Wall clock time and date at job start Mon Mar 30 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 110.02142 * 2 1 4 4 C 1.46909 * 110.99458 * 59.29976 * 3 2 1 5 5 C 1.50694 * 109.46791 * 180.02562 * 4 3 2 6 6 C 1.38643 * 119.75070 * 269.72397 * 5 4 3 7 7 C 1.37616 * 120.24675 * 179.72183 * 6 5 4 8 8 C 1.40709 * 119.74690 * 0.57272 * 7 6 5 9 9 C 1.41402 * 120.24502 * 179.68283 * 8 7 6 10 10 H 1.07998 * 119.99707 * 24.40538 * 9 8 7 11 11 C 1.39944 * 120.00026 * 204.41099 * 9 8 7 12 12 N 1.30821 * 119.99947 * 17.85336 * 11 9 8 13 13 Si 1.86801 * 119.99893 * 197.85208 * 11 9 8 14 14 H 1.48498 * 109.47267 * 60.00397 * 13 11 9 15 15 H 1.48502 * 109.46921 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47017 * 300.00066 * 13 11 9 17 17 C 1.40711 * 119.51343 * 359.70352 * 8 7 6 18 18 C 1.37616 * 119.74417 * 0.02562 * 17 8 7 19 19 C 1.54268 * 110.03108 * 121.39685 * 2 1 3 20 20 C 1.54959 * 104.16392 * 95.75322 * 19 2 1 21 21 C 1.54893 * 102.77668 * 37.88878 * 20 19 2 22 22 C 1.53874 * 110.03223 * 238.60943 * 2 1 3 23 23 H 1.09000 * 109.47133 * 60.69637 * 1 2 3 24 24 H 1.09000 * 109.47159 * 180.69723 * 1 2 3 25 25 H 1.09002 * 109.47019 * 300.70273 * 1 2 3 26 26 H 1.00891 * 110.99997 * 295.34911 * 3 2 1 27 27 H 1.09001 * 109.46992 * 299.99925 * 4 3 2 28 28 H 1.08997 * 109.47077 * 60.00386 * 4 3 2 29 29 H 1.08004 * 119.86997 * 359.97438 * 6 5 4 30 30 H 1.08004 * 120.12454 * 180.27941 * 7 6 5 31 31 H 0.96998 * 120.00127 * 179.97438 * 12 11 9 32 32 H 1.08004 * 120.13322 * 179.97438 * 17 8 7 33 33 H 1.08001 * 119.87626 * 180.02562 * 18 17 8 34 34 H 1.09010 * 110.48495 * 214.39985 * 19 2 1 35 35 H 1.09001 * 110.48392 * 337.03728 * 19 2 1 36 36 H 1.09000 * 110.71902 * 279.57278 * 20 19 2 37 37 H 1.09006 * 110.92348 * 156.29685 * 20 19 2 38 38 H 1.09002 * 110.48090 * 203.40679 * 21 20 19 39 39 H 1.09000 * 110.48680 * 80.76417 * 21 20 19 40 40 H 1.08998 * 110.03485 * 359.95090 * 22 2 1 41 41 H 1.08999 * 110.03114 * 121.33612 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0329 1.3802 0.0000 4 6 1.5552 2.1145 1.1793 5 6 2.0897 3.5230 1.1445 6 6 3.3037 3.8133 1.7479 7 6 3.8041 5.0949 1.7173 8 6 3.0730 6.1149 1.0809 9 6 3.5741 7.4367 1.0489 10 1 4.6355 7.6141 1.1393 11 6 2.6945 8.5151 0.9004 12 7 1.4180 8.3555 1.1382 13 14 3.3433 10.1822 0.3627 14 1 3.9856 10.0570 -0.9703 15 1 2.2183 11.1481 0.2807 16 1 4.3415 10.6667 1.3496 17 6 1.8393 5.8099 0.4767 18 6 1.3608 4.5201 0.5147 19 6 2.0584 -0.7551 1.2371 20 6 2.3298 -2.1898 0.7184 21 6 2.8885 -1.9396 -0.7044 22 6 2.0571 -0.7530 -1.2341 23 1 -0.3633 0.5030 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 1.7778 1.8580 -0.8512 27 1 0.4655 2.1396 1.1749 28 1 1.9035 1.6156 2.0836 29 1 3.8606 3.0298 2.2403 30 1 4.7522 5.3179 2.1841 31 1 0.8085 9.1030 1.0356 32 1 1.2696 6.5851 -0.0142 33 1 0.4144 4.2836 0.0514 34 1 2.9807 -0.2990 1.5973 35 1 1.3057 -0.7695 2.0255 36 1 1.4052 -2.7654 0.6747 37 1 3.0687 -2.6953 1.3402 38 1 2.7414 -2.8187 -1.3319 39 1 3.9448 -1.6750 -0.6584 40 1 1.2229 -1.1192 -1.8325 41 1 2.6853 -0.0940 -1.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399008211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:34 Heat of formation + Delta-G solvation = -17.376523 kcal Electronic energy + Delta-G solvation = -18955.063909 eV Core-core repulsion = 16218.518830 eV Total energy + Delta-G solvation = -2736.545079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30341 -39.24826 -36.12253 -34.88078 -32.17479 -31.15018 -30.05509 -29.67534 -27.80377 -25.97274 -24.52859 -22.87294 -21.93315 -21.16971 -19.71483 -19.20542 -17.26148 -16.91303 -16.53997 -15.95107 -15.80567 -15.50505 -15.02066 -14.72228 -14.47377 -14.28330 -13.94827 -13.79571 -13.36793 -13.28219 -13.00521 -12.83787 -12.57694 -12.34204 -12.31054 -11.96820 -11.91224 -11.80745 -11.72444 -11.42786 -11.33642 -11.29316 -11.23857 -10.98135 -9.38903 -9.24925 -9.08876 -8.63072 -6.32243 0.96536 1.16978 1.37498 1.48689 1.53695 2.20997 2.70704 3.41574 3.65998 3.81669 3.82740 4.12015 4.31172 4.35340 4.41690 4.46381 4.53201 4.63349 4.65818 4.66564 4.80573 4.84020 4.93940 5.00360 5.04046 5.11462 5.14756 5.16766 5.19950 5.27496 5.35873 5.39188 5.42335 5.49663 5.54954 5.72612 5.98424 6.11535 6.24805 6.35308 6.41686 6.61736 6.71783 6.95607 7.05824 8.33911 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.003764 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.009486 B = 7436.879087 C = 7584.737611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.679 5.679 4 C 0.132 3.868 5 C -0.198 4.198 6 C -0.074 4.074 7 C -0.245 4.245 8 C 0.079 3.921 9 C -0.505 4.505 10 H 0.073 0.927 11 C 0.036 3.964 12 N -0.827 5.827 13 Si 0.982 3.018 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.260 1.260 17 C -0.190 4.190 18 C -0.098 4.098 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.113 4.113 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.335 0.665 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.288 0.712 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -15.628 -3.055 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 N -0.309 5.309 4 C 0.004 3.996 5 C -0.200 4.200 6 C -0.093 4.093 7 C -0.265 4.265 8 C 0.077 3.923 9 C -0.535 4.535 10 H 0.091 0.909 11 C -0.179 4.179 12 N -0.453 5.453 13 Si 0.802 3.198 14 H -0.186 1.186 15 H -0.191 1.191 16 H -0.184 1.184 17 C -0.209 4.209 18 C -0.117 4.117 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.153 0.847 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.621 -15.678 -2.743 15.999 hybrid contribution -0.735 1.384 -0.281 1.593 sum -2.356 -14.294 -3.025 14.799 Atomic orbital electron populations 1.22526 0.96570 1.02698 1.01436 1.21744 0.92331 0.88431 0.96364 1.60911 1.63062 1.02179 1.04745 1.20446 0.95729 0.89629 0.93836 1.19377 0.97550 0.94837 1.08226 1.20629 0.95232 0.95014 0.98383 1.21171 1.02299 0.94667 1.08346 1.17949 0.92206 0.93362 0.88776 1.19818 0.95064 0.91617 1.46996 0.90884 1.26744 0.94496 1.04883 0.91745 1.69874 1.05206 1.35057 1.35133 0.85264 0.78941 0.75748 0.79811 1.18560 1.19071 1.18377 1.21247 0.99143 0.95603 1.04910 1.20761 0.98384 0.93089 0.99492 1.22458 1.00626 0.95759 0.96298 1.22464 1.01276 0.95553 0.96212 1.22286 0.99123 0.97617 0.96525 1.22219 0.99759 0.96923 0.96216 0.92954 0.90762 0.93181 0.84679 0.95281 0.91361 0.87208 0.88863 0.90186 0.88306 0.87977 0.92256 0.91887 0.90607 0.90971 0.90378 0.92337 0.90783 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 7.90 71.98 0.57 -3.15 16 2 C 0.10 2.40 0.85 4.25 0.00 2.40 16 3 N -0.68 -20.41 5.93 -470.56 -2.79 -23.20 16 4 C 0.13 4.44 5.15 85.55 0.44 4.88 16 5 C -0.20 -8.50 5.41 -19.67 -0.11 -8.61 16 6 C -0.07 -3.36 9.67 22.22 0.21 -3.14 16 7 C -0.25 -12.59 9.80 22.73 0.22 -12.36 16 8 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 9 C -0.51 -28.26 9.05 23.46 0.21 -28.05 16 10 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 11 C 0.04 1.86 5.14 85.26 0.44 2.30 16 12 N -0.83 -44.30 10.95 21.83 0.24 -44.06 16 13 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 14 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 15 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 18 C -0.10 -4.61 9.67 22.22 0.21 -4.39 16 19 C -0.11 -2.52 4.81 31.69 0.15 -2.37 16 20 C -0.12 -2.02 6.91 31.91 0.22 -1.80 16 21 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 22 C -0.11 -2.33 6.20 31.32 0.19 -2.13 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.16 6.41 -2.39 -0.02 1.15 16 26 H 0.34 10.40 8.73 -89.70 -0.78 9.61 16 27 H 0.03 0.95 6.26 -2.39 -0.01 0.93 16 28 H 0.07 2.23 6.98 -2.39 -0.02 2.21 16 29 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.29 13.92 8.30 -92.71 -0.77 13.16 16 32 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 33 H 0.10 4.27 8.06 -2.91 -0.02 4.24 16 34 H 0.06 1.54 7.85 -2.38 -0.02 1.53 16 35 H 0.06 1.35 7.84 -2.39 -0.02 1.33 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.31 7.67 -2.39 -0.02 1.30 16 41 H 0.06 1.40 7.91 -2.39 -0.02 1.38 16 Total: -1.00 -58.86 324.49 2.77 -56.09 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.22 Total: 34.06 kcal Atomic # 6 Polarization: -67.11 SS G_CDS: 3.07 Total: -64.04 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -2.55 Total: -67.26 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -58.86 2.77 -56.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -58.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds