Wall clock time and date at job start Mon Mar 30 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48502 * 109.47665 * 270.00241 * 3 2 1 5 5 H 1.48508 * 109.46831 * 30.00483 * 3 2 1 6 6 H 1.48501 * 109.47392 * 149.99745 * 3 2 1 7 7 C 1.37874 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47331 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47278 * 179.97438 * 10 9 7 12 12 C 1.39676 * 120.00386 * 179.97438 * 11 10 9 13 13 C 1.38932 * 120.04883 * 0.02562 * 12 11 10 14 14 C 1.38150 * 119.98008 * 180.02562 * 13 12 11 15 15 C 1.38475 * 119.72124 * 359.97438 * 14 13 12 16 16 C 1.37105 * 120.43354 * 359.96626 * 15 14 13 17 17 C 1.38266 * 120.40556 * 0.04060 * 16 15 14 18 18 C 1.51477 * 120.12441 * 179.97438 * 16 15 14 19 19 C 1.53067 * 108.46996 * 70.69769 * 18 16 15 20 20 C 1.51590 * 110.94985 * 274.38758 * 19 18 16 21 21 C 1.51589 * 114.42279 * 68.12838 * 20 19 18 22 22 C 1.51477 * 119.42964 * 179.91774 * 15 14 13 23 23 H 0.96995 * 120.00144 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47197 * 59.99503 * 9 7 2 25 25 H 1.09001 * 109.46337 * 300.00202 * 9 7 2 26 26 H 1.09004 * 109.47310 * 59.99854 * 10 9 7 27 27 H 1.09005 * 109.47247 * 299.99851 * 10 9 7 28 28 H 0.97002 * 120.00073 * 359.97438 * 11 10 9 29 29 H 1.07995 * 120.01398 * 0.02757 * 13 12 11 30 30 H 1.08003 * 120.14046 * 180.26616 * 14 13 12 31 31 H 1.07998 * 120.21614 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.63809 * 190.38636 * 18 16 15 33 33 H 1.09005 * 109.64388 * 311.00533 * 18 16 15 34 34 H 1.09004 * 109.17704 * 34.75820 * 19 18 16 35 35 H 1.09000 * 109.18634 * 153.99821 * 19 18 16 36 36 H 1.09005 * 108.49292 * 189.41545 * 20 19 18 37 37 H 1.08998 * 108.48669 * 306.85030 * 20 19 18 38 38 H 1.08997 * 109.18312 * 52.25441 * 21 20 19 39 39 H 1.09008 * 109.17918 * 171.54994 * 21 20 19 40 40 H 1.09001 * 109.63902 * 229.02584 * 22 15 14 41 41 H 1.09003 * 109.63693 * 349.63639 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5131 -4.9308 -0.0020 12 6 2.2115 -6.1404 -0.0024 13 6 3.6008 -6.1415 -0.0018 14 6 4.2901 -7.3388 -0.0028 15 6 3.5905 -8.5338 -0.0038 16 6 2.2195 -8.5359 -0.0031 17 6 1.5179 -7.3444 -0.0023 18 6 1.4612 -9.8472 -0.0049 19 6 1.6346 -10.5094 1.3642 20 6 2.9103 -11.3268 1.4134 21 6 4.1833 -10.5053 1.3632 22 6 4.3530 -9.8426 -0.0067 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5564 -0.8919 25 1 0.6242 -2.5574 0.8880 26 1 2.8715 -3.6046 0.8890 27 1 2.8728 -3.6039 -0.8910 28 1 0.5430 -4.9309 -0.0020 29 1 4.1418 -5.2069 -0.0005 30 1 5.3701 -7.3427 0.0021 31 1 0.4379 -7.3497 -0.0014 32 1 0.4036 -9.6586 -0.1892 33 1 1.8606 -10.5004 -0.7808 34 1 1.6740 -9.7375 2.1329 35 1 0.7832 -11.1622 1.5568 36 1 2.9115 -11.9107 2.3338 37 1 2.9109 -12.0174 0.5701 38 1 4.1422 -9.7338 2.1319 39 1 5.0370 -11.1558 1.5539 40 1 3.9548 -10.4968 -0.7823 41 1 5.4098 -9.6505 -0.1924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404501120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:27 Heat of formation + Delta-G solvation = -26.335244 kcal Electronic energy + Delta-G solvation = -18631.640144 eV Core-core repulsion = 15894.706586 eV Total energy + Delta-G solvation = -2736.933558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97108 -38.38314 -36.33445 -34.91664 -33.82124 -32.20999 -31.04521 -29.48549 -26.60712 -26.05487 -24.32777 -23.50538 -22.51652 -21.10729 -20.48621 -18.67643 -17.82992 -17.10846 -16.48530 -16.22045 -15.84803 -15.66562 -15.41598 -14.79161 -14.60694 -14.38631 -14.05765 -14.00046 -13.72520 -13.48475 -13.31673 -13.05845 -12.82398 -12.52945 -12.49048 -12.25232 -11.80594 -11.58323 -11.52871 -11.45149 -11.42992 -11.35577 -11.20929 -10.67337 -10.49524 -9.54840 -8.26576 -8.15100 -6.38258 0.58860 0.80544 1.39724 1.40953 1.52278 2.35410 2.68821 3.00796 3.08038 3.79454 3.95722 4.08143 4.17483 4.22461 4.28071 4.41175 4.46616 4.49922 4.52196 4.61482 4.74558 4.80507 4.83666 4.86216 5.00767 5.03693 5.13469 5.17649 5.32061 5.36410 5.36990 5.39050 5.42000 5.53394 5.55233 5.57681 5.68055 5.72634 5.95717 6.08450 6.15733 6.52822 6.76205 6.92877 7.31756 8.85880 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046808 B = 0.003335 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.043654 B = 8393.101348 C = 8783.069060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.022 3.978 10 C 0.150 3.850 11 N -0.748 5.748 12 C 0.200 3.800 13 C -0.222 4.222 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.036 4.036 17 C -0.212 4.212 18 C -0.077 4.077 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.066 4.066 23 H 0.265 0.735 24 H -0.001 1.001 25 H -0.001 1.001 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.397 0.603 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -23.210 1.063 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.015 4.015 10 C 0.026 3.974 11 N -0.376 5.376 12 C 0.096 3.904 13 C -0.245 4.245 14 C -0.090 4.090 15 C -0.154 4.154 16 C -0.037 4.037 17 C -0.235 4.235 18 C -0.114 4.114 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.103 4.103 23 H 0.074 0.926 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.231 0.769 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.857 -22.920 1.078 23.948 hybrid contribution -0.439 1.601 0.027 1.660 sum 6.418 -21.319 1.105 22.292 Atomic orbital electron populations 1.70085 1.07829 1.28037 1.51096 1.25971 0.95799 1.03458 0.94365 0.85381 0.78649 0.78056 0.78577 1.19674 1.20665 1.18613 1.21494 0.93715 0.91725 1.51436 0.91756 1.19095 0.94441 0.92486 0.95521 1.21163 0.94893 0.82279 0.99093 1.44972 1.08261 1.02895 1.81521 1.18204 0.92100 0.86189 0.93893 1.20797 0.92394 0.99185 1.12106 1.21085 0.99943 0.91063 0.96940 1.19642 0.93202 0.95598 1.06955 1.19604 0.93465 0.94599 0.96047 1.20689 0.99495 0.90717 1.12583 1.20853 0.99327 0.92583 0.98623 1.21231 0.98647 0.99029 0.95928 1.21043 0.93515 0.98107 1.02711 1.21281 0.98271 0.98991 0.96495 1.20698 0.99229 0.92466 0.97923 0.92577 0.98276 0.98295 0.93714 0.93637 0.76872 0.87145 0.84592 0.85987 0.90955 0.89557 0.93655 0.90383 0.91656 0.91141 0.93605 0.90430 0.90405 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.15 6.49 4.85 86.38 0.42 6.91 16 11 N -0.75 -28.51 5.73 -339.37 -1.95 -30.45 16 12 C 0.20 6.93 6.65 38.23 0.25 7.18 16 13 C -0.22 -7.31 9.31 22.42 0.21 -7.10 16 14 C -0.07 -1.95 9.68 22.31 0.22 -1.73 16 15 C -0.15 -3.71 4.99 -19.83 -0.10 -3.81 16 16 C -0.04 -0.93 4.98 -19.88 -0.10 -1.03 16 17 C -0.21 -6.35 9.53 22.45 0.21 -6.14 16 18 C -0.08 -1.43 5.46 30.12 0.16 -1.27 16 19 C -0.11 -1.83 5.65 30.15 0.17 -1.66 16 20 C -0.12 -1.61 5.22 29.67 0.15 -1.46 16 21 C -0.11 -1.77 5.65 30.17 0.17 -1.60 16 22 C -0.07 -1.15 5.46 30.13 0.16 -0.99 16 23 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.04 1.94 7.95 -2.39 -0.02 1.92 16 27 H 0.05 1.96 7.95 -2.38 -0.02 1.94 16 28 H 0.40 14.57 8.49 -92.71 -0.79 13.78 16 29 H 0.11 3.74 6.73 -2.91 -0.02 3.72 16 30 H 0.14 3.00 7.97 -2.91 -0.02 2.98 16 31 H 0.12 3.37 7.97 -2.91 -0.02 3.35 16 32 H 0.07 1.29 7.91 -2.39 -0.02 1.27 16 33 H 0.09 1.39 6.90 -2.38 -0.02 1.37 16 34 H 0.04 0.93 7.85 -2.38 -0.02 0.91 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.07 0.81 7.83 -2.39 -0.02 0.79 16 38 H 0.05 0.89 7.85 -2.39 -0.02 0.87 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.08 1.21 6.90 -2.39 -0.02 1.19 16 41 H 0.07 1.16 7.91 -2.39 -0.02 1.14 16 Total: -1.00 -63.27 323.92 3.36 -59.91 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.21 Total: 21.95 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 2.79 Total: -41.44 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.66 Total: -86.37 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.27 3.36 -59.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404501120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.574 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds