Wall clock time and date at job start Mon Mar 30 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37876 * 119.39220 * 2 1 4 4 C 1.39381 * 119.21747 * 180.27389 * 3 2 1 5 5 N 1.38597 * 120.95085 * 179.73309 * 4 3 2 6 6 C 1.46902 * 111.00009 * 304.78941 * 5 4 3 7 7 C 1.50700 * 109.47665 * 187.65462 * 6 5 4 8 8 H 1.07999 * 119.99468 * 5.05848 * 7 6 5 9 9 C 1.37873 * 120.00169 * 185.06188 * 7 6 5 10 10 N 1.31506 * 120.00216 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99600 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47053 * 90.00219 * 11 9 7 13 13 H 1.48502 * 109.46888 * 209.99893 * 11 9 7 14 14 H 1.48492 * 109.47459 * 329.99807 * 11 9 7 15 15 C 1.46899 * 111.00129 * 68.74305 * 5 4 3 16 16 C 1.52998 * 109.46949 * 275.79044 * 15 5 4 17 17 C 1.53000 * 109.47249 * 35.79205 * 15 5 4 18 18 C 1.40944 * 118.09906 * 359.46306 * 4 3 2 19 19 C 1.43200 * 120.62917 * 180.25229 * 18 4 3 20 20 N 4.81812 * 134.65587 * 0.02562 * 3 1 2 21 21 C 1.39488 * 118.73473 * 0.26804 * 18 4 3 22 22 N 1.31708 * 120.62105 * 0.02562 * 21 18 4 23 23 H 1.08998 * 109.46691 * 270.27750 * 1 2 3 24 24 H 1.08996 * 109.46866 * 30.27922 * 1 2 3 25 25 H 1.09002 * 109.46532 * 150.27472 * 1 2 3 26 26 H 1.08005 * 120.38764 * 0.03043 * 3 2 1 27 27 H 1.09006 * 109.47164 * 307.65380 * 6 5 4 28 28 H 1.09001 * 109.47278 * 67.64886 * 6 5 4 29 29 H 0.97003 * 120.00440 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.46807 * 155.79414 * 15 5 4 31 31 H 1.09004 * 109.46802 * 186.65188 * 16 15 5 32 32 H 1.09002 * 109.47246 * 66.65612 * 16 15 5 33 33 H 1.09003 * 109.47262 * 306.64790 * 16 15 5 34 34 H 1.09004 * 109.46694 * 297.82692 * 17 15 5 35 35 H 1.09002 * 109.47092 * 57.82188 * 17 15 5 36 36 H 1.08997 * 109.47224 * 177.82500 * 17 15 5 37 37 H 1.08004 * 119.69415 * 180.02562 * 21 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2013 0.0000 4 6 3.5775 1.1970 -0.0058 5 7 4.2939 2.3835 -0.0116 6 6 3.8915 3.2360 -1.1382 7 6 4.8141 4.4245 -1.2236 8 1 5.6672 4.4942 -0.5649 9 6 4.5692 5.4228 -2.1424 10 7 3.5307 5.3377 -2.9447 11 14 5.7126 6.8963 -2.2477 12 1 6.7994 6.6111 -3.2186 13 1 4.9465 8.0861 -2.6977 14 1 6.3007 7.1630 -0.9105 15 6 4.1458 3.0941 1.2655 16 6 2.8610 3.9246 1.2410 17 6 4.0755 2.0796 2.4086 18 6 4.2376 -0.0483 0.0002 19 6 5.6680 -0.1158 0.0001 20 7 6.8028 -0.1694 -0.0015 21 6 3.4710 -1.2136 0.0058 22 7 2.1554 -1.1511 0.0051 23 1 -0.3632 0.0050 1.0277 24 1 -0.3633 0.8874 -0.5182 25 1 -0.3632 -0.8925 -0.5096 26 1 1.6401 2.1346 0.0005 27 1 3.9484 2.6646 -2.0647 28 1 2.8685 3.5804 -0.9860 29 1 3.3581 6.0402 -3.5910 30 1 5.0012 3.7527 1.4162 31 1 2.8103 4.5420 2.1378 32 1 1.9985 3.2588 1.2091 33 1 2.8589 4.5646 0.3586 34 1 3.1982 1.4459 2.2785 35 1 4.9738 1.4622 2.4022 36 1 4.0044 2.6078 3.3594 37 1 3.9607 -2.1762 0.0109 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399418235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:05 Heat of formation + Delta-G solvation = 56.119496 kcal Electronic energy + Delta-G solvation = -19588.353428 eV Core-core repulsion = 16751.455032 eV Total energy + Delta-G solvation = -2836.898396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00266 -39.28768 -37.57937 -34.95410 -34.01275 -33.23062 -31.75631 -29.15673 -28.85708 -27.66593 -24.87969 -24.17745 -23.51852 -21.04106 -19.55923 -18.44030 -17.86458 -17.18905 -17.15611 -16.17799 -15.66918 -15.52742 -15.26719 -14.96557 -14.66803 -14.47383 -14.16275 -14.06565 -13.83840 -13.20263 -13.10566 -13.05339 -12.97198 -12.91548 -12.83718 -12.73351 -12.38432 -12.23990 -11.89709 -11.67785 -11.38697 -10.68264 -10.57859 -10.38929 -9.92400 -9.25953 -8.23326 -6.31525 -0.38978 0.13234 1.38150 1.40144 1.49726 1.71161 1.98386 2.36654 2.81187 2.88465 2.94633 3.10579 3.37402 3.77879 3.91709 4.09667 4.11493 4.22410 4.40231 4.50898 4.63455 4.72506 4.78143 4.84713 4.86984 4.93955 5.02698 5.07063 5.14108 5.16687 5.26921 5.38284 5.53848 5.60114 5.67162 6.02554 6.11084 6.49934 6.65603 6.80840 6.88408 7.37180 8.86856 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.006947 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.820875 B = 4029.495169 C = 4456.300448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.219 4.219 4 C 0.206 3.794 5 N -0.528 5.528 6 C 0.215 3.785 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.015 3.985 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.281 1.281 13 H -0.278 1.278 14 H -0.267 1.267 15 C 0.096 3.904 16 C -0.181 4.181 17 C -0.144 4.144 18 C -0.106 4.106 19 C 0.295 3.705 20 N -0.462 5.462 21 C 0.177 3.823 22 N -0.500 5.500 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.145 0.855 27 H -0.010 1.010 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -9.109 9.182 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.029 3.971 3 C -0.241 4.241 4 C 0.100 3.900 5 N -0.249 5.249 6 C 0.091 3.909 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.782 3.218 12 H -0.207 1.207 13 H -0.203 1.203 14 H -0.192 1.192 15 C -0.010 4.010 16 C -0.239 4.239 17 C -0.202 4.202 18 C -0.113 4.113 19 C -0.020 4.020 20 N -0.138 5.138 21 C 0.015 3.985 22 N -0.209 5.209 23 H 0.120 0.880 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.163 0.837 27 H 0.008 0.992 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.296 -9.930 8.993 14.802 hybrid contribution 0.226 2.159 -0.566 2.243 sum -6.070 -7.771 8.426 12.971 Atomic orbital electron populations 1.20906 0.86001 1.04652 1.04750 1.21834 0.98792 0.87134 0.89311 1.22859 0.94232 1.01015 1.05974 1.19390 0.90967 0.91199 0.88402 1.59716 1.55392 1.04306 1.05520 1.19556 0.95445 0.90025 0.85887 1.21257 1.11009 1.04551 1.19003 0.92805 1.25666 0.96779 1.00913 0.95114 1.70028 1.28968 1.35171 1.22180 0.85574 0.78772 0.78915 0.78533 1.20736 1.20348 1.19154 1.21543 0.98088 0.94657 0.86702 1.22524 0.97451 1.00915 1.03002 1.22012 1.01481 0.98666 0.97994 1.17262 0.85375 0.95083 1.13552 1.25286 0.92325 0.91936 0.92419 1.81138 1.12808 1.09298 1.10552 1.23229 0.88722 0.97016 0.89551 1.67746 1.08985 1.28665 1.15553 0.88021 0.89669 0.89256 0.83732 0.99200 0.96777 0.92585 0.91454 0.90982 0.91666 0.92436 0.92063 0.93499 0.89773 0.78612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.16 71.24 0.72 -1.06 16 2 C 0.17 4.06 6.77 42.43 0.29 4.35 16 3 C -0.22 -6.47 6.96 22.46 0.16 -6.32 16 4 C 0.21 7.09 2.89 39.01 0.11 7.21 16 5 N -0.53 -21.62 4.15 -674.23 -2.80 -24.42 16 6 C 0.21 10.61 3.76 85.56 0.32 10.93 16 7 C -0.52 -28.21 7.85 25.60 0.20 -28.01 16 8 H 0.05 2.97 7.27 -2.91 -0.02 2.95 16 9 C 0.01 0.80 5.46 84.65 0.46 1.26 16 10 N -0.92 -52.63 13.29 21.44 0.28 -52.35 16 11 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.10 3.42 2.77 44.92 0.12 3.54 16 16 C -0.18 -6.04 7.89 71.98 0.57 -5.48 16 17 C -0.14 -4.05 8.34 71.98 0.60 -3.45 16 18 C -0.11 -3.29 5.66 -21.07 -0.12 -3.41 16 19 C 0.30 10.44 14.93 88.33 1.32 11.76 16 20 N -0.46 -18.06 18.54 19.00 0.35 -17.70 16 21 C 0.18 4.31 10.92 85.01 0.93 5.23 16 22 N -0.50 -12.39 10.25 -183.07 -1.88 -14.27 16 23 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.35 8.07 -2.39 -0.02 1.33 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.15 4.33 5.14 -2.91 -0.01 4.31 16 27 H -0.01 -0.56 8.08 -2.38 -0.02 -0.58 16 28 H 0.01 0.73 5.04 -2.39 -0.01 0.72 16 29 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.07 2.68 7.54 -2.38 -0.02 2.66 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.91 5.39 -2.39 -0.01 1.90 16 33 H 0.06 2.40 5.29 -2.39 -0.01 2.39 16 34 H 0.06 1.61 6.29 -2.38 -0.01 1.60 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.20 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -63.96 306.65 4.76 -59.20 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.08 Total: 7.45 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.69 Total: -3.45 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -4.04 Total: -108.74 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.96 4.76 -59.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399418235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.318 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds