Wall clock time and date at job start Mon Mar 30 2020 07:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47067 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47249 * 120.00028 * 3 2 1 7 7 C 1.39944 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00401 * 197.84544 * 7 2 1 9 9 C 1.41403 * 119.99886 * 17.84169 * 7 2 1 10 10 C 1.40720 * 120.24036 * 204.39055 * 9 7 2 11 11 C 1.37619 * 119.73844 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25177 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75295 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47624 * 89.99586 * 13 12 11 15 15 C 1.46898 * 111.00514 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47424 * 180.02562 * 15 14 13 17 17 C 1.54966 * 110.92487 * 71.53751 * 16 15 14 18 18 C 1.54263 * 104.16130 * 156.29455 * 17 16 15 19 19 C 1.53872 * 106.64170 * 336.44968 * 18 17 16 20 20 C 1.54267 * 106.59689 * 359.97258 * 19 18 17 21 21 C 1.38637 * 120.50169 * 0.25207 * 12 11 10 22 22 C 1.37623 * 120.24534 * 359.45079 * 21 12 11 23 23 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.12923 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.87249 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.46839 * 329.99705 * 13 12 11 27 27 H 1.09000 * 109.47413 * 210.00145 * 13 12 11 28 28 H 1.00902 * 110.99799 * 303.96303 * 14 13 12 29 29 H 1.09002 * 109.46725 * 59.99791 * 15 14 13 30 30 H 1.08997 * 109.46549 * 300.00437 * 15 14 13 31 31 H 1.08998 * 110.67316 * 308.23319 * 16 15 14 32 32 H 1.09004 * 110.47299 * 37.64572 * 17 16 15 33 33 H 1.09000 * 110.53009 * 274.97944 * 17 16 15 34 34 H 1.08994 * 110.03330 * 217.13263 * 18 17 16 35 35 H 1.09003 * 110.02863 * 95.75402 * 18 17 16 36 36 H 1.08996 * 110.03356 * 119.25671 * 19 18 17 37 37 H 1.09000 * 110.03024 * 240.64215 * 19 18 17 38 38 H 1.09005 * 110.48603 * 142.28562 * 20 19 18 39 39 H 1.08994 * 110.48804 * 264.79657 * 20 19 18 40 40 H 1.08001 * 119.87646 * 179.70296 * 21 12 11 41 41 H 1.08001 * 120.12255 * 180.27389 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3763 10 6 1.8258 -3.6499 0.0826 11 6 1.1797 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6319 -6.0238 -1.5157 14 7 -1.6778 -6.3392 -0.5336 15 6 -2.3812 -7.5778 -0.8930 16 6 -3.4608 -7.8723 0.1503 17 6 -4.6388 -6.8732 0.0251 18 6 -5.8352 -7.6202 0.6497 19 6 -5.5168 -9.1224 0.5514 20 6 -4.1377 -9.2368 -0.1303 21 6 -0.4055 -3.5316 -1.5770 22 6 0.2212 -2.3618 -1.2124 23 1 -0.4850 0.8401 0.0004 24 1 2.6935 -3.6961 0.7239 25 1 1.5417 -5.7617 0.0607 26 1 0.0909 -6.8389 -1.5512 27 1 -1.0837 -5.8959 -2.4994 28 1 -1.2934 -6.3991 0.3974 29 1 -1.6703 -8.4034 -0.9238 30 1 -2.8451 -7.4609 -1.8724 31 1 -3.0407 -7.8490 1.1558 32 1 -4.8359 -6.6456 -1.0226 33 1 -4.4264 -5.9602 0.5814 34 1 -6.7465 -7.3946 0.0960 35 1 -5.9520 -7.3308 1.6941 36 1 -5.4782 -9.5618 1.5481 37 1 -6.2741 -9.6260 -0.0494 38 1 -3.5593 -10.0477 0.3125 39 1 -4.2541 -9.3939 -1.2026 40 1 -1.2706 -3.4998 -2.2227 41 1 -0.1509 -1.4132 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398990244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:20 Heat of formation + Delta-G solvation = -25.155307 kcal Electronic energy + Delta-G solvation = -18435.349412 eV Core-core repulsion = 15698.467020 eV Total energy + Delta-G solvation = -2736.882393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70650 -39.15250 -36.68306 -35.27810 -32.39054 -31.15507 -30.29735 -29.47242 -27.82117 -25.22076 -23.76710 -22.82250 -21.73959 -21.01011 -20.81269 -19.20376 -17.20100 -16.88673 -16.79597 -15.89830 -15.73158 -15.60173 -15.23799 -15.07162 -14.60370 -14.18069 -14.08593 -13.79529 -13.41052 -13.32770 -12.84594 -12.69927 -12.65085 -12.37988 -12.10977 -12.07489 -11.88482 -11.76939 -11.60733 -11.40943 -11.32268 -11.21539 -11.19626 -10.97934 -9.33136 -9.31984 -9.08589 -8.61916 -6.31961 0.97313 1.16937 1.37708 1.49086 1.53831 2.21189 2.70776 3.38542 3.75992 3.79647 3.86021 3.98580 4.27299 4.34381 4.41460 4.55750 4.58824 4.62462 4.65116 4.71336 4.79157 4.84188 4.90195 4.90778 4.98629 5.08288 5.12271 5.17132 5.17727 5.27395 5.40508 5.41702 5.48626 5.56048 5.56912 5.73118 5.96555 6.11796 6.21518 6.32225 6.41076 6.56550 6.72981 6.95935 7.06417 8.34660 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.003507 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.963336 B = 7981.252079 C = 8477.190603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.244 4.244 11 C -0.085 4.085 12 C -0.200 4.200 13 C 0.132 3.868 14 N -0.694 5.694 15 C 0.070 3.930 16 C -0.088 4.088 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.087 4.087 22 C -0.192 4.192 23 H 0.287 0.713 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.337 0.663 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 -13.670 -0.539 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.263 4.263 11 C -0.103 4.103 12 C -0.202 4.202 13 C 0.004 3.996 14 N -0.325 5.325 15 C -0.059 4.059 16 C -0.107 4.107 17 C -0.148 4.148 18 C -0.165 4.165 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.105 4.105 22 C -0.211 4.211 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.690 -13.129 -0.829 15.766 hybrid contribution 1.037 0.478 0.358 1.197 sum -7.653 -12.651 -0.471 14.793 Atomic orbital electron populations 1.69893 1.09034 1.30521 1.35712 1.26772 0.95480 1.04542 0.91253 0.85259 0.78780 0.75646 0.80038 1.18516 1.19163 1.18341 1.19818 0.98334 0.92689 1.42540 0.90766 1.17965 0.91958 0.93120 0.89311 1.21151 1.04447 0.93233 1.07493 1.20682 0.95520 0.96786 0.97359 1.19355 0.99718 0.94261 1.06823 1.20448 0.91223 0.92753 0.95184 1.60521 1.30622 1.35785 1.05581 1.21987 0.95383 0.89658 0.98899 1.22108 0.94736 0.95500 0.98327 1.22266 0.94426 0.97675 1.00395 1.22175 0.98047 0.95533 1.00730 1.22110 0.96945 0.95827 1.00988 1.22362 0.95891 0.95986 1.01046 1.20729 0.97926 0.92613 0.99281 1.21267 1.00424 0.97004 1.02424 0.90213 0.88668 0.86732 0.94815 0.91533 0.84479 0.94930 0.91390 0.91341 0.92385 0.93291 0.91606 0.92162 0.91489 0.91004 0.91027 0.91192 0.88229 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.65 10.95 21.83 0.24 -44.42 16 2 C 0.03 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 39.17 29.60 68.60 2.03 41.20 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 10 C -0.24 -12.24 9.80 22.73 0.22 -12.02 16 11 C -0.08 -3.71 9.67 22.22 0.21 -3.49 16 12 C -0.20 -8.52 5.41 -19.68 -0.11 -8.62 16 13 C 0.13 4.40 5.80 85.56 0.50 4.90 16 14 N -0.69 -21.28 6.41 -517.95 -3.32 -24.60 16 15 C 0.07 1.66 5.13 86.30 0.44 2.10 16 16 C -0.09 -1.88 3.04 -9.48 -0.03 -1.91 16 17 C -0.11 -2.54 6.22 31.69 0.20 -2.34 16 18 C -0.13 -2.36 6.80 31.32 0.21 -2.15 16 19 C -0.12 -1.89 6.80 31.32 0.21 -1.68 16 20 C -0.11 -1.91 6.27 31.67 0.20 -1.72 16 21 C -0.09 -4.15 9.67 22.22 0.21 -3.94 16 22 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 23 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 24 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 25 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 26 H 0.03 1.03 8.08 -2.38 -0.02 1.01 16 27 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.34 10.49 8.72 -89.69 -0.78 9.71 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.63 8.00 -2.39 -0.02 1.61 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.39 7.95 -2.38 -0.02 1.37 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.07 1.11 8.05 -2.39 -0.02 1.09 16 40 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 Total: -1.00 -59.04 331.92 2.16 -56.88 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.21 Total: 33.44 kcal Atomic # 6 Polarization: -65.51 SS G_CDS: 3.01 Total: -62.50 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -3.08 Total: -69.01 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -59.04 2.16 -56.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.724 kcal (2) G-P(sol) polarization free energy of solvation -59.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds