 0.98659 0.93065 1.01471 1.23140 0.99147 1.00984 0.96704 1.22029 0.78022 0.87556 0.88484 1.93006 1.36083 1.97009 1.92094 1.92992 1.93484 1.62660 1.69376 1.23297 1.04461 0.91006 0.99292 1.23363 0.95731 0.91863 0.97651 0.93079 0.92833 0.92124 0.95458 0.92153 0.91078 0.94716 0.90385 0.90473 0.89004 0.89029 0.88473 0.88372 0.91899 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 12.44 55.43 0.69 -24.60 16 2 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.98 8.43 -34.44 -0.29 -14.27 16 8 H 0.06 1.49 7.78 -52.49 -0.41 1.08 16 9 C 0.05 1.30 2.98 -89.91 -0.27 1.03 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.10 -2.36 5.51 -25.37 -0.14 -2.50 16 12 C 0.03 0.63 5.54 -2.75 -0.02 0.61 16 13 N -0.52 -9.33 5.22 -230.46 -1.20 -10.53 16 14 C 0.06 0.79 4.17 -3.82 -0.02 0.77 16 15 C -0.09 -1.00 2.87 -88.61 -0.25 -1.26 16 16 H 0.09 1.09 7.16 -51.93 -0.37 0.72 16 17 C -0.12 -1.07 6.28 -25.07 -0.16 -1.22 16 18 C -0.16 -1.47 6.50 -25.61 -0.17 -1.64 16 19 C 0.28 3.24 2.57 -25.61 -0.07 3.17 16 20 F -0.20 -2.71 17.04 2.25 0.04 -2.67 16 21 F -0.20 -2.63 17.04 2.25 0.04 -2.59 16 22 C -0.14 -1.73 5.77 -25.05 -0.14 -1.87 16 23 C 0.04 0.84 5.98 -1.90 -0.01 0.83 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.05 1.31 7.84 -51.93 -0.41 0.91 16 26 H 0.06 1.49 8.05 -51.93 -0.42 1.07 16 27 H 0.03 0.48 7.64 -51.93 -0.40 0.08 16 28 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 30 H 0.03 0.49 7.94 -51.93 -0.41 0.08 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 34 H 0.09 0.72 8.02 -51.93 -0.42 0.31 16 35 H 0.10 1.14 7.91 -51.93 -0.41 0.72 16 36 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.70 7.93 -51.93 -0.41 0.29 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -28.22 307.76 -8.59 -36.80 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.15 Total: -2.36 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.62 Total: -14.69 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.51 Total: -35.14 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.08 Total: -5.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.22 -8.59 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397835188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.160 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds