Wall clock time and date at job start Mon Mar 30 2020 07:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 112.85081 * 2 1 4 4 C 1.53781 * 113.61438 * 228.80020 * 2 1 3 5 5 C 1.53954 * 87.02169 * 220.05155 * 4 2 1 6 6 N 1.46897 * 113.74521 * 139.94872 * 5 4 2 7 7 C 1.46896 * 111.00354 * 107.40165 * 6 5 4 8 8 C 1.50707 * 109.46915 * 180.02562 * 7 6 5 9 9 C 1.38634 * 119.74492 * 269.72671 * 8 7 6 10 10 C 1.37618 * 120.24370 * 179.72763 * 9 8 7 11 11 C 1.40719 * 119.74283 * 0.56316 * 10 9 8 12 12 C 1.41399 * 120.24213 * 179.68246 * 11 10 9 13 13 H 1.08002 * 120.00070 * 204.41168 * 12 11 10 14 14 C 1.39949 * 120.00147 * 24.41506 * 12 11 10 15 15 N 1.30823 * 119.99848 * 17.84031 * 14 12 11 16 16 Si 1.86799 * 120.00327 * 197.84624 * 14 12 11 17 17 H 1.48496 * 109.47194 * 89.99295 * 16 14 12 18 18 H 1.48502 * 109.47091 * 209.99920 * 16 14 12 19 19 H 1.48503 * 109.46894 * 329.99747 * 16 14 12 20 20 C 1.40714 * 119.51655 * 359.71262 * 11 10 9 21 21 C 1.37623 * 119.73907 * 359.97438 * 20 11 10 22 22 C 1.53776 * 87.11064 * 25.36274 * 5 4 2 23 23 H 1.09007 * 109.46881 * 50.33324 * 1 2 3 24 24 H 1.09004 * 109.47479 * 170.33244 * 1 2 3 25 25 H 1.08994 * 109.47246 * 290.33510 * 1 2 3 26 26 H 1.09001 * 109.46882 * 69.66828 * 3 2 1 27 27 H 1.09003 * 109.46722 * 189.66338 * 3 2 1 28 28 H 1.08996 * 109.47207 * 309.66381 * 3 2 1 29 29 H 1.08998 * 113.61640 * 334.57342 * 4 2 1 30 30 H 1.09004 * 113.61176 * 105.47223 * 4 2 1 31 31 H 1.09004 * 113.53957 * 270.81283 * 5 4 2 32 32 H 1.00902 * 110.99781 * 343.44834 * 6 5 4 33 33 H 1.09002 * 109.47123 * 299.99878 * 7 6 5 34 34 H 1.09003 * 109.47172 * 60.00351 * 7 6 5 35 35 H 1.07997 * 119.88085 * 359.97438 * 9 8 7 36 36 H 1.08001 * 120.13089 * 180.28086 * 10 9 8 37 37 H 0.97002 * 119.99957 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.13045 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.87273 * 180.02562 * 21 20 11 40 40 H 1.09003 * 113.61867 * 220.08616 * 22 5 4 41 41 H 1.09004 * 113.61577 * 89.18610 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 -1.0602 5 6 3.1922 -1.3137 0.0013 6 7 3.5334 -2.7425 0.0040 7 6 4.8764 -2.9642 -0.5483 8 6 5.1900 -4.4382 -0.5299 9 6 5.8101 -4.9956 0.5777 10 6 6.0963 -6.3414 0.6077 11 6 5.7676 -7.1498 -0.4962 12 6 6.0629 -8.5325 -0.4793 13 1 6.1880 -9.0694 -1.4080 14 6 6.1928 -9.2055 0.7409 15 7 5.7119 -8.6741 1.8354 16 14 7.0531 -10.8623 0.8069 17 1 8.5038 -10.6575 1.0490 18 1 6.4773 -11.6755 1.9080 19 1 6.8620 -11.5710 -0.4841 20 6 5.1436 -6.5720 -1.6173 21 6 4.8611 -5.2251 -1.6227 22 6 2.1460 -0.9281 1.0602 23 1 -0.3633 0.6560 -0.7911 24 1 -0.3634 -1.0131 -0.1726 25 1 -0.3633 0.3571 0.9636 26 1 1.9361 1.8834 0.9637 27 1 3.1988 1.3512 -0.1725 28 1 1.6608 1.9995 -0.7911 29 1 1.4945 -1.7523 -1.3506 30 1 2.5650 -0.3970 -1.9149 31 1 4.0711 -0.6688 0.0008 32 1 2.8426 -3.2801 -0.4981 33 1 4.9122 -2.5983 -1.5745 34 1 5.6100 -2.4287 0.0543 35 1 6.0661 -4.3723 1.4216 36 1 6.5753 -6.7746 1.4733 37 1 5.8024 -9.1404 2.6812 38 1 4.8874 -7.1832 -2.4701 39 1 4.3818 -4.7795 -2.4818 40 1 2.5649 -0.3971 1.9150 41 1 1.4943 -1.7523 1.3507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398956464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:29 Heat of formation + Delta-G solvation = 5.096223 kcal Electronic energy + Delta-G solvation = -18554.179538 eV Core-core repulsion = 15818.608950 eV Total energy + Delta-G solvation = -2735.570588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73225 -39.44465 -36.34848 -35.00094 -32.15366 -31.14669 -30.17639 -28.27513 -27.65207 -26.57961 -24.76032 -22.85890 -22.15906 -21.65107 -19.20992 -19.14797 -17.19348 -16.76003 -16.48901 -15.81801 -15.69869 -15.39941 -15.10813 -14.88964 -14.26686 -13.98438 -13.86296 -13.76354 -13.62615 -13.33661 -13.25426 -12.80031 -12.68781 -12.63279 -12.49606 -12.32824 -12.21496 -12.00111 -11.65994 -11.41738 -11.24163 -11.02364 -10.97450 -10.84060 -9.33436 -9.28574 -9.05104 -8.62242 -6.32334 0.96327 1.16491 1.37717 1.51216 1.51921 2.21114 2.70542 3.42177 3.61468 3.69301 3.82010 3.94291 4.05762 4.32389 4.39768 4.40302 4.52526 4.58750 4.69211 4.76096 4.80177 4.85646 4.88856 4.93144 5.00280 5.06048 5.08121 5.17052 5.18279 5.23488 5.27309 5.40267 5.47970 5.54035 5.60719 5.72861 5.96546 6.11842 6.24959 6.35392 6.40837 6.57355 6.72778 6.95703 7.06074 8.34511 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045663 B = 0.003403 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.044726 B = 8226.897740 C = 8360.881292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.155 4.155 5 C 0.062 3.938 6 N -0.686 5.686 7 C 0.133 3.867 8 C -0.201 4.201 9 C -0.087 4.087 10 C -0.192 4.192 11 C 0.079 3.921 12 C -0.503 4.503 13 H 0.074 0.926 14 C 0.034 3.966 15 N -0.826 5.826 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.243 4.243 21 C -0.085 4.085 22 C -0.122 4.122 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.339 0.661 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.287 0.713 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 14.862 -2.372 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C -0.183 4.183 4 C -0.195 4.195 5 C -0.048 4.048 6 N -0.316 5.316 7 C 0.005 3.995 8 C -0.202 4.202 9 C -0.106 4.106 10 C -0.211 4.211 11 C 0.077 3.923 12 C -0.533 4.533 13 H 0.092 0.908 14 C -0.181 4.181 15 N -0.452 5.452 16 Si 0.804 3.196 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.263 4.263 21 C -0.104 4.104 22 C -0.160 4.160 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.158 0.842 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.010 14.825 -1.468 16.064 hybrid contribution 0.183 -0.956 -0.661 1.177 sum -5.827 13.869 -2.129 15.193 Atomic orbital electron populations 1.21696 0.93568 1.01647 1.02083 1.21665 0.95694 0.94866 0.96097 1.21589 1.00448 0.93845 1.02417 1.23789 0.98610 0.99724 0.97340 1.23124 0.96538 0.88346 0.96759 1.60499 1.03619 1.07686 1.59764 1.20481 0.90533 0.91613 0.96912 1.19378 1.09527 0.95664 0.95664 1.20733 0.98702 0.94305 0.96864 1.21274 1.06391 0.93152 1.00294 1.17967 0.88750 0.93756 0.91869 1.19844 1.45070 0.94524 0.93856 0.90798 1.26775 0.93228 1.03764 0.94312 1.69896 1.33950 1.40495 1.00839 0.85198 0.78932 0.76353 0.79167 1.18692 1.19217 1.18202 1.21152 1.09043 0.95743 1.00366 1.20681 0.99079 0.93241 0.97355 1.23176 0.97515 0.98496 0.96847 0.91906 0.93148 0.92164 0.91791 0.92634 0.91618 0.90440 0.91255 0.88752 0.84185 0.94776 0.91536 0.88207 0.88431 0.90218 0.88668 0.86753 0.91548 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.18 71.98 0.66 -1.49 16 2 C -0.08 -1.49 1.39 -51.66 -0.07 -1.56 16 3 C -0.13 -1.89 9.07 71.98 0.65 -1.24 16 4 C -0.16 -3.18 6.84 31.18 0.21 -2.97 16 5 C 0.06 1.51 3.83 45.50 0.17 1.68 16 6 N -0.69 -21.28 6.61 -492.55 -3.26 -24.53 16 7 C 0.13 4.44 5.65 85.56 0.48 4.92 16 8 C -0.20 -8.57 5.41 -19.67 -0.11 -8.67 16 9 C -0.09 -4.18 9.67 22.22 0.21 -3.97 16 10 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 11 C 0.08 4.40 5.58 -21.29 -0.12 4.29 16 12 C -0.50 -28.05 9.05 23.46 0.21 -27.83 16 13 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 14 C 0.03 1.76 5.14 85.26 0.44 2.20 16 15 N -0.83 -44.68 10.95 21.83 0.24 -44.44 16 16 Si 0.98 39.22 29.60 68.60 2.03 41.25 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 C -0.24 -12.24 9.80 22.73 0.22 -12.02 16 21 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 22 C -0.12 -2.72 7.03 31.12 0.22 -2.50 16 23 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.05 0.88 7.98 -2.38 -0.02 0.86 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.85 7.34 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.66 7.68 -2.39 -0.02 1.64 16 30 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 31 H 0.09 2.20 7.37 -2.39 -0.02 2.19 16 32 H 0.34 10.69 8.20 -89.69 -0.74 9.96 16 33 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.10 5.60 6.16 -2.91 -0.02 5.59 16 37 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 38 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 40 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.07 1.80 8.10 -2.38 -0.02 1.78 16 Total: -1.00 -59.16 332.57 2.88 -56.29 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.26 Total: 34.38 kcal Atomic # 6 Polarization: -66.56 SS G_CDS: 3.61 Total: -62.95 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -3.02 Total: -68.97 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -59.16 2.88 -56.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398956464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.382 kcal (2) G-P(sol) polarization free energy of solvation -59.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds