Wall clock time and date at job start Mon Mar 30 2020 07:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48502 * 109.47665 * 270.00241 * 3 2 1 5 5 H 1.48508 * 109.46831 * 30.00483 * 3 2 1 6 6 H 1.48501 * 109.47392 * 149.99745 * 3 2 1 7 7 C 1.37874 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47331 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47278 * 179.97438 * 10 9 7 12 12 C 1.39676 * 120.00386 * 179.97438 * 11 10 9 13 13 C 1.38932 * 120.04883 * 0.02562 * 12 11 10 14 14 C 1.38150 * 119.98008 * 180.02562 * 13 12 11 15 15 C 1.38475 * 119.72124 * 359.97438 * 14 13 12 16 16 C 1.37105 * 120.43354 * 359.96626 * 15 14 13 17 17 C 1.38266 * 120.40556 * 0.04060 * 16 15 14 18 18 C 1.51477 * 120.12441 * 179.97438 * 16 15 14 19 19 C 1.53067 * 108.46996 * 70.69769 * 18 16 15 20 20 C 1.51590 * 110.94985 * 274.38758 * 19 18 16 21 21 C 1.51589 * 114.42279 * 68.12838 * 20 19 18 22 22 C 1.51477 * 119.42964 * 179.91774 * 15 14 13 23 23 H 0.96995 * 120.00144 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47197 * 59.99503 * 9 7 2 25 25 H 1.09001 * 109.46337 * 300.00202 * 9 7 2 26 26 H 1.09004 * 109.47310 * 59.99854 * 10 9 7 27 27 H 1.09005 * 109.47247 * 299.99851 * 10 9 7 28 28 H 0.97002 * 120.00073 * 359.97438 * 11 10 9 29 29 H 1.07995 * 120.01398 * 0.02757 * 13 12 11 30 30 H 1.08003 * 120.14046 * 180.26616 * 14 13 12 31 31 H 1.07998 * 120.21614 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.63809 * 190.38636 * 18 16 15 33 33 H 1.09005 * 109.64388 * 311.00533 * 18 16 15 34 34 H 1.09004 * 109.17704 * 34.75820 * 19 18 16 35 35 H 1.09000 * 109.18634 * 153.99821 * 19 18 16 36 36 H 1.09005 * 108.49292 * 189.41545 * 20 19 18 37 37 H 1.08998 * 108.48669 * 306.85030 * 20 19 18 38 38 H 1.08997 * 109.18312 * 52.25441 * 21 20 19 39 39 H 1.09008 * 109.17918 * 171.54994 * 21 20 19 40 40 H 1.09001 * 109.63902 * 229.02584 * 22 15 14 41 41 H 1.09003 * 109.63693 * 349.63639 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5131 -4.9308 -0.0020 12 6 2.2115 -6.1404 -0.0024 13 6 3.6008 -6.1415 -0.0018 14 6 4.2901 -7.3388 -0.0028 15 6 3.5905 -8.5338 -0.0038 16 6 2.2195 -8.5359 -0.0031 17 6 1.5179 -7.3444 -0.0023 18 6 1.4612 -9.8472 -0.0049 19 6 1.6346 -10.5094 1.3642 20 6 2.9103 -11.3268 1.4134 21 6 4.1833 -10.5053 1.3632 22 6 4.3530 -9.8426 -0.0067 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5564 -0.8919 25 1 0.6242 -2.5574 0.8880 26 1 2.8715 -3.6046 0.8890 27 1 2.8728 -3.6039 -0.8910 28 1 0.5430 -4.9309 -0.0020 29 1 4.1418 -5.2069 -0.0005 30 1 5.3701 -7.3427 0.0021 31 1 0.4379 -7.3497 -0.0014 32 1 0.4036 -9.6586 -0.1892 33 1 1.8606 -10.5004 -0.7808 34 1 1.6740 -9.7375 2.1329 35 1 0.7832 -11.1622 1.5568 36 1 2.9115 -11.9107 2.3338 37 1 2.9109 -12.0174 0.5701 38 1 4.1422 -9.7338 2.1319 39 1 5.0370 -11.1558 1.5539 40 1 3.9548 -10.4968 -0.7823 41 1 5.4098 -9.6505 -0.1924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404501120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:28 Heat of formation + Delta-G solvation = -11.970821 kcal Electronic energy + Delta-G solvation = -18631.017256 eV Core-core repulsion = 15894.706586 eV Total energy + Delta-G solvation = -2736.310670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90249 -37.22843 -34.95385 -33.13194 -32.78372 -30.71311 -29.88462 -28.08319 -25.23226 -24.70081 -23.14506 -22.29734 -20.87766 -20.35565 -19.31924 -16.93144 -16.23335 -15.96769 -15.19133 -14.63599 -14.59761 -14.31625 -14.12331 -13.78482 -13.60537 -13.10158 -12.90657 -12.89113 -12.39504 -12.20735 -11.96307 -11.69857 -11.20118 -11.09690 -10.88712 -10.80164 -10.67294 -10.62797 -10.56891 -10.32348 -10.31614 -9.59308 -9.30563 -9.26309 -8.46010 -8.40672 -6.83630 -6.10570 -4.13976 1.74448 1.97275 3.27469 3.33713 3.36991 4.05645 4.16572 4.41927 4.61615 4.78914 4.81596 5.04797 5.17689 5.23114 5.26277 5.32771 5.42660 5.54814 5.60784 5.73857 5.74939 5.76587 5.92036 6.01404 6.02564 6.09053 6.14562 6.18041 6.26484 6.29735 6.32595 6.43081 6.69961 6.76354 6.79569 7.05174 7.24617 7.48585 7.62302 7.80427 7.97118 8.19729 8.37347 8.92014 9.50871 11.01111 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046808 B = 0.003335 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.043654 B = 8393.101348 C = 8783.069060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.126 3.874 11 N -0.741 5.741 12 C 0.227 3.773 13 C -0.203 4.203 14 C -0.067 4.067 15 C -0.156 4.156 16 C -0.032 4.032 17 C -0.206 4.206 18 C -0.078 4.078 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.067 4.067 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.396 0.604 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 -21.307 1.127 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.003 3.997 11 N -0.367 5.367 12 C 0.120 3.880 13 C -0.226 4.226 14 C -0.086 4.086 15 C -0.159 4.159 16 C -0.033 4.033 17 C -0.229 4.229 18 C -0.116 4.116 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.104 4.104 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.230 0.770 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.418 -20.972 1.141 21.691 hybrid contribution 0.000 1.148 0.003 1.148 sum 5.419 -19.824 1.144 20.583 Atomic orbital electron populations 1.69957 1.06118 1.26884 1.50257 1.25007 0.94890 0.99431 0.94995 0.86518 0.79811 0.83050 0.78193 1.20549 1.21139 1.19742 1.21046 0.93126 0.90473 1.51482 0.92352 1.19273 0.94267 0.91059 0.97808 1.21662 0.96259 0.82412 0.99379 1.45225 1.08376 1.03218 1.79846 1.17988 0.91630 0.86335 0.92025 1.20685 0.92450 0.98504 1.10940 1.20788 0.98738 0.91488 0.97575 1.19194 0.92969 0.94444 1.09252 1.19198 0.92918 0.93863 0.97305 1.20477 0.98907 0.90703 1.12836 1.20781 0.99362 0.93967 0.97465 1.21238 0.97195 0.99226 0.97376 1.21030 0.94600 0.98189 1.01489 1.21294 0.96962 0.99129 0.97834 1.20611 0.98937 0.94002 0.96884 0.92819 0.96037 0.96032 0.93422 0.93410 0.76977 0.86196 0.86745 0.86698 0.91413 0.91025 0.91720 0.92056 0.92713 0.92557 0.91807 0.92319 0.91650 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.13 2.62 4.85 -4.05 -0.02 2.60 16 11 N -0.74 -13.53 5.73 -58.62 -0.34 -13.87 16 12 C 0.23 3.84 6.65 -83.76 -0.56 3.28 16 13 C -0.20 -3.30 9.31 -39.36 -0.37 -3.66 16 14 C -0.07 -0.94 9.68 -39.53 -0.38 -1.33 16 15 C -0.16 -2.05 4.99 -104.56 -0.52 -2.57 16 16 C -0.03 -0.43 4.98 -104.64 -0.52 -0.95 16 17 C -0.21 -3.10 9.53 -39.31 -0.37 -3.47 16 18 C -0.08 -0.83 5.46 -27.47 -0.15 -0.98 16 19 C -0.11 -1.07 5.65 -27.41 -0.15 -1.23 16 20 C -0.12 -0.99 5.22 -28.16 -0.15 -1.14 16 21 C -0.11 -1.07 5.65 -27.38 -0.15 -1.22 16 22 C -0.07 -0.69 5.46 -27.44 -0.15 -0.84 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 27 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 28 H 0.40 6.89 8.49 -40.82 -0.35 6.54 16 29 H 0.12 1.97 6.73 -52.49 -0.35 1.62 16 30 H 0.11 1.36 7.97 -52.48 -0.42 0.95 16 31 H 0.11 1.58 7.97 -52.49 -0.42 1.16 16 32 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 33 H 0.07 0.70 6.90 -51.93 -0.36 0.34 16 34 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.44 7.83 -51.93 -0.41 0.04 16 38 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.06 0.63 6.90 -51.93 -0.36 0.28 16 41 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -29.13 323.92 -10.57 -39.70 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.78 Total: 3.20 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -4.05 Total: -24.57 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.40 Total: -39.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.13 -10.57 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404501120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.724 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds