Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46957 * 300.00291 * 3 2 1 6 6 H 1.48508 * 109.46916 * 59.99898 * 3 2 1 7 7 C 1.37874 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99922 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.26984 * 302.08326 * 9 7 2 11 11 C 1.54596 * 110.39061 * 64.23407 * 9 7 2 12 12 C 1.54939 * 102.92162 * 140.91569 * 11 9 7 13 13 N 1.48525 * 103.22647 * 322.58270 * 12 11 9 14 14 C 1.46904 * 111.00124 * 159.71683 * 13 12 11 15 15 C 1.52995 * 109.47388 * 176.91834 * 14 13 12 16 16 H 1.09000 * 110.81874 * 51.79412 * 15 14 13 17 17 C 1.55244 * 110.90002 * 288.34643 * 15 14 13 18 18 C 1.54259 * 104.23333 * 203.79361 * 17 15 14 19 19 C 1.53879 * 106.59952 * 23.60917 * 18 17 15 20 20 F 1.39900 * 110.03501 * 240.71689 * 19 18 17 21 21 F 1.39902 * 110.03322 * 119.28701 * 19 18 17 22 22 C 1.54262 * 106.60010 * 0.02562 * 19 18 17 23 23 C 1.47902 * 105.82389 * 39.20934 * 13 12 11 24 24 H 0.97001 * 120.00335 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.72143 * 259.27605 * 11 9 7 26 26 H 1.08995 * 110.72510 * 22.37903 * 11 9 7 27 27 H 1.09003 * 110.66850 * 204.14734 * 12 11 9 28 28 H 1.09006 * 110.66088 * 81.01838 * 12 11 9 29 29 H 1.09007 * 109.46776 * 56.91623 * 14 13 12 30 30 H 1.08992 * 109.47140 * 296.92347 * 14 13 12 31 31 H 1.08997 * 110.46730 * 85.09695 * 17 15 14 32 32 H 1.09001 * 110.46985 * 322.48359 * 17 15 14 33 33 H 1.09003 * 110.03525 * 264.32699 * 18 17 15 34 34 H 1.08999 * 110.03197 * 142.89606 * 18 17 15 35 35 H 1.08995 * 110.48603 * 95.06056 * 22 19 18 36 36 H 1.08998 * 110.48970 * 217.58111 * 22 19 18 37 37 H 1.08996 * 109.91965 * 94.02042 * 23 13 12 38 38 H 1.09001 * 109.91908 * 215.11923 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5544 0.8666 11 6 0.4367 -2.6510 -1.3048 12 6 0.6011 -4.1540 -1.6429 13 7 2.0048 -4.4392 -1.2498 14 6 2.2110 -5.8786 -1.0410 15 6 3.6823 -6.1409 -0.7135 16 1 4.0178 -5.5001 0.1020 17 6 4.5729 -5.9446 -1.9698 18 6 5.8270 -6.7956 -1.6823 19 6 5.4056 -7.8694 -0.6639 20 9 6.1535 -7.7355 0.5109 21 9 5.5911 -9.1449 -1.2078 22 6 3.9100 -7.6339 -0.3684 23 6 2.2346 -3.6841 0.0011 24 1 -0.4851 0.8400 -0.0004 25 1 -0.6120 -2.4061 -1.1358 26 1 0.8545 -2.0271 -2.0948 27 1 0.4578 -4.3263 -2.7096 28 1 -0.0926 -4.7580 -1.0579 29 1 1.9384 -6.4198 -1.9472 30 1 1.5883 -6.2186 -0.2137 31 1 4.8424 -4.8949 -2.0857 32 1 4.0609 -6.3086 -2.8606 33 1 6.6142 -6.1702 -1.2613 34 1 6.1760 -7.2682 -2.6004 35 1 3.2914 -8.2707 -1.0007 36 1 3.6953 -7.8188 0.6841 37 1 2.0436 -4.3248 0.8620 38 1 3.2610 -3.3186 0.0309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397835193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = -133.410144 kcal Electronic energy + Delta-G solvation = -19913.258466 eV Core-core repulsion = 16617.452261 eV Total energy + Delta-G solvation = -3295.806204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.90777 -47.99497 -40.04686 -38.11650 -35.02881 -32.67882 -30.39226 -29.84496 -28.66803 -26.62771 -24.75571 -22.07055 -21.87507 -21.63409 -20.48898 -18.59469 -18.51712 -17.63944 -17.30176 -16.56339 -16.26252 -16.06854 -15.36638 -15.26616 -15.09406 -14.57707 -14.37539 -14.32500 -13.86368 -13.61259 -13.45269 -13.07686 -12.99565 -12.73734 -12.67940 -12.54228 -12.28844 -12.10761 -11.99222 -11.67542 -11.55065 -11.47625 -11.40361 -11.15564 -10.79855 -10.49080 -9.18421 -8.11739 -6.19812 1.40901 1.43202 1.54359 2.44804 2.76931 2.94497 3.16065 3.20772 3.36909 3.47256 3.97712 4.10454 4.16352 4.28722 4.37897 4.41310 4.44033 4.48967 4.56214 4.65129 4.70076 4.80655 4.84592 4.93845 4.96886 5.06870 5.13239 5.27939 5.31864 5.39164 5.41700 5.58650 5.76433 5.87872 6.19953 6.33939 6.42116 6.89285 7.47098 8.98106 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.032023 B = 0.004466 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.156187 B = 6267.894565 C = 6747.881656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.027 3.973 10 H -0.003 1.003 11 C -0.085 4.085 12 C 0.042 3.958 13 N -0.517 5.517 14 C 0.057 3.943 15 C -0.085 4.085 16 H 0.070 0.930 17 C -0.100 4.100 18 C -0.160 4.160 19 C 0.274 3.726 20 F -0.213 7.213 21 F -0.208 7.208 22 C -0.149 4.149 23 C 0.060 3.940 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 -15.559 -4.091 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.071 0.929 9 C 0.008 3.992 10 H 0.015 0.985 11 C -0.124 4.124 12 C -0.086 4.086 13 N -0.241 5.241 14 C -0.071 4.071 15 C -0.104 4.104 16 H 0.089 0.911 17 C -0.138 4.138 18 C -0.197 4.197 19 C 0.238 3.762 20 F -0.194 7.194 21 F -0.189 7.189 22 C -0.187 4.187 23 C -0.068 4.068 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.713 -15.331 -4.478 17.737 hybrid contribution -0.274 0.803 1.062 1.359 sum 7.439 -14.529 -3.416 16.676 Atomic orbital electron populations 1.70089 1.07222 1.27090 1.51722 1.25730 0.95627 1.02343 0.94980 0.85591 0.79195 0.79912 0.77488 1.19088 1.20710 1.20794 1.21548 0.92790 0.91649 1.50003 0.92852 1.19509 0.93120 0.93056 0.93468 0.98515 1.22159 0.98323 0.93685 0.98238 1.23216 0.88742 0.95930 1.00666 1.64700 1.22705 1.07352 1.29356 1.22286 0.95037 0.88707 1.01035 1.22070 0.95395 0.94178 0.98709 0.91124 1.22292 0.93483 1.00188 0.97791 1.23199 1.00739 0.96508 0.99295 1.22114 0.92651 0.80501 0.80925 1.92988 1.79406 1.95855 1.51144 1.92985 1.96444 1.43524 1.85969 1.23344 0.91872 0.98495 1.05038 1.22788 0.99852 0.94416 0.89751 0.93162 0.94470 0.94400 0.89432 0.94057 0.88866 0.94760 0.90845 0.89494 0.88868 0.87455 0.86669 0.88895 0.95350 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 12.63 21.45 0.27 -53.37 16 2 C 0.01 0.65 5.34 84.65 0.45 1.10 16 3 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -28.74 8.38 25.60 0.21 -28.53 16 8 H 0.05 2.91 7.35 -2.91 -0.02 2.89 16 9 C 0.03 1.37 2.87 -10.66 -0.03 1.34 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.09 -3.95 5.75 31.80 0.18 -3.77 16 12 C 0.04 1.47 6.56 86.65 0.57 2.04 16 13 N -0.52 -17.53 5.22 -883.02 -4.61 -22.14 16 14 C 0.06 1.44 4.18 86.30 0.36 1.80 16 15 C -0.08 -1.91 2.88 -9.37 -0.03 -1.94 16 16 H 0.07 1.87 7.17 -2.39 -0.02 1.86 16 17 C -0.10 -2.04 6.22 31.79 0.20 -1.85 16 18 C -0.16 -2.93 6.50 31.32 0.20 -2.73 16 19 C 0.27 5.77 2.57 31.32 0.08 5.85 16 20 F -0.21 -5.35 17.04 44.97 0.77 -4.58 16 21 F -0.21 -4.67 17.04 44.97 0.77 -3.91 16 22 C -0.15 -2.81 5.84 31.68 0.18 -2.63 16 23 C 0.06 2.41 5.20 86.45 0.45 2.85 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.04 1.83 8.12 -2.39 -0.02 1.81 16 26 H 0.04 1.89 7.86 -2.39 -0.02 1.88 16 27 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.04 1.36 8.02 -2.38 -0.02 1.34 16 29 H 0.09 1.95 8.00 -2.38 -0.02 1.93 16 30 H 0.03 0.86 7.94 -2.39 -0.02 0.84 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.58 7.95 -2.39 -0.02 1.56 16 33 H 0.09 1.71 8.02 -2.39 -0.02 1.69 16 34 H 0.11 1.63 8.02 -2.39 -0.02 1.61 16 35 H 0.11 1.78 8.02 -2.39 -0.02 1.76 16 36 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 37 H 0.03 1.07 7.64 -2.39 -0.02 1.05 16 38 H 0.06 2.58 7.31 -2.39 -0.02 2.56 16 Total: -1.00 -60.64 307.35 3.08 -57.56 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.03 Total: 7.05 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 2.84 Total: -26.45 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -4.34 Total: -75.51 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 1.53 Total: -8.49 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.64 3.08 -57.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397835193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.847 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds