Wall clock time and date at job start Mon Mar 30 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48494 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47181 * 299.99959 * 3 2 1 6 6 H 1.48503 * 109.46992 * 60.00194 * 3 2 1 7 7 C 1.37878 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99973 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.64178 * 298.30020 * 9 7 2 11 11 C 1.54595 * 110.72594 * 61.44924 * 9 7 2 12 12 C 1.54000 * 105.13908 * 140.49315 * 11 9 7 13 13 N 1.47897 * 107.05567 * 1.22814 * 12 11 9 14 14 C 1.46901 * 111.00135 * 214.15137 * 13 12 11 15 15 C 1.53000 * 109.47172 * 294.31916 * 14 13 12 16 16 H 1.09001 * 110.67253 * 51.83343 * 15 14 13 17 17 C 1.54892 * 110.75672 * 175.07059 * 15 14 13 18 18 C 1.54266 * 104.19493 * 156.25589 * 17 15 14 19 19 C 1.53881 * 106.59971 * 336.38958 * 18 17 15 20 20 F 1.39898 * 110.03043 * 119.28745 * 19 18 17 21 21 F 1.39899 * 110.03123 * 240.67005 * 19 18 17 22 22 C 1.54269 * 106.59786 * 359.97438 * 19 18 17 23 23 C 1.48529 * 105.82398 * 334.66897 * 13 12 11 24 24 H 0.96994 * 120.00502 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.30661 * 21.58221 * 11 9 7 26 26 H 1.09000 * 110.39642 * 259.45586 * 11 9 7 27 27 H 1.08996 * 109.91509 * 241.87217 * 12 11 9 28 28 H 1.09004 * 110.07838 * 120.67101 * 12 11 9 29 29 H 1.08994 * 109.47747 * 174.31199 * 14 13 12 30 30 H 1.09004 * 109.46908 * 54.31386 * 14 13 12 31 31 H 1.08993 * 110.48705 * 274.93300 * 17 15 14 32 32 H 1.09004 * 110.48397 * 37.44591 * 17 15 14 33 33 H 1.08991 * 110.03189 * 95.67514 * 18 17 15 34 34 H 1.09001 * 110.02926 * 217.06208 * 18 17 15 35 35 H 1.09000 * 110.48663 * 264.93028 * 22 19 18 36 36 H 1.08996 * 110.48672 * 142.28564 * 22 19 18 37 37 H 1.09002 * 110.67330 * 157.64320 * 23 13 12 38 38 H 1.09003 * 110.66888 * 280.77278 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6399 -2.5900 0.8985 11 6 0.3797 -2.6278 -1.2698 12 6 0.5041 -4.1026 -1.6953 13 7 1.3717 -4.7694 -0.7003 14 6 2.1914 -5.8124 -1.3314 15 6 1.2846 -6.9329 -1.8444 16 1 0.4865 -6.5277 -2.4664 17 6 2.1056 -7.9896 -2.6244 18 6 1.2537 -9.2726 -2.5342 19 6 0.3629 -9.1220 -1.2885 20 9 -0.9862 -9.1577 -1.6570 21 9 0.6375 -10.1467 -0.3764 22 6 0.7051 -7.7531 -0.6648 23 6 2.2242 -3.6984 -0.1239 24 1 -0.4850 0.8400 0.0004 25 1 0.7579 -1.9741 -2.0558 26 1 -0.6588 -2.3854 -1.0442 27 1 0.9567 -4.1666 -2.6848 28 1 -0.4790 -4.5733 -1.7056 29 1 2.8908 -6.2171 -0.6000 30 1 2.7461 -5.3832 -2.1658 31 1 2.2288 -7.6859 -3.6639 32 1 3.0774 -8.1407 -2.1544 33 1 0.6349 -9.3733 -3.4257 34 1 1.9005 -10.1435 -2.4284 35 1 1.4496 -7.8682 0.1229 36 1 -0.1940 -7.2763 -0.2746 37 1 2.6005 -3.9917 0.8561 38 1 3.0472 -3.4578 -0.7969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397835188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:18 Heat of formation + Delta-G solvation = -134.836151 kcal Electronic energy + Delta-G solvation = -19855.367581 eV Core-core repulsion = 16559.499540 eV Total energy + Delta-G solvation = -3295.868041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.88540 -47.97623 -40.05483 -38.14142 -35.06765 -32.69000 -29.96394 -29.93372 -29.16907 -26.49163 -24.75760 -22.17452 -21.88283 -21.46871 -20.59720 -18.61407 -18.28332 -17.64386 -17.14214 -16.72884 -16.49796 -15.96531 -15.47101 -15.24588 -15.00280 -14.41821 -14.35647 -14.27086 -14.11080 -13.85588 -13.42806 -13.01861 -12.93460 -12.71094 -12.64840 -12.59258 -12.21978 -12.17686 -11.95714 -11.77588 -11.57001 -11.52777 -11.42326 -11.04365 -10.79361 -10.50516 -9.22103 -8.13365 -6.24083 1.40550 1.42508 1.53742 2.42660 2.83005 2.99209 3.16361 3.18917 3.36771 3.46569 3.99446 4.11498 4.15469 4.23593 4.34329 4.37393 4.44882 4.55822 4.61635 4.67306 4.73598 4.84657 4.86492 4.92064 4.96607 5.06037 5.10222 5.22892 5.28127 5.33130 5.39115 5.62275 5.82047 5.88094 6.04271 6.33113 6.41335 6.87051 7.44279 8.96232 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.049028 B = 0.003953 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.965167 B = 7081.850774 C = 7226.383239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.041 3.959 10 H -0.001 1.001 11 C -0.094 4.094 12 C 0.047 3.953 13 N -0.526 5.526 14 C 0.056 3.944 15 C -0.082 4.082 16 H 0.078 0.922 17 C -0.108 4.108 18 C -0.154 4.154 19 C 0.268 3.732 20 F -0.214 7.214 21 F -0.212 7.212 22 C -0.143 4.143 23 C 0.055 3.945 24 H 0.260 0.740 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -17.435 -6.570 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.017 0.983 11 C -0.133 4.133 12 C -0.081 4.081 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.101 4.101 16 H 0.096 0.904 17 C -0.146 4.146 18 C -0.192 4.192 19 C 0.232 3.768 20 F -0.195 7.195 21 F -0.193 7.193 22 C -0.182 4.182 23 C -0.073 4.073 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.999 -17.630 -6.159 19.098 hybrid contribution 0.173 1.468 -0.250 1.499 sum 4.172 -16.162 -6.409 17.880 Atomic orbital electron populations 1.70114 1.07361 1.27199 1.51176 1.25769 0.95620 1.02509 0.94717 0.85543 0.79189 0.79624 0.77533 1.18861 1.20694 1.20744 1.21492 0.93045 0.91737 1.50872 0.92548 1.19492 0.92876 0.92221 0.93226 0.98325 1.22096 0.99247 0.93495 0.98483 1.22816 0.97682 0.93985 0.93643 1.64723 1.19422 1.10900 1.29922 1.22314 0.94827 0.92130 0.97913 1.22050 0.98145 0.94503 0.95373 0.90354 1.22381 0.98574 0.91618 1.02045 1.23145 0.98898 1.01750 0.95389 1.22324 0.77872 0.87029 0.89571 1.92981 1.37309 1.97032 1.92198 1.92975 1.93474 1.62938 1.69922 1.23270 1.03761 0.91406 0.99717 1.23103 0.94844 0.90939 0.98399 0.93089 0.94844 0.94798 0.93589 0.91106 0.89723 0.93985 0.88747 0.89118 0.88049 0.87322 0.88047 0.90361 0.91276 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.83 12.44 21.45 0.27 -53.57 16 2 C 0.01 0.71 5.33 84.66 0.45 1.16 16 3 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.53 -29.27 8.43 25.60 0.22 -29.06 16 8 H 0.06 3.01 7.78 -2.91 -0.02 2.99 16 9 C 0.04 2.07 2.98 -10.34 -0.03 2.04 16 10 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 11 C -0.09 -4.48 5.51 31.48 0.17 -4.30 16 12 C 0.05 1.70 5.54 86.45 0.48 2.18 16 13 N -0.53 -18.15 5.22 -883.03 -4.61 -22.76 16 14 C 0.06 1.42 4.17 86.30 0.36 1.78 16 15 C -0.08 -1.71 2.87 -9.49 -0.03 -1.74 16 16 H 0.08 1.79 7.16 -2.39 -0.02 1.78 16 17 C -0.11 -1.54 6.28 31.67 0.20 -1.34 16 18 C -0.15 -2.29 6.50 31.32 0.20 -2.09 16 19 C 0.27 5.82 2.57 31.32 0.08 5.90 16 20 F -0.21 -5.55 17.04 44.97 0.77 -4.78 16 21 F -0.21 -5.13 17.04 44.97 0.77 -4.36 16 22 C -0.14 -3.26 5.77 31.68 0.18 -3.07 16 23 C 0.05 2.21 5.98 86.65 0.52 2.72 16 24 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.03 1.67 7.84 -2.39 -0.02 1.65 16 26 H 0.03 1.73 8.05 -2.39 -0.02 1.71 16 27 H 0.05 1.52 7.64 -2.39 -0.02 1.50 16 28 H 0.07 2.45 8.05 -2.38 -0.02 2.43 16 29 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 30 H 0.04 1.04 7.94 -2.39 -0.02 1.02 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.09 8.05 -2.38 -0.02 1.08 16 33 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 34 H 0.11 1.29 8.02 -2.39 -0.02 1.28 16 35 H 0.10 2.19 7.91 -2.39 -0.02 2.18 16 36 H 0.08 2.08 8.11 -2.39 -0.02 2.06 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.04 1.44 7.93 -2.39 -0.02 1.42 16 Total: -1.00 -61.77 307.76 3.05 -58.72 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.02 Total: 7.15 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 2.81 Total: -25.81 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -4.34 Total: -76.33 kcal Atomic # 9 Polarization: -10.68 SS G_CDS: 1.53 Total: -9.14 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -61.77 3.05 -58.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397835188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.118 kcal (2) G-P(sol) polarization free energy of solvation -61.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds