Wall clock time and date at job start Mon Mar 30 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47060 * 269.99837 * 3 2 1 5 5 H 1.48496 * 109.47396 * 29.99914 * 3 2 1 6 6 H 1.48504 * 109.47412 * 150.00104 * 3 2 1 7 7 C 1.37879 * 120.00573 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00902 * 173.16346 * 7 2 1 9 9 C 1.50708 * 119.99370 * 353.15805 * 7 2 1 10 10 C 1.53001 * 115.54662 * 84.91077 * 9 7 2 11 11 N 1.46899 * 109.47287 * 39.76492 * 10 9 7 12 12 C 1.46900 * 111.00065 * 174.77612 * 11 10 9 13 13 H 1.09007 * 109.46831 * 324.99850 * 12 11 10 14 14 C 1.53002 * 109.47141 * 205.00128 * 12 11 10 15 15 C 1.52997 * 109.47063 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47273 * 59.99777 * 15 14 12 17 17 C 1.53002 * 109.47259 * 300.00103 * 16 15 14 18 18 C 1.52997 * 109.47063 * 59.99768 * 17 16 15 19 19 F 1.39905 * 109.47018 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.47126 * 60.00365 * 18 17 16 21 21 C 1.53003 * 117.51644 * 230.60679 * 9 7 2 22 22 C 1.53000 * 117.50248 * 299.23649 * 9 7 2 23 23 H 0.96995 * 120.00235 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46930 * 159.76410 * 10 9 7 25 25 H 1.08998 * 109.46919 * 279.75923 * 10 9 7 26 26 H 1.00899 * 111.00136 * 50.81989 * 11 10 9 27 27 H 1.08999 * 109.47237 * 299.99840 * 14 12 11 28 28 H 1.08999 * 109.47121 * 59.99422 * 14 12 11 29 29 H 1.08998 * 109.47265 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.47078 * 300.00078 * 15 14 12 31 31 H 1.09007 * 109.47122 * 60.00075 * 16 15 14 32 32 H 1.09001 * 109.47424 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47121 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47237 * 299.99787 * 17 16 15 35 35 H 1.08999 * 117.49613 * 214.97489 * 21 9 7 36 36 H 1.08994 * 117.50135 * 359.97438 * 21 9 7 37 37 H 1.08999 * 117.49411 * 359.97438 * 22 9 7 38 38 H 1.08996 * 117.49820 * 144.99465 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0788 -1.1973 -0.1119 9 6 1.2591 -2.4946 0.1544 10 6 0.6852 -3.0838 -1.1357 11 7 1.6476 -2.8976 -2.2297 12 6 1.1850 -3.5601 -3.4565 13 1 0.6569 -4.4777 -3.1968 14 6 2.3884 -3.8967 -4.3393 15 6 1.9066 -4.5873 -5.6167 16 6 0.9621 -3.6535 -6.3762 17 6 -0.2413 -3.3169 -5.4934 18 6 0.2405 -2.6263 -4.2160 19 9 -0.8599 -2.3191 -3.4085 20 9 0.9179 -1.4486 -4.5497 21 6 1.7607 -3.4747 1.2168 22 6 0.4598 -2.7017 1.4424 23 1 -0.4850 0.8400 -0.0004 24 1 0.4954 -4.1481 -0.9960 25 1 -0.2481 -2.5777 -1.3826 26 1 2.5641 -3.2261 -1.9649 27 1 2.9165 -2.9792 -4.5990 28 1 3.0610 -4.5623 -3.7984 29 1 2.7639 -4.8275 -6.2454 30 1 1.3787 -5.5048 -5.3567 31 1 1.4899 -2.7358 -6.6362 32 1 0.6192 -4.1453 -7.2865 33 1 -0.9144 -2.6520 -6.0346 34 1 -0.7691 -4.2344 -5.2333 35 1 1.6818 -4.5393 0.9966 36 1 2.6304 -3.1792 1.8036 37 1 0.4735 -1.8974 2.1780 38 1 -0.4750 -3.2577 1.3708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398284120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:10 Heat of formation + Delta-G solvation = -106.713330 kcal Electronic energy + Delta-G solvation = -20913.950404 eV Core-core repulsion = 17619.301860 eV Total energy + Delta-G solvation = -3294.648544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.70857 -47.74893 -39.30184 -38.24955 -35.25705 -33.85688 -31.28278 -29.93167 -27.47243 -25.74065 -23.85642 -22.97743 -22.64685 -21.20265 -20.62976 -18.16663 -17.97604 -17.50900 -17.38247 -16.64081 -16.28360 -15.81539 -15.03221 -14.92495 -14.83756 -14.71012 -14.50949 -14.06960 -13.97424 -13.83430 -13.40086 -13.18939 -13.00779 -12.87112 -12.73232 -12.37560 -12.32733 -12.27613 -11.94782 -11.69592 -11.54952 -11.32749 -10.97757 -10.73274 -10.31768 -9.87597 -9.07898 -7.98910 -6.03992 1.40695 1.43625 1.50483 2.49425 2.91919 3.19253 3.32855 3.33248 3.46185 3.53148 3.83672 4.09618 4.13063 4.20421 4.30669 4.38334 4.44393 4.52503 4.68429 4.72573 4.74180 4.79212 4.97060 4.99220 5.05141 5.09282 5.17200 5.20114 5.23765 5.32000 5.45653 5.63251 5.69885 5.89348 6.31938 6.52988 6.71772 6.97904 7.60798 9.10305 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.007549 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.834337 B = 3708.049368 C = 4180.546594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.473 4.473 8 H 0.050 0.950 9 C 0.017 3.983 10 C 0.116 3.884 11 N -0.669 5.669 12 C 0.049 3.951 13 H 0.070 0.930 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.153 4.153 18 C 0.281 3.719 19 F -0.223 7.223 20 F -0.214 7.214 21 C -0.186 4.186 22 C -0.168 4.168 23 H 0.251 0.749 24 H 0.012 0.988 25 H 0.046 0.954 26 H 0.346 0.654 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -11.832 -12.402 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.013 4.013 11 N -0.300 5.300 12 C -0.063 4.063 13 H 0.088 0.912 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.191 4.191 18 C 0.244 3.756 19 F -0.204 7.204 20 F -0.195 7.195 21 C -0.223 4.223 22 C -0.206 4.206 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.065 0.935 26 H 0.166 0.834 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.938 -11.052 -12.542 16.828 hybrid contribution 0.025 0.814 0.774 1.123 sum 1.963 -10.238 -11.768 15.721 Atomic orbital electron populations 1.70128 1.06957 1.26106 1.51387 1.25515 0.95326 1.01437 0.95090 0.85865 0.79111 0.80892 0.77521 1.21336 1.21436 1.19049 1.20372 0.92308 0.89764 1.48660 0.93201 1.19041 0.98367 0.94217 0.86723 1.21416 0.94932 0.94208 0.90711 1.60047 1.05581 1.61194 1.03220 1.22540 0.97444 0.93956 0.92346 0.91242 1.21710 0.95368 1.01690 0.96572 1.21588 1.00218 0.98334 0.94986 1.21551 0.94462 1.00587 0.98620 1.22595 1.01035 1.02350 0.93121 1.21875 0.80577 0.82125 0.91035 1.92944 1.56741 1.94362 1.76392 1.92917 1.81147 1.52451 1.92987 1.23073 0.97031 0.96351 1.05845 1.22391 0.93647 1.01383 1.03187 0.94013 0.97041 0.93535 0.83355 0.91827 0.89389 0.88850 0.90060 0.92118 0.87731 0.89602 0.87378 0.89111 0.90329 0.92476 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.40 12.95 21.45 0.28 -55.12 16 2 C 0.03 1.49 5.39 84.66 0.46 1.94 16 3 Si 0.94 46.61 29.54 68.60 2.03 48.63 16 4 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.47 -26.40 8.16 25.60 0.21 -26.19 16 8 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 9 C 0.02 0.85 1.63 -52.92 -0.09 0.76 16 10 C 0.12 5.35 5.46 86.30 0.47 5.82 16 11 N -0.67 -27.49 5.59 -491.56 -2.75 -30.23 16 12 C 0.05 1.55 2.19 44.92 0.10 1.65 16 13 H 0.07 2.04 7.72 -2.38 -0.02 2.02 16 14 C -0.12 -2.73 5.07 30.59 0.16 -2.58 16 15 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 16 C -0.11 -2.03 5.80 30.59 0.18 -1.85 16 17 C -0.15 -3.58 5.45 30.59 0.17 -3.42 16 18 C 0.28 9.92 1.77 30.59 0.05 9.97 16 19 F -0.22 -9.87 14.85 44.97 0.67 -9.20 16 20 F -0.21 -8.95 15.95 44.97 0.72 -8.23 16 21 C -0.19 -7.85 9.88 30.60 0.30 -7.54 16 22 C -0.17 -8.11 9.49 30.59 0.29 -7.82 16 23 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 24 H 0.01 0.48 7.73 -2.38 -0.02 0.46 16 25 H 0.05 2.50 6.20 -2.39 -0.01 2.49 16 26 H 0.35 13.21 8.28 -89.69 -0.74 12.47 16 27 H 0.06 1.74 7.80 -2.39 -0.02 1.73 16 28 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.25 7.80 -2.38 -0.02 1.23 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 3.27 8.08 -2.39 -0.02 3.26 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -68.68 309.41 3.72 -64.96 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.30 Total: 20.10 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 2.48 Total: -30.91 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.47 Total: -85.35 kcal Atomic # 9 Polarization: -18.82 SS G_CDS: 1.38 Total: -17.43 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -68.68 3.72 -64.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398284120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.753 kcal (2) G-P(sol) polarization free energy of solvation -68.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds