Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47060 * 269.99837 * 3 2 1 5 5 H 1.48496 * 109.47396 * 29.99914 * 3 2 1 6 6 H 1.48504 * 109.47412 * 150.00104 * 3 2 1 7 7 C 1.37879 * 120.00573 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00902 * 173.16346 * 7 2 1 9 9 C 1.50708 * 119.99370 * 353.15805 * 7 2 1 10 10 C 1.53001 * 115.54662 * 84.91077 * 9 7 2 11 11 N 1.46899 * 109.47287 * 39.76492 * 10 9 7 12 12 C 1.46900 * 111.00065 * 174.77612 * 11 10 9 13 13 H 1.09007 * 109.46831 * 324.99850 * 12 11 10 14 14 C 1.53002 * 109.47141 * 205.00128 * 12 11 10 15 15 C 1.52997 * 109.47063 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47273 * 59.99777 * 15 14 12 17 17 C 1.53002 * 109.47259 * 300.00103 * 16 15 14 18 18 C 1.52997 * 109.47063 * 59.99768 * 17 16 15 19 19 F 1.39905 * 109.47018 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.47126 * 60.00365 * 18 17 16 21 21 C 1.53003 * 117.51644 * 230.60679 * 9 7 2 22 22 C 1.53000 * 117.50248 * 299.23649 * 9 7 2 23 23 H 0.96995 * 120.00235 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46930 * 159.76410 * 10 9 7 25 25 H 1.08998 * 109.46919 * 279.75923 * 10 9 7 26 26 H 1.00899 * 111.00136 * 50.81989 * 11 10 9 27 27 H 1.08999 * 109.47237 * 299.99840 * 14 12 11 28 28 H 1.08999 * 109.47121 * 59.99422 * 14 12 11 29 29 H 1.08998 * 109.47265 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.47078 * 300.00078 * 15 14 12 31 31 H 1.09007 * 109.47122 * 60.00075 * 16 15 14 32 32 H 1.09001 * 109.47424 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47121 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47237 * 299.99787 * 17 16 15 35 35 H 1.08999 * 117.49613 * 214.97489 * 21 9 7 36 36 H 1.08994 * 117.50135 * 359.97438 * 21 9 7 37 37 H 1.08999 * 117.49411 * 359.97438 * 22 9 7 38 38 H 1.08996 * 117.49820 * 144.99465 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0788 -1.1973 -0.1119 9 6 1.2591 -2.4946 0.1544 10 6 0.6852 -3.0838 -1.1357 11 7 1.6476 -2.8976 -2.2297 12 6 1.1850 -3.5601 -3.4565 13 1 0.6569 -4.4777 -3.1968 14 6 2.3884 -3.8967 -4.3393 15 6 1.9066 -4.5873 -5.6167 16 6 0.9621 -3.6535 -6.3762 17 6 -0.2413 -3.3169 -5.4934 18 6 0.2405 -2.6263 -4.2160 19 9 -0.8599 -2.3191 -3.4085 20 9 0.9179 -1.4486 -4.5497 21 6 1.7607 -3.4747 1.2168 22 6 0.4598 -2.7017 1.4424 23 1 -0.4850 0.8400 -0.0004 24 1 0.4954 -4.1481 -0.9960 25 1 -0.2481 -2.5777 -1.3826 26 1 2.5641 -3.2261 -1.9649 27 1 2.9165 -2.9792 -4.5990 28 1 3.0610 -4.5623 -3.7984 29 1 2.7639 -4.8275 -6.2454 30 1 1.3787 -5.5048 -5.3567 31 1 1.4899 -2.7358 -6.6362 32 1 0.6192 -4.1453 -7.2865 33 1 -0.9144 -2.6520 -6.0346 34 1 -0.7691 -4.2344 -5.2333 35 1 1.6818 -4.5393 0.9966 36 1 2.6304 -3.1792 1.8036 37 1 0.4735 -1.8974 2.1780 38 1 -0.4750 -3.2577 1.3708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398284120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -88.264193 kcal Electronic energy + Delta-G solvation = -20913.150389 eV Core-core repulsion = 17619.301860 eV Total energy + Delta-G solvation = -3293.848529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.21706 -46.21613 -37.98503 -36.61680 -33.83548 -31.70520 -30.22682 -28.62777 -25.38773 -24.08331 -22.75203 -21.59539 -20.98587 -19.85730 -18.87064 -16.79042 -16.17193 -16.16506 -15.80759 -15.07041 -14.47094 -14.15396 -13.86210 -13.66553 -13.27389 -13.08392 -12.96139 -12.77957 -12.52476 -12.24378 -11.97439 -11.71698 -11.37190 -11.27884 -11.12268 -10.81262 -10.71121 -10.61526 -10.56095 -10.36725 -10.04626 -9.96633 -9.29194 -8.73654 -8.20813 -7.95613 -7.49964 -5.81229 -3.82780 3.44568 3.50898 3.52426 4.11837 4.48053 4.53381 4.56709 4.61960 4.89124 5.09134 5.21233 5.24154 5.32385 5.41388 5.48061 5.51059 5.68754 5.74297 5.92205 5.95836 6.03216 6.10034 6.13514 6.22909 6.32150 6.41438 6.56396 6.67175 6.78422 7.04199 7.18934 7.52509 7.55759 8.00695 8.08888 8.23135 8.63589 9.12514 9.80213 11.28967 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.007549 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.834337 B = 3708.049368 C = 4180.546594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.076 3.924 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.472 4.472 8 H 0.056 0.944 9 C 0.048 3.952 10 C 0.100 3.900 11 N -0.647 5.647 12 C 0.049 3.951 13 H 0.056 0.944 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.161 4.161 18 C 0.304 3.696 19 F -0.194 7.194 20 F -0.191 7.191 21 C -0.220 4.220 22 C -0.157 4.157 23 H 0.256 0.744 24 H -0.008 1.008 25 H 0.085 0.915 26 H 0.341 0.659 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -9.732 -11.117 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.127 4.127 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.047 3.953 10 C -0.028 4.028 11 N -0.278 5.278 12 C -0.063 4.063 13 H 0.074 0.926 14 C -0.159 4.159 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.200 4.200 18 C 0.267 3.733 19 F -0.175 7.175 20 F -0.172 7.172 21 C -0.257 4.257 22 C -0.195 4.195 23 H 0.065 0.935 24 H 0.010 0.990 25 H 0.103 0.897 26 H 0.161 0.839 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.811 -8.943 -11.258 14.400 hybrid contribution 0.352 0.178 0.364 0.536 sum 1.163 -8.765 -10.894 14.031 Atomic orbital electron populations 1.70001 1.05776 1.25952 1.49602 1.24848 0.94636 0.98498 0.94696 0.86720 0.79788 0.84139 0.78011 1.20694 1.21600 1.20208 1.20101 0.92441 0.88323 1.50119 0.92598 1.18894 0.97194 0.93831 0.85380 1.21780 0.96163 0.93943 0.90926 1.60220 1.05688 1.59358 1.02490 1.22378 0.96020 0.94311 0.93640 0.92588 1.21700 0.96891 1.01816 0.95485 1.21576 0.99300 0.98391 0.96515 1.21500 0.95510 1.00625 0.97882 1.22566 0.99784 1.02179 0.95472 1.21006 0.80968 0.82531 0.88797 1.93002 1.55280 1.94082 1.75144 1.92974 1.80628 1.50790 1.92774 1.23096 0.98555 0.95339 1.08711 1.22474 0.92007 1.01098 1.03924 0.93459 0.98969 0.89682 0.83941 0.89969 0.90983 0.91230 0.91803 0.90810 0.91012 0.89812 0.89383 0.92230 0.90563 0.90060 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 12.95 55.43 0.72 -25.26 16 2 C 0.08 2.17 5.39 -17.82 -0.10 2.07 16 3 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.47 -13.07 8.16 -34.44 -0.28 -13.35 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.05 1.19 1.63 -155.65 -0.25 0.93 16 10 C 0.10 2.31 5.46 -3.82 -0.02 2.29 16 11 N -0.65 -13.38 5.59 -106.72 -0.60 -13.98 16 12 C 0.05 0.80 2.19 -67.71 -0.15 0.66 16 13 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 14 C -0.12 -1.57 5.07 -26.73 -0.14 -1.71 16 15 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 16 C -0.12 -1.23 5.80 -26.73 -0.16 -1.38 16 17 C -0.16 -2.05 5.45 -26.73 -0.15 -2.19 16 18 C 0.30 5.40 1.77 -26.73 -0.05 5.35 16 19 F -0.19 -4.16 14.85 2.25 0.03 -4.13 16 20 F -0.19 -3.90 15.95 2.25 0.04 -3.86 16 21 C -0.22 -4.85 9.88 -26.73 -0.26 -5.11 16 22 C -0.16 -3.79 9.49 -26.73 -0.25 -4.05 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H -0.01 -0.16 7.73 -51.93 -0.40 -0.56 16 25 H 0.09 2.23 6.20 -51.93 -0.32 1.90 16 26 H 0.34 6.65 8.28 -39.29 -0.33 6.32 16 27 H 0.08 1.17 7.80 -51.93 -0.41 0.77 16 28 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -30.86 309.41 -8.16 -39.02 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.03 Total: 4.13 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.96 Total: -17.85 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.12 Total: -39.24 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.07 Total: -7.99 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.86 -8.16 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398284120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.244 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds