Wall clock time and date at job start Mon Mar 30 2020 07:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99848 * 2 1 4 4 H 1.48498 * 109.46757 * 274.65729 * 3 2 1 5 5 H 1.48500 * 109.47542 * 34.66211 * 3 2 1 6 6 H 1.48505 * 109.46744 * 154.66440 * 3 2 1 7 7 C 1.39943 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99720 * 162.23717 * 7 2 1 9 9 C 1.41401 * 120.00487 * 342.23902 * 7 2 1 10 10 C 1.40705 * 120.24398 * 155.28610 * 9 7 2 11 11 C 1.37625 * 119.74616 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24145 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74390 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47237 * 89.99933 * 13 12 11 15 15 C 1.46896 * 111.00140 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46824 * 85.00177 * 15 14 13 17 17 C 1.52995 * 109.46864 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47436 * 299.99668 * 17 16 15 19 19 C 1.52995 * 109.46706 * 60.00268 * 18 17 16 20 20 C 1.52999 * 109.47178 * 204.99922 * 15 14 13 21 21 C 1.38625 * 120.50388 * 0.24560 * 12 11 10 22 22 C 1.37621 * 120.25143 * 359.45560 * 21 12 11 23 23 H 0.96999 * 120.00264 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.13346 * 0.02562 * 10 9 7 25 25 H 1.07988 * 119.87571 * 180.02562 * 11 10 9 26 26 H 1.09003 * 109.47351 * 329.99903 * 13 12 11 27 27 H 1.08998 * 109.46796 * 209.99484 * 13 12 11 28 28 H 1.00907 * 111.00034 * 56.04383 * 14 13 12 29 29 H 1.08992 * 109.47095 * 325.00319 * 15 14 13 30 30 H 1.09000 * 109.46737 * 299.99946 * 16 15 14 31 31 H 1.09002 * 109.47036 * 60.00203 * 16 15 14 32 32 H 1.09005 * 109.46910 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47640 * 60.00150 * 17 16 15 34 34 H 1.09004 * 109.46713 * 300.00461 * 18 17 16 35 35 H 1.08998 * 109.47029 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47328 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47544 * 60.00072 * 19 18 17 38 38 H 1.09002 * 109.47511 * 300.00304 * 20 15 14 39 39 H 1.09004 * 109.47027 * 60.00028 * 20 15 14 40 40 H 1.08004 * 119.87953 * 179.70034 * 21 12 11 41 41 H 1.08001 * 120.13183 * 180.26974 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6223 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2848 9 6 1.3514 -2.4072 0.3746 10 6 1.8216 -3.6493 -0.0900 11 6 1.1746 -4.8062 0.2800 12 6 0.0632 -4.7507 1.1069 13 6 -0.6372 -6.0245 1.5047 14 7 -0.0437 -6.5430 2.7444 15 6 -0.7033 -7.7868 3.1637 16 6 -0.0634 -8.9727 2.4389 17 6 -0.7499 -10.2682 2.8761 18 6 -0.5881 -10.4465 4.3871 19 6 -1.2279 -9.2606 5.1119 20 6 -0.5420 -7.9653 4.6747 21 6 -0.4121 -3.5322 1.5661 22 6 0.2228 -2.3631 1.2138 23 1 -0.4850 0.8400 -0.0004 24 1 2.6870 -3.6948 -0.7346 25 1 1.5339 -5.7607 -0.0750 26 1 -0.5252 -6.7637 0.7114 27 1 -1.6959 -5.8219 1.6658 28 1 -0.0771 -5.8512 3.4782 29 1 -1.7632 -7.7378 2.9147 30 1 -0.1783 -8.8455 1.3625 31 1 0.9966 -9.0218 2.6880 32 1 -0.2938 -11.1131 2.3601 33 1 -1.8101 -10.2195 2.6275 34 1 0.4721 -10.4952 4.6357 35 1 -1.0768 -11.3696 4.6985 36 1 -1.1123 -9.3873 6.1883 37 1 -2.2881 -9.2118 4.8632 38 1 0.5181 -8.0143 4.9237 39 1 -0.9978 -7.1204 5.1910 40 1 -1.2817 -3.5003 2.2059 41 1 -0.1466 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398983992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:17 Heat of formation + Delta-G solvation = -27.652543 kcal Electronic energy + Delta-G solvation = -18660.511932 eV Core-core repulsion = 15923.521251 eV Total energy + Delta-G solvation = -2736.990681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.97376 -39.22768 -36.34411 -35.10025 -32.24580 -31.63473 -31.14045 -29.80964 -27.48632 -24.85683 -23.47473 -22.84632 -22.37924 -21.57501 -20.55334 -19.21145 -17.31330 -16.84895 -16.13729 -16.06451 -15.63881 -15.54250 -15.17809 -15.03331 -14.77524 -14.30930 -13.81500 -13.63770 -13.57323 -13.17989 -13.00771 -12.95200 -12.81088 -12.65521 -12.39077 -12.08797 -12.06095 -11.96534 -11.46451 -11.37852 -11.28469 -11.08440 -10.99706 -10.90168 -9.40092 -9.26579 -9.13943 -8.63580 -6.32631 0.95116 1.16406 1.37706 1.48391 1.54285 2.21075 2.69782 3.34329 3.78445 3.83292 3.89414 4.18082 4.28707 4.30969 4.36179 4.43035 4.54790 4.59132 4.65318 4.66836 4.67861 4.74217 4.81683 5.00306 5.04812 5.15341 5.16832 5.20063 5.30803 5.31532 5.37057 5.38470 5.43116 5.48586 5.58228 5.72202 5.97096 6.11239 6.22806 6.29432 6.40825 6.56608 6.71311 6.95283 7.05188 8.33758 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.051047 B = 0.003430 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.385940 B = 8160.453822 C = 8353.174862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.245 4.245 11 C -0.073 4.073 12 C -0.200 4.200 13 C 0.134 3.866 14 N -0.689 5.689 15 C 0.086 3.914 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.098 4.098 22 C -0.189 4.189 23 H 0.288 0.712 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.338 0.662 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -14.404 7.945 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.264 4.264 11 C -0.092 4.092 12 C -0.201 4.201 13 C 0.006 3.994 14 N -0.320 5.320 15 C -0.023 4.023 16 C -0.143 4.143 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.117 4.117 22 C -0.208 4.208 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.157 0.843 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.108 -14.587 7.605 16.741 hybrid contribution -0.475 1.447 -0.025 1.524 sum -3.583 -13.139 7.581 15.587 Atomic orbital electron populations 1.69881 1.09002 1.30480 1.35925 1.26758 0.95500 1.04502 0.91191 0.85206 0.79180 0.75990 0.79396 1.18689 1.18929 1.18345 1.19833 0.98277 0.92681 1.42525 0.90885 1.17960 0.91984 0.93006 0.89314 1.21178 1.04431 0.93342 1.07493 1.20628 0.94978 0.96500 0.97061 1.19335 1.00671 0.93659 1.06473 1.20458 0.93821 0.92756 0.92388 1.60602 1.58315 1.06852 1.06225 1.21596 0.95372 0.90043 0.95296 1.21502 0.99929 0.93821 0.99073 1.21529 1.00604 0.96715 0.96532 1.21542 1.01089 0.98221 0.94664 1.21483 0.99601 0.93670 1.00357 1.21679 1.01492 0.98560 0.93840 1.20765 0.98692 0.92656 0.99588 1.21241 1.00210 0.97018 1.02372 0.90182 0.88799 0.87156 0.91371 0.95696 0.84349 0.94604 0.93258 0.92370 0.91177 0.92010 0.92105 0.90736 0.90805 0.91909 0.91744 0.92187 0.87886 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.22 10.97 21.83 0.24 -43.98 16 2 C 0.04 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.50 -28.10 9.05 23.46 0.21 -27.88 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 9 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 10 C -0.24 -12.54 9.80 22.73 0.22 -12.32 16 11 C -0.07 -3.32 9.67 22.22 0.21 -3.10 16 12 C -0.20 -8.59 5.41 -19.68 -0.11 -8.70 16 13 C 0.13 4.58 5.60 85.56 0.48 5.06 16 14 N -0.69 -21.02 6.30 -495.58 -3.12 -24.14 16 15 C 0.09 2.09 2.49 44.92 0.11 2.21 16 16 C -0.10 -2.39 5.43 30.59 0.17 -2.23 16 17 C -0.12 -2.01 5.92 30.59 0.18 -1.82 16 18 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 19 C -0.11 -1.81 5.92 30.58 0.18 -1.63 16 20 C -0.12 -2.41 5.19 30.58 0.16 -2.25 16 21 C -0.10 -4.59 9.67 22.22 0.21 -4.38 16 22 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 23 H 0.29 13.84 8.30 -92.71 -0.77 13.08 16 24 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 25 H 0.11 4.43 8.06 -2.92 -0.02 4.41 16 26 H 0.07 2.25 7.38 -2.39 -0.02 2.23 16 27 H 0.02 0.82 7.99 -2.39 -0.02 0.80 16 28 H 0.34 10.47 8.34 -89.69 -0.75 9.72 16 29 H 0.04 0.89 7.80 -2.39 -0.02 0.87 16 30 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.21 8.12 -2.38 -0.02 1.19 16 40 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.10 5.58 6.18 -2.91 -0.02 5.56 16 Total: -1.00 -58.77 326.43 2.13 -56.64 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.24 Total: 32.49 kcal Atomic # 6 Polarization: -64.81 SS G_CDS: 2.73 Total: -62.07 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -2.88 Total: -68.12 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -58.77 2.13 -56.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398983992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.989 kcal (2) G-P(sol) polarization free energy of solvation -58.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds