Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47067 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47249 * 120.00028 * 3 2 1 7 7 C 1.39944 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00401 * 197.84544 * 7 2 1 9 9 C 1.41403 * 119.99886 * 17.84169 * 7 2 1 10 10 C 1.40720 * 120.24036 * 204.39055 * 9 7 2 11 11 C 1.37619 * 119.73844 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25177 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75295 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47624 * 89.99586 * 13 12 11 15 15 C 1.46898 * 111.00514 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47424 * 180.02562 * 15 14 13 17 17 C 1.54966 * 110.92487 * 71.53751 * 16 15 14 18 18 C 1.54263 * 104.16130 * 156.29455 * 17 16 15 19 19 C 1.53872 * 106.64170 * 336.44968 * 18 17 16 20 20 C 1.54267 * 106.59689 * 359.97258 * 19 18 17 21 21 C 1.38637 * 120.50169 * 0.25207 * 12 11 10 22 22 C 1.37623 * 120.24534 * 359.45079 * 21 12 11 23 23 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.12923 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.87249 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.46839 * 329.99705 * 13 12 11 27 27 H 1.09000 * 109.47413 * 210.00145 * 13 12 11 28 28 H 1.00902 * 110.99799 * 303.96303 * 14 13 12 29 29 H 1.09002 * 109.46725 * 59.99791 * 15 14 13 30 30 H 1.08997 * 109.46549 * 300.00437 * 15 14 13 31 31 H 1.08998 * 110.67316 * 308.23319 * 16 15 14 32 32 H 1.09004 * 110.47299 * 37.64572 * 17 16 15 33 33 H 1.09000 * 110.53009 * 274.97944 * 17 16 15 34 34 H 1.08994 * 110.03330 * 217.13263 * 18 17 16 35 35 H 1.09003 * 110.02863 * 95.75402 * 18 17 16 36 36 H 1.08996 * 110.03356 * 119.25671 * 19 18 17 37 37 H 1.09000 * 110.03024 * 240.64215 * 19 18 17 38 38 H 1.09005 * 110.48603 * 142.28562 * 20 19 18 39 39 H 1.08994 * 110.48804 * 264.79657 * 20 19 18 40 40 H 1.08001 * 119.87646 * 179.70296 * 21 12 11 41 41 H 1.08001 * 120.12255 * 180.27389 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3763 10 6 1.8258 -3.6499 0.0826 11 6 1.1797 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6319 -6.0238 -1.5157 14 7 -1.6778 -6.3392 -0.5336 15 6 -2.3812 -7.5778 -0.8930 16 6 -3.4608 -7.8723 0.1503 17 6 -4.6388 -6.8732 0.0251 18 6 -5.8352 -7.6202 0.6497 19 6 -5.5168 -9.1224 0.5514 20 6 -4.1377 -9.2368 -0.1303 21 6 -0.4055 -3.5316 -1.5770 22 6 0.2212 -2.3618 -1.2124 23 1 -0.4850 0.8401 0.0004 24 1 2.6935 -3.6961 0.7239 25 1 1.5417 -5.7617 0.0607 26 1 0.0909 -6.8389 -1.5512 27 1 -1.0837 -5.8959 -2.4994 28 1 -1.2934 -6.3991 0.3974 29 1 -1.6703 -8.4034 -0.9238 30 1 -2.8451 -7.4609 -1.8724 31 1 -3.0407 -7.8490 1.1558 32 1 -4.8359 -6.6456 -1.0226 33 1 -4.4264 -5.9602 0.5814 34 1 -6.7465 -7.3946 0.0960 35 1 -5.9520 -7.3308 1.6941 36 1 -5.4782 -9.5618 1.5481 37 1 -6.2741 -9.6260 -0.0494 38 1 -3.5593 -10.0477 0.3125 39 1 -4.2541 -9.3939 -1.2026 40 1 -1.2706 -3.4998 -2.2227 41 1 -0.1509 -1.4132 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398990244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = -12.239425 kcal Electronic energy + Delta-G solvation = -18434.789337 eV Core-core repulsion = 15698.467020 eV Total energy + Delta-G solvation = -2736.322318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.49788 -37.61698 -35.26867 -33.52184 -30.83999 -29.29436 -28.92503 -28.60564 -26.20562 -23.75707 -22.44221 -20.91673 -20.30345 -20.13313 -19.59451 -17.25998 -15.92541 -15.64170 -15.28553 -14.66407 -14.38032 -14.12139 -13.73768 -13.54322 -13.23384 -13.21996 -12.52321 -11.95583 -11.84852 -11.70224 -11.55335 -11.29714 -11.08598 -11.05485 -10.98079 -10.84028 -10.65571 -10.53519 -10.42469 -10.35408 -10.34272 -9.54914 -9.33021 -9.09071 -7.95935 -7.40156 -7.26448 -6.72592 -4.31774 2.78894 3.07853 3.10469 3.11782 3.21895 3.95085 4.40176 4.61984 4.64435 4.70490 5.00375 5.22420 5.41926 5.50757 5.56832 5.62491 5.66888 5.73616 5.78464 5.85091 5.91360 5.94344 5.95819 6.04475 6.10506 6.27611 6.29574 6.39992 6.41889 6.48234 6.50413 6.99566 7.10422 7.33693 7.40115 7.49644 7.65332 7.79283 7.94571 8.09126 8.19516 8.33997 8.68331 8.93000 9.01864 10.21671 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.003507 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.963336 B = 7981.252079 C = 8477.190603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.213 4.213 13 C 0.125 3.875 14 N -0.682 5.682 15 C 0.065 3.935 16 C -0.089 4.089 17 C -0.107 4.107 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.079 4.079 22 C -0.167 4.167 23 H 0.281 0.719 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.016 0.984 27 H 0.060 0.940 28 H 0.339 0.661 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 -12.000 -0.460 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.247 4.247 11 C -0.105 4.105 12 C -0.214 4.214 13 C -0.003 4.003 14 N -0.313 5.313 15 C -0.064 4.064 16 C -0.108 4.108 17 C -0.145 4.145 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.098 4.098 22 C -0.187 4.187 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.289 -11.434 -0.751 14.143 hybrid contribution 0.984 0.106 0.349 1.049 sum -7.305 -11.328 -0.402 13.486 Atomic orbital electron populations 1.69832 1.07544 1.29249 1.35027 1.25905 0.94708 1.01240 0.92313 0.86391 0.80164 0.80352 0.79932 1.18860 1.20351 1.19061 1.19560 0.98079 0.91373 1.40413 0.90588 1.17615 0.91113 0.91936 0.88365 1.20924 1.03831 0.92922 1.07065 1.20348 0.95892 0.96209 0.98006 1.18912 1.00407 0.93185 1.08920 1.20546 0.90603 0.94453 0.94673 1.60611 1.31185 1.33523 1.06016 1.21956 0.95163 0.90824 0.98459 1.22130 0.95322 0.94338 0.99022 1.22287 0.93067 0.98132 1.01011 1.22185 0.98695 0.94892 1.00846 1.22109 0.96968 0.96704 1.00329 1.22385 0.95746 0.97138 1.00524 1.20500 0.97687 0.92499 0.99106 1.21309 0.99478 0.96751 1.01141 0.90849 0.89217 0.89995 0.96577 0.92132 0.84351 0.96144 0.91485 0.90897 0.91758 0.91033 0.92244 0.92142 0.92203 0.92244 0.92078 0.91686 0.89515 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 10.95 55.55 0.61 -20.13 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.49 9.05 -37.74 -0.34 -12.83 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.11 3.03 5.57 -106.82 -0.60 2.44 16 10 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 11 C -0.09 -1.93 9.67 -39.66 -0.38 -2.31 16 12 C -0.21 -4.65 5.41 -104.33 -0.56 -5.22 16 13 C 0.13 2.24 5.80 -4.98 -0.03 2.21 16 14 N -0.68 -11.12 6.41 -115.06 -0.74 -11.86 16 15 C 0.07 0.86 5.13 -3.83 -0.02 0.84 16 16 C -0.09 -1.04 3.04 -88.59 -0.27 -1.31 16 17 C -0.11 -1.29 6.22 -25.03 -0.16 -1.45 16 18 C -0.13 -1.30 6.80 -25.62 -0.17 -1.47 16 19 C -0.12 -1.13 6.80 -25.61 -0.17 -1.31 16 20 C -0.12 -1.17 6.27 -25.07 -0.16 -1.33 16 21 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 22 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 23 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 24 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 25 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.02 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.34 5.57 8.72 -39.29 -0.34 5.23 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 41 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -26.89 331.92 -11.17 -38.06 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.95 Total: 8.08 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: -4.06 Total: -32.95 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.13 Total: -31.99 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.89 -11.17 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.821 kcal (2) G-P(sol) polarization free energy of solvation -26.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds