Wall clock time and date at job start Mon Mar 30 2020 07:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99848 * 2 1 4 4 H 1.48498 * 109.46757 * 274.65729 * 3 2 1 5 5 H 1.48500 * 109.47542 * 34.66211 * 3 2 1 6 6 H 1.48505 * 109.46744 * 154.66440 * 3 2 1 7 7 C 1.39943 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99720 * 162.23717 * 7 2 1 9 9 C 1.41401 * 120.00487 * 342.23902 * 7 2 1 10 10 C 1.40705 * 120.24398 * 155.28610 * 9 7 2 11 11 C 1.37625 * 119.74616 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24145 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74390 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47237 * 89.99933 * 13 12 11 15 15 C 1.46896 * 111.00140 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46824 * 85.00177 * 15 14 13 17 17 C 1.52995 * 109.46864 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47436 * 299.99668 * 17 16 15 19 19 C 1.52995 * 109.46706 * 60.00268 * 18 17 16 20 20 C 1.52999 * 109.47178 * 204.99922 * 15 14 13 21 21 C 1.38625 * 120.50388 * 0.24560 * 12 11 10 22 22 C 1.37621 * 120.25143 * 359.45560 * 21 12 11 23 23 H 0.96999 * 120.00264 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.13346 * 0.02562 * 10 9 7 25 25 H 1.07988 * 119.87571 * 180.02562 * 11 10 9 26 26 H 1.09003 * 109.47351 * 329.99903 * 13 12 11 27 27 H 1.08998 * 109.46796 * 209.99484 * 13 12 11 28 28 H 1.00907 * 111.00034 * 56.04383 * 14 13 12 29 29 H 1.08992 * 109.47095 * 325.00319 * 15 14 13 30 30 H 1.09000 * 109.46737 * 299.99946 * 16 15 14 31 31 H 1.09002 * 109.47036 * 60.00203 * 16 15 14 32 32 H 1.09005 * 109.46910 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47640 * 60.00150 * 17 16 15 34 34 H 1.09004 * 109.46713 * 300.00461 * 18 17 16 35 35 H 1.08998 * 109.47029 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47328 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47544 * 60.00072 * 19 18 17 38 38 H 1.09002 * 109.47511 * 300.00304 * 20 15 14 39 39 H 1.09004 * 109.47027 * 60.00028 * 20 15 14 40 40 H 1.08004 * 119.87953 * 179.70034 * 21 12 11 41 41 H 1.08001 * 120.13183 * 180.26974 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6223 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2848 9 6 1.3514 -2.4072 0.3746 10 6 1.8216 -3.6493 -0.0900 11 6 1.1746 -4.8062 0.2800 12 6 0.0632 -4.7507 1.1069 13 6 -0.6372 -6.0245 1.5047 14 7 -0.0437 -6.5430 2.7444 15 6 -0.7033 -7.7868 3.1637 16 6 -0.0634 -8.9727 2.4389 17 6 -0.7499 -10.2682 2.8761 18 6 -0.5881 -10.4465 4.3871 19 6 -1.2279 -9.2606 5.1119 20 6 -0.5420 -7.9653 4.6747 21 6 -0.4121 -3.5322 1.5661 22 6 0.2228 -2.3631 1.2138 23 1 -0.4850 0.8400 -0.0004 24 1 2.6870 -3.6948 -0.7346 25 1 1.5339 -5.7607 -0.0750 26 1 -0.5252 -6.7637 0.7114 27 1 -1.6959 -5.8219 1.6658 28 1 -0.0771 -5.8512 3.4782 29 1 -1.7632 -7.7378 2.9147 30 1 -0.1783 -8.8455 1.3625 31 1 0.9966 -9.0218 2.6880 32 1 -0.2938 -11.1131 2.3601 33 1 -1.8101 -10.2195 2.6275 34 1 0.4721 -10.4952 4.6357 35 1 -1.0768 -11.3696 4.6985 36 1 -1.1123 -9.3873 6.1883 37 1 -2.2881 -9.2118 4.8632 38 1 0.5181 -8.0143 4.9237 39 1 -0.9978 -7.1204 5.1910 40 1 -1.2817 -3.5003 2.2059 41 1 -0.1466 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398983992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:18 Heat of formation + Delta-G solvation = -14.617440 kcal Electronic energy + Delta-G solvation = -18659.946688 eV Core-core repulsion = 15923.521251 eV Total energy + Delta-G solvation = -2736.425436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.84492 -37.54469 -34.89190 -33.42879 -30.85136 -30.56880 -29.23625 -28.42928 -25.85008 -23.31050 -22.52487 -21.37301 -20.93899 -19.90773 -19.54655 -17.26046 -15.89067 -15.32581 -14.94889 -14.69358 -14.35354 -14.08273 -13.96904 -13.71475 -13.36390 -12.73035 -12.35752 -12.24080 -12.07726 -11.92744 -11.89771 -11.44943 -11.20476 -11.12760 -11.01217 -10.96090 -10.64686 -10.56608 -10.36307 -10.18753 -10.03037 -9.51332 -9.35948 -9.09525 -7.99412 -7.41222 -7.25755 -6.74127 -4.32062 2.76653 3.07764 3.11304 3.12840 3.20855 3.94762 4.39755 4.67585 4.69589 4.73986 5.04559 5.19402 5.29901 5.43227 5.49102 5.50066 5.58854 5.72696 5.78059 5.88439 5.92801 5.94386 6.06360 6.09909 6.16610 6.22871 6.28681 6.35991 6.43286 6.46109 6.50238 6.97730 7.10333 7.31116 7.41412 7.50564 7.65177 7.81745 7.93648 8.08794 8.18410 8.33942 8.67194 8.92748 9.01323 10.20632 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.051047 B = 0.003430 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.385940 B = 8160.453822 C = 8353.174862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.069 4.069 12 C -0.212 4.212 13 C 0.125 3.875 14 N -0.682 5.682 15 C 0.086 3.914 16 C -0.106 4.106 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.096 4.096 22 C -0.166 4.166 23 H 0.279 0.721 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.017 0.983 28 H 0.340 0.660 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -13.099 7.086 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.214 4.214 13 C -0.002 4.002 14 N -0.313 5.313 15 C -0.024 4.024 16 C -0.144 4.144 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.115 4.115 22 C -0.185 4.185 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.158 0.842 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.639 -13.255 6.744 15.104 hybrid contribution -0.568 1.196 0.224 1.343 sum -3.207 -12.059 6.968 14.292 Atomic orbital electron populations 1.69834 1.07587 1.29093 1.35495 1.25906 0.94701 1.01277 0.92251 0.86339 0.80808 0.80796 0.79013 1.19614 1.20080 1.18424 1.19594 0.98091 0.91328 1.40318 0.90511 1.17617 0.91045 0.92014 0.88346 1.20979 1.03820 0.92991 1.06990 1.20331 0.94953 0.96226 0.97264 1.18911 1.01631 0.92393 1.08457 1.20583 0.93939 0.94584 0.91133 1.60660 1.57823 1.05939 1.06887 1.21508 0.95683 0.91365 0.93845 1.21516 1.00271 0.92838 0.99823 1.21551 1.00662 0.97846 0.95704 1.21537 1.00966 0.97636 0.95506 1.21488 0.99695 0.94734 0.99500 1.21705 1.01562 0.97278 0.95336 1.20518 0.98353 0.92943 0.99653 1.21265 0.99378 0.96622 1.01245 0.90971 0.89137 0.89516 0.92147 0.96460 0.84189 0.94613 0.92178 0.91404 0.92147 0.92369 0.91949 0.92427 0.92126 0.92251 0.91130 0.92278 0.89983 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.75 10.97 55.55 0.61 -20.14 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.48 9.05 -37.74 -0.34 -12.83 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.11 3.04 5.57 -106.83 -0.60 2.44 16 10 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 11 C -0.07 -1.58 9.67 -39.66 -0.38 -1.97 16 12 C -0.21 -4.66 5.41 -104.33 -0.56 -5.22 16 13 C 0.13 2.26 5.60 -4.97 -0.03 2.23 16 14 N -0.68 -10.95 6.30 -107.99 -0.68 -11.63 16 15 C 0.09 1.13 2.49 -67.71 -0.17 0.96 16 16 C -0.11 -1.31 5.43 -26.73 -0.15 -1.45 16 17 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 18 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 19 C -0.12 -1.09 5.92 -26.76 -0.16 -1.25 16 20 C -0.12 -1.36 5.19 -26.76 -0.14 -1.50 16 21 C -0.10 -2.24 9.67 -39.66 -0.38 -2.62 16 22 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 23 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 26 H 0.06 1.06 7.38 -51.93 -0.38 0.68 16 27 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 28 H 0.34 5.49 8.34 -39.29 -0.33 5.17 16 29 H 0.04 0.49 7.80 -51.93 -0.40 0.08 16 30 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.12 3.13 6.18 -52.49 -0.32 2.81 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -26.94 326.43 -11.08 -38.02 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.86 Total: 7.80 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: -4.03 Total: -32.74 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: -0.07 Total: -31.77 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.94 -11.08 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398983992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.404 kcal (2) G-P(sol) polarization free energy of solvation -26.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds