Wall clock time and date at job start Mon Mar 30 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37876 * 119.39220 * 2 1 4 4 C 1.39381 * 119.21747 * 180.27389 * 3 2 1 5 5 N 1.38597 * 120.95085 * 179.73309 * 4 3 2 6 6 C 1.46902 * 111.00009 * 304.78941 * 5 4 3 7 7 C 1.50700 * 109.47665 * 187.65462 * 6 5 4 8 8 H 1.07999 * 119.99468 * 5.05848 * 7 6 5 9 9 C 1.37873 * 120.00169 * 185.06188 * 7 6 5 10 10 N 1.31506 * 120.00216 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99600 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47053 * 90.00219 * 11 9 7 13 13 H 1.48502 * 109.46888 * 209.99893 * 11 9 7 14 14 H 1.48492 * 109.47459 * 329.99807 * 11 9 7 15 15 C 1.46899 * 111.00129 * 68.74305 * 5 4 3 16 16 C 1.52998 * 109.46949 * 275.79044 * 15 5 4 17 17 C 1.53000 * 109.47249 * 35.79205 * 15 5 4 18 18 C 1.40944 * 118.09906 * 359.46306 * 4 3 2 19 19 C 1.43200 * 120.62917 * 180.25229 * 18 4 3 20 20 N 4.81812 * 134.65587 * 0.02562 * 3 1 2 21 21 C 1.39488 * 118.73473 * 0.26804 * 18 4 3 22 22 N 1.31708 * 120.62105 * 0.02562 * 21 18 4 23 23 H 1.08998 * 109.46691 * 270.27750 * 1 2 3 24 24 H 1.08996 * 109.46866 * 30.27922 * 1 2 3 25 25 H 1.09002 * 109.46532 * 150.27472 * 1 2 3 26 26 H 1.08005 * 120.38764 * 0.03043 * 3 2 1 27 27 H 1.09006 * 109.47164 * 307.65380 * 6 5 4 28 28 H 1.09001 * 109.47278 * 67.64886 * 6 5 4 29 29 H 0.97003 * 120.00440 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.46807 * 155.79414 * 15 5 4 31 31 H 1.09004 * 109.46802 * 186.65188 * 16 15 5 32 32 H 1.09002 * 109.47246 * 66.65612 * 16 15 5 33 33 H 1.09003 * 109.47262 * 306.64790 * 16 15 5 34 34 H 1.09004 * 109.46694 * 297.82692 * 17 15 5 35 35 H 1.09002 * 109.47092 * 57.82188 * 17 15 5 36 36 H 1.08997 * 109.47224 * 177.82500 * 17 15 5 37 37 H 1.08004 * 119.69415 * 180.02562 * 21 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2013 0.0000 4 6 3.5775 1.1970 -0.0058 5 7 4.2939 2.3835 -0.0116 6 6 3.8915 3.2360 -1.1382 7 6 4.8141 4.4245 -1.2236 8 1 5.6672 4.4942 -0.5649 9 6 4.5692 5.4228 -2.1424 10 7 3.5307 5.3377 -2.9447 11 14 5.7126 6.8963 -2.2477 12 1 6.7994 6.6111 -3.2186 13 1 4.9465 8.0861 -2.6977 14 1 6.3007 7.1630 -0.9105 15 6 4.1458 3.0941 1.2655 16 6 2.8610 3.9246 1.2410 17 6 4.0755 2.0796 2.4086 18 6 4.2376 -0.0483 0.0002 19 6 5.6680 -0.1158 0.0001 20 7 6.8028 -0.1694 -0.0015 21 6 3.4710 -1.2136 0.0058 22 7 2.1554 -1.1511 0.0051 23 1 -0.3632 0.0050 1.0277 24 1 -0.3633 0.8874 -0.5182 25 1 -0.3632 -0.8925 -0.5096 26 1 1.6401 2.1346 0.0005 27 1 3.9484 2.6646 -2.0647 28 1 2.8685 3.5804 -0.9860 29 1 3.3581 6.0402 -3.5910 30 1 5.0012 3.7527 1.4162 31 1 2.8103 4.5420 2.1378 32 1 1.9985 3.2588 1.2091 33 1 2.8589 4.5646 0.3586 34 1 3.1982 1.4459 2.2785 35 1 4.9738 1.4622 2.4022 36 1 4.0044 2.6078 3.3594 37 1 3.9607 -2.1762 0.0109 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399418235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:06 Heat of formation + Delta-G solvation = 73.572515 kcal Electronic energy + Delta-G solvation = -19587.596609 eV Core-core repulsion = 16751.455032 eV Total energy + Delta-G solvation = -2836.141576 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72893 -37.91511 -36.16371 -33.01358 -32.81357 -31.97496 -30.19562 -27.97977 -27.45301 -26.05432 -23.59883 -22.49242 -22.22193 -19.62518 -18.27590 -16.85190 -16.25924 -15.82525 -15.57024 -14.48483 -14.40386 -14.25657 -13.97834 -13.57960 -13.20811 -13.08666 -12.81161 -12.53938 -12.28371 -12.22663 -12.07915 -11.89370 -11.70279 -11.42443 -11.15052 -10.91039 -10.73677 -10.68255 -10.22043 -10.14338 -9.49863 -9.38310 -9.06786 -8.76819 -8.57800 -7.67333 -6.16558 -4.18747 0.81282 1.35144 3.10781 3.25485 3.27146 3.32237 3.35354 4.06373 4.16404 4.21760 4.42926 4.44362 4.86407 5.17771 5.19472 5.30906 5.40376 5.47884 5.53050 5.59327 5.72852 5.74695 5.89462 5.98511 6.02824 6.10362 6.22959 6.27282 6.37071 6.65655 6.69424 6.86437 7.09384 7.19363 7.65461 7.77345 7.87124 7.95623 8.04138 8.34337 8.87999 9.46268 10.93742 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.006947 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.820875 B = 4029.495169 C = 4456.300448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.211 4.211 4 C 0.226 3.774 5 N -0.514 5.514 6 C 0.193 3.807 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.100 3.900 16 C -0.192 4.192 17 C -0.158 4.158 18 C -0.090 4.090 19 C 0.281 3.719 20 N -0.424 5.424 21 C 0.157 3.843 22 N -0.499 5.499 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.028 0.972 28 H 0.020 0.980 29 H 0.263 0.737 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 -8.207 7.963 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.017 3.983 3 C -0.233 4.233 4 C 0.120 3.880 5 N -0.236 5.236 6 C 0.071 3.929 7 C -0.549 4.549 8 H 0.083 0.917 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.006 4.006 16 C -0.250 4.250 17 C -0.216 4.216 18 C -0.097 4.097 19 C -0.035 4.035 20 N -0.099 5.099 21 C -0.005 4.005 22 N -0.209 5.209 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.166 0.834 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.026 -9.017 7.756 12.912 hybrid contribution -0.099 1.951 -0.201 1.964 sum -5.125 -7.066 7.556 11.545 Atomic orbital electron populations 1.20771 0.88782 1.03745 1.03076 1.21310 0.97056 0.88046 0.91866 1.22916 0.95223 1.00189 1.04972 1.19331 0.89998 0.92030 0.86635 1.59964 1.54248 1.03730 1.05683 1.20020 0.96222 0.90856 0.85829 1.21027 1.11036 1.03450 1.19340 0.91746 1.24938 0.95461 0.98411 0.95398 1.69935 1.27586 1.34271 1.21564 0.86492 0.80650 0.81775 0.78531 1.20583 1.21205 1.19766 1.21500 0.98598 0.93997 0.86524 1.22683 0.97205 1.01151 1.03952 1.22147 1.01577 0.99449 0.98434 1.17164 0.86190 0.94599 1.11702 1.24999 0.92001 0.92980 0.93541 1.81138 1.11764 1.08121 1.08905 1.22721 0.88934 0.96660 0.92173 1.67557 1.09036 1.28843 1.15424 0.90286 0.90387 0.90326 0.83448 0.95445 0.96257 0.92715 0.89078 0.93100 0.93448 0.88483 0.92944 0.92569 0.92168 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.16 36.01 0.37 -0.71 16 2 C 0.15 2.08 6.77 -82.60 -0.56 1.52 16 3 C -0.21 -3.25 6.96 -39.29 -0.27 -3.52 16 4 C 0.23 3.93 2.89 -83.35 -0.24 3.69 16 5 N -0.51 -10.32 4.15 -164.46 -0.68 -11.00 16 6 C 0.19 4.59 3.76 -4.97 -0.02 4.58 16 7 C -0.51 -13.40 7.85 -34.44 -0.27 -13.67 16 8 H 0.06 1.72 7.27 -52.49 -0.38 1.34 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 11 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.10 1.77 2.77 -67.71 -0.19 1.59 16 16 C -0.19 -3.24 7.89 37.16 0.29 -2.95 16 17 C -0.16 -2.35 8.34 37.16 0.31 -2.04 16 18 C -0.09 -1.44 5.66 -106.48 -0.60 -2.04 16 19 C 0.28 4.98 14.93 -22.47 -0.34 4.64 16 20 N -0.42 -8.21 18.54 41.84 0.78 -7.44 16 21 C 0.16 2.12 10.92 -17.14 -0.19 1.93 16 22 N -0.50 -6.94 10.25 -9.22 -0.09 -7.04 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.15 2.27 5.14 -52.48 -0.27 2.00 16 27 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.02 0.47 5.04 -51.93 -0.26 0.21 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.09 1.76 7.54 -51.93 -0.39 1.37 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.72 5.39 -51.93 -0.28 0.44 16 33 H 0.10 1.99 5.29 -51.93 -0.27 1.71 16 34 H 0.05 0.75 6.29 -51.93 -0.33 0.42 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -28.98 306.65 -6.17 -35.15 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.70 Total: -0.53 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.80 Total: -5.47 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.74 Total: -49.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.98 -6.17 -35.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399418235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.723 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds