Wall clock time and date at job start Mon Mar 30 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 110.02142 * 2 1 4 4 C 1.46909 * 110.99458 * 59.29976 * 3 2 1 5 5 C 1.50694 * 109.46791 * 180.02562 * 4 3 2 6 6 C 1.38643 * 119.75070 * 269.72397 * 5 4 3 7 7 C 1.37616 * 120.24675 * 179.72183 * 6 5 4 8 8 C 1.40709 * 119.74690 * 0.57272 * 7 6 5 9 9 C 1.41402 * 120.24502 * 179.68283 * 8 7 6 10 10 H 1.07998 * 119.99707 * 24.40538 * 9 8 7 11 11 C 1.39944 * 120.00026 * 204.41099 * 9 8 7 12 12 N 1.30821 * 119.99947 * 17.85336 * 11 9 8 13 13 Si 1.86801 * 119.99893 * 197.85208 * 11 9 8 14 14 H 1.48498 * 109.47267 * 60.00397 * 13 11 9 15 15 H 1.48502 * 109.46921 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47017 * 300.00066 * 13 11 9 17 17 C 1.40711 * 119.51343 * 359.70352 * 8 7 6 18 18 C 1.37616 * 119.74417 * 0.02562 * 17 8 7 19 19 C 1.54268 * 110.03108 * 121.39685 * 2 1 3 20 20 C 1.54959 * 104.16392 * 95.75322 * 19 2 1 21 21 C 1.54893 * 102.77668 * 37.88878 * 20 19 2 22 22 C 1.53874 * 110.03223 * 238.60943 * 2 1 3 23 23 H 1.09000 * 109.47133 * 60.69637 * 1 2 3 24 24 H 1.09000 * 109.47159 * 180.69723 * 1 2 3 25 25 H 1.09002 * 109.47019 * 300.70273 * 1 2 3 26 26 H 1.00891 * 110.99997 * 295.34911 * 3 2 1 27 27 H 1.09001 * 109.46992 * 299.99925 * 4 3 2 28 28 H 1.08997 * 109.47077 * 60.00386 * 4 3 2 29 29 H 1.08004 * 119.86997 * 359.97438 * 6 5 4 30 30 H 1.08004 * 120.12454 * 180.27941 * 7 6 5 31 31 H 0.96998 * 120.00127 * 179.97438 * 12 11 9 32 32 H 1.08004 * 120.13322 * 179.97438 * 17 8 7 33 33 H 1.08001 * 119.87626 * 180.02562 * 18 17 8 34 34 H 1.09010 * 110.48495 * 214.39985 * 19 2 1 35 35 H 1.09001 * 110.48392 * 337.03728 * 19 2 1 36 36 H 1.09000 * 110.71902 * 279.57278 * 20 19 2 37 37 H 1.09006 * 110.92348 * 156.29685 * 20 19 2 38 38 H 1.09002 * 110.48090 * 203.40679 * 21 20 19 39 39 H 1.09000 * 110.48680 * 80.76417 * 21 20 19 40 40 H 1.08998 * 110.03485 * 359.95090 * 22 2 1 41 41 H 1.08999 * 110.03114 * 121.33612 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0329 1.3802 0.0000 4 6 1.5552 2.1145 1.1793 5 6 2.0897 3.5230 1.1445 6 6 3.3037 3.8133 1.7479 7 6 3.8041 5.0949 1.7173 8 6 3.0730 6.1149 1.0809 9 6 3.5741 7.4367 1.0489 10 1 4.6355 7.6141 1.1393 11 6 2.6945 8.5151 0.9004 12 7 1.4180 8.3555 1.1382 13 14 3.3433 10.1822 0.3627 14 1 3.9856 10.0570 -0.9703 15 1 2.2183 11.1481 0.2807 16 1 4.3415 10.6667 1.3496 17 6 1.8393 5.8099 0.4767 18 6 1.3608 4.5201 0.5147 19 6 2.0584 -0.7551 1.2371 20 6 2.3298 -2.1898 0.7184 21 6 2.8885 -1.9396 -0.7044 22 6 2.0571 -0.7530 -1.2341 23 1 -0.3633 0.5030 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 1.7778 1.8580 -0.8512 27 1 0.4655 2.1396 1.1749 28 1 1.9035 1.6156 2.0836 29 1 3.8606 3.0298 2.2403 30 1 4.7522 5.3179 2.1841 31 1 0.8085 9.1030 1.0356 32 1 1.2696 6.5851 -0.0142 33 1 0.4144 4.2836 0.0514 34 1 2.9807 -0.2990 1.5973 35 1 1.3057 -0.7695 2.0255 36 1 1.4052 -2.7654 0.6747 37 1 3.0687 -2.6953 1.3402 38 1 2.7414 -2.8187 -1.3319 39 1 3.9448 -1.6750 -0.6584 40 1 1.2229 -1.1192 -1.8325 41 1 2.6853 -0.0940 -1.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399008211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:34 Heat of formation + Delta-G solvation = -4.279229 kcal Electronic energy + Delta-G solvation = -18954.495968 eV Core-core repulsion = 16218.518830 eV Total energy + Delta-G solvation = -2735.977138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.19021 -37.48733 -34.58202 -33.31224 -30.61173 -29.25779 -28.77026 -28.66135 -26.23201 -24.80197 -22.99597 -21.00180 -20.70855 -19.66970 -18.67864 -17.25451 -15.89882 -15.55463 -15.20446 -14.67613 -14.21625 -13.88904 -13.61692 -13.48676 -13.28835 -12.80514 -12.43406 -12.42078 -11.90631 -11.56696 -11.51438 -11.36344 -11.08474 -11.05306 -10.91483 -10.88565 -10.73835 -10.56298 -10.50591 -10.39394 -10.25914 -9.51504 -9.35157 -9.08990 -7.95921 -7.40493 -7.24980 -6.73588 -4.31637 2.78602 3.07346 3.10185 3.12763 3.22384 3.94858 4.47292 4.57189 4.71411 4.74639 5.06084 5.30160 5.35713 5.44974 5.53082 5.67617 5.73842 5.77093 5.85989 5.87720 5.94602 5.95267 6.02812 6.06930 6.19706 6.28230 6.33234 6.39120 6.43667 6.47165 6.47832 6.98280 7.10684 7.31946 7.42230 7.55082 7.65594 7.83628 7.95155 8.09073 8.19340 8.34469 8.67610 8.93139 9.01898 10.21039 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.003764 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.009486 B = 7436.879087 C = 7584.737611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 N -0.671 5.671 4 C 0.121 3.879 5 C -0.212 4.212 6 C -0.070 4.070 7 C -0.228 4.228 8 C 0.112 3.888 9 C -0.465 4.465 10 H 0.076 0.924 11 C 0.077 3.923 12 N -0.795 5.795 13 Si 0.907 3.093 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.166 4.166 18 C -0.096 4.096 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.114 4.114 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.338 0.662 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.280 0.720 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 -13.977 -2.675 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.014 3.986 3 N -0.302 5.302 4 C -0.007 4.007 5 C -0.213 4.213 6 C -0.088 4.088 7 C -0.248 4.248 8 C 0.110 3.890 9 C -0.494 4.494 10 H 0.095 0.905 11 C -0.141 4.141 12 N -0.420 5.420 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.190 1.190 17 C -0.185 4.185 18 C -0.115 4.115 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.215 -14.000 -2.369 14.251 hybrid contribution -0.832 1.043 -0.418 1.398 sum -2.047 -12.957 -2.787 13.411 Atomic orbital electron populations 1.22578 0.97508 1.01623 1.01932 1.21597 0.91592 0.90227 0.95206 1.60979 1.62561 1.00894 1.05734 1.20594 0.95497 0.91983 0.92577 1.18932 0.98578 0.92947 1.10864 1.20329 0.94679 0.95296 0.98531 1.20971 1.01967 0.93865 1.08008 1.17608 0.91270 0.92474 0.87678 1.19569 0.94797 0.90576 1.44491 0.90549 1.25898 0.94473 1.01234 0.92485 1.69822 1.04035 1.33524 1.34628 0.86390 0.79323 0.80743 0.80384 1.18839 1.20390 1.19027 1.21270 0.98877 0.94680 1.03719 1.20518 0.97525 0.93801 0.99644 1.22450 1.01498 0.94461 0.96458 1.22477 1.00335 0.96863 0.96473 1.22282 0.99869 0.97468 0.96086 1.22221 0.99287 0.96828 0.96881 0.92902 0.92620 0.92250 0.84357 0.96039 0.92050 0.89559 0.89173 0.90907 0.86607 0.90022 0.90387 0.92217 0.92017 0.91837 0.92254 0.91484 0.92206 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 7.90 37.16 0.29 -1.84 16 2 C 0.11 1.35 0.85 -130.48 -0.11 1.24 16 3 N -0.67 -10.62 5.93 -100.08 -0.59 -11.22 16 4 C 0.12 2.14 5.15 -4.97 -0.03 2.12 16 5 C -0.21 -4.61 5.41 -104.33 -0.56 -5.18 16 6 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 7 C -0.23 -5.73 9.80 -38.88 -0.38 -6.12 16 8 C 0.11 3.04 5.58 -106.83 -0.60 2.44 16 9 C -0.46 -12.52 9.05 -37.74 -0.34 -12.86 16 10 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 11 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 12 N -0.79 -20.75 10.95 55.55 0.61 -20.14 16 13 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 14 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 15 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 16 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 17 C -0.17 -4.35 8.70 -38.88 -0.34 -4.69 16 18 C -0.10 -2.24 9.67 -39.66 -0.38 -2.62 16 19 C -0.11 -1.36 4.81 -25.03 -0.12 -1.48 16 20 C -0.12 -1.25 6.91 -24.70 -0.17 -1.42 16 21 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 22 C -0.11 -1.31 6.20 -25.61 -0.16 -1.47 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 6.41 -51.93 -0.33 0.43 16 26 H 0.34 5.46 8.73 -39.30 -0.34 5.12 16 27 H 0.02 0.37 6.26 -51.93 -0.32 0.05 16 28 H 0.06 1.07 6.98 -51.93 -0.36 0.70 16 29 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 31 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 32 H 0.12 3.14 6.16 -52.48 -0.32 2.81 16 33 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.08 1.08 7.85 -51.92 -0.41 0.67 16 35 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 41 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -26.84 324.49 -10.33 -37.17 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.66 Total: 8.89 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: -3.54 Total: -33.40 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.02 Total: -31.36 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.84 -10.33 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -26.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds