Wall clock time and date at job start Mon Mar 30 2020 07:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 112.85081 * 2 1 4 4 C 1.53781 * 113.61438 * 228.80020 * 2 1 3 5 5 C 1.53954 * 87.02169 * 220.05155 * 4 2 1 6 6 N 1.46897 * 113.74521 * 139.94872 * 5 4 2 7 7 C 1.46896 * 111.00354 * 107.40165 * 6 5 4 8 8 C 1.50707 * 109.46915 * 180.02562 * 7 6 5 9 9 C 1.38634 * 119.74492 * 269.72671 * 8 7 6 10 10 C 1.37618 * 120.24370 * 179.72763 * 9 8 7 11 11 C 1.40719 * 119.74283 * 0.56316 * 10 9 8 12 12 C 1.41399 * 120.24213 * 179.68246 * 11 10 9 13 13 H 1.08002 * 120.00070 * 204.41168 * 12 11 10 14 14 C 1.39949 * 120.00147 * 24.41506 * 12 11 10 15 15 N 1.30823 * 119.99848 * 17.84031 * 14 12 11 16 16 Si 1.86799 * 120.00327 * 197.84624 * 14 12 11 17 17 H 1.48496 * 109.47194 * 89.99295 * 16 14 12 18 18 H 1.48502 * 109.47091 * 209.99920 * 16 14 12 19 19 H 1.48503 * 109.46894 * 329.99747 * 16 14 12 20 20 C 1.40714 * 119.51655 * 359.71262 * 11 10 9 21 21 C 1.37623 * 119.73907 * 359.97438 * 20 11 10 22 22 C 1.53776 * 87.11064 * 25.36274 * 5 4 2 23 23 H 1.09007 * 109.46881 * 50.33324 * 1 2 3 24 24 H 1.09004 * 109.47479 * 170.33244 * 1 2 3 25 25 H 1.08994 * 109.47246 * 290.33510 * 1 2 3 26 26 H 1.09001 * 109.46882 * 69.66828 * 3 2 1 27 27 H 1.09003 * 109.46722 * 189.66338 * 3 2 1 28 28 H 1.08996 * 109.47207 * 309.66381 * 3 2 1 29 29 H 1.08998 * 113.61640 * 334.57342 * 4 2 1 30 30 H 1.09004 * 113.61176 * 105.47223 * 4 2 1 31 31 H 1.09004 * 113.53957 * 270.81283 * 5 4 2 32 32 H 1.00902 * 110.99781 * 343.44834 * 6 5 4 33 33 H 1.09002 * 109.47123 * 299.99878 * 7 6 5 34 34 H 1.09003 * 109.47172 * 60.00351 * 7 6 5 35 35 H 1.07997 * 119.88085 * 359.97438 * 9 8 7 36 36 H 1.08001 * 120.13089 * 180.28086 * 10 9 8 37 37 H 0.97002 * 119.99957 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.13045 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.87273 * 180.02562 * 21 20 11 40 40 H 1.09003 * 113.61867 * 220.08616 * 22 5 4 41 41 H 1.09004 * 113.61577 * 89.18610 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 -1.0602 5 6 3.1922 -1.3137 0.0013 6 7 3.5334 -2.7425 0.0040 7 6 4.8764 -2.9642 -0.5483 8 6 5.1900 -4.4382 -0.5299 9 6 5.8101 -4.9956 0.5777 10 6 6.0963 -6.3414 0.6077 11 6 5.7676 -7.1498 -0.4962 12 6 6.0629 -8.5325 -0.4793 13 1 6.1880 -9.0694 -1.4080 14 6 6.1928 -9.2055 0.7409 15 7 5.7119 -8.6741 1.8354 16 14 7.0531 -10.8623 0.8069 17 1 8.5038 -10.6575 1.0490 18 1 6.4773 -11.6755 1.9080 19 1 6.8620 -11.5710 -0.4841 20 6 5.1436 -6.5720 -1.6173 21 6 4.8611 -5.2251 -1.6227 22 6 2.1460 -0.9281 1.0602 23 1 -0.3633 0.6560 -0.7911 24 1 -0.3634 -1.0131 -0.1726 25 1 -0.3633 0.3571 0.9636 26 1 1.9361 1.8834 0.9637 27 1 3.1988 1.3512 -0.1725 28 1 1.6608 1.9995 -0.7911 29 1 1.4945 -1.7523 -1.3506 30 1 2.5650 -0.3970 -1.9149 31 1 4.0711 -0.6688 0.0008 32 1 2.8426 -3.2801 -0.4981 33 1 4.9122 -2.5983 -1.5745 34 1 5.6100 -2.4287 0.0543 35 1 6.0661 -4.3723 1.4216 36 1 6.5753 -6.7746 1.4733 37 1 5.8024 -9.1404 2.6812 38 1 4.8874 -7.1832 -2.4701 39 1 4.3818 -4.7795 -2.4818 40 1 2.5649 -0.3971 1.9150 41 1 1.4943 -1.7523 1.3507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398956464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:30 Heat of formation + Delta-G solvation = 18.373117 kcal Electronic energy + Delta-G solvation = -18553.603809 eV Core-core repulsion = 15818.608950 eV Total energy + Delta-G solvation = -2734.994858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.76921 -37.62044 -34.80851 -33.33494 -30.64376 -29.27938 -28.81264 -27.56456 -25.96631 -25.65359 -23.10422 -21.19241 -20.87151 -19.85572 -18.26479 -17.26178 -15.53767 -15.42736 -15.26804 -14.47966 -14.36217 -13.98219 -13.72641 -13.40330 -12.97462 -12.82028 -12.66872 -12.52455 -12.02576 -11.89904 -11.82248 -11.63882 -11.52475 -11.23442 -11.03185 -10.91680 -10.81242 -10.49976 -10.35754 -10.10361 -10.01341 -9.51936 -9.32151 -9.10024 -7.90482 -7.40431 -7.26533 -6.72790 -4.32002 2.77568 3.08411 3.11490 3.12191 3.20929 3.95115 4.41793 4.50486 4.58572 4.71282 4.87086 5.09977 5.19934 5.41586 5.49877 5.58557 5.67423 5.75137 5.75722 5.82942 5.87487 5.89341 5.91453 5.95862 6.05880 6.14890 6.28871 6.39143 6.40502 6.47625 6.49593 6.99491 7.10429 7.33658 7.40036 7.53771 7.65260 7.80177 7.94631 8.09259 8.19310 8.33823 8.68352 8.92919 9.01684 10.21505 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045663 B = 0.003403 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.044726 B = 8226.897740 C = 8360.881292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.161 4.161 5 C 0.068 3.932 6 N -0.673 5.673 7 C 0.125 3.875 8 C -0.213 4.213 9 C -0.079 4.079 10 C -0.167 4.167 11 C 0.112 3.888 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.228 4.228 21 C -0.086 4.086 22 C -0.120 4.120 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.341 0.659 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 13.385 -1.798 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.184 4.184 4 C -0.200 4.200 5 C -0.043 4.043 6 N -0.303 5.303 7 C -0.003 4.003 8 C -0.215 4.215 9 C -0.098 4.098 10 C -0.187 4.187 11 C 0.109 3.891 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.417 5.417 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.247 4.247 21 C -0.105 4.105 22 C -0.158 4.158 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.488 13.322 -0.889 14.435 hybrid contribution 0.090 -0.659 -0.825 1.060 sum -5.398 12.663 -1.714 13.872 Atomic orbital electron populations 1.21700 0.94357 1.01672 1.01302 1.21688 0.95058 0.94609 0.97909 1.21578 1.00547 0.94696 1.01548 1.23852 0.99335 0.99533 0.97272 1.23005 0.95756 0.90353 0.95220 1.60570 1.04480 1.05501 1.59726 1.20585 0.89426 0.94696 0.95591 1.18932 1.12149 0.93385 0.97045 1.20503 0.98674 0.95052 0.95601 1.21317 1.04881 0.91896 1.00582 1.17622 0.87564 0.93084 0.90781 1.19601 1.42722 0.93977 0.93085 0.90535 1.25909 0.93234 0.99858 0.95199 1.69839 1.33065 1.38610 1.00138 0.86331 0.80234 0.81350 0.78898 1.19301 1.20342 1.18672 1.20926 1.08834 0.94331 1.00642 1.20351 0.99846 0.94104 0.96167 1.23182 0.97851 0.98299 0.96470 0.93015 0.92531 0.92737 0.92473 0.92500 0.92721 0.90037 0.92010 0.89266 0.83944 0.96461 0.92140 0.89500 0.86531 0.90904 0.89210 0.89978 0.91792 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.18 37.15 0.34 -0.89 16 2 C -0.09 -0.94 1.39 -153.70 -0.21 -1.16 16 3 C -0.13 -1.14 9.07 37.16 0.34 -0.80 16 4 C -0.16 -1.84 6.84 -25.83 -0.18 -2.01 16 5 C 0.07 0.89 3.83 -66.81 -0.26 0.63 16 6 N -0.67 -11.05 6.61 -107.04 -0.71 -11.76 16 7 C 0.12 2.23 5.65 -4.97 -0.03 2.20 16 8 C -0.21 -4.68 5.41 -104.33 -0.56 -5.24 16 9 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 10 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 11 C 0.11 3.03 5.58 -106.82 -0.60 2.43 16 12 C -0.46 -12.49 9.05 -37.74 -0.34 -12.83 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.79 -20.77 10.95 55.55 0.61 -20.16 16 16 Si 0.91 18.86 29.60 -169.99 -5.03 13.82 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 21 C -0.09 -1.93 9.67 -39.66 -0.38 -2.31 16 22 C -0.12 -1.44 7.03 -25.92 -0.18 -1.62 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.54 7.98 -51.93 -0.41 0.13 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.52 7.34 -51.93 -0.38 0.14 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 30 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.09 1.16 7.37 -51.93 -0.38 0.78 16 32 H 0.34 5.66 8.20 -39.29 -0.32 5.33 16 33 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 37 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.06 0.75 8.10 -51.93 -0.42 0.32 16 41 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -27.04 332.57 -10.20 -37.24 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.83 Total: 8.68 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -3.26 Total: -32.84 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: -0.10 Total: -31.92 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.04 -10.20 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398956464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.618 kcal (2) G-P(sol) polarization free energy of solvation -27.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds