Wall clock time and date at job start Mon Mar 30 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47339 * 269.99798 * 3 2 1 5 5 H 1.48498 * 109.47200 * 30.00091 * 3 2 1 6 6 H 1.48507 * 109.46980 * 149.99745 * 3 2 1 7 7 C 1.37875 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99959 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47030 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47057 * 180.02562 * 11 10 9 13 13 C 1.39681 * 119.99965 * 179.97438 * 12 11 10 14 14 C 1.38940 * 120.19098 * 0.02562 * 13 12 11 15 15 C 1.37792 * 119.69382 * 180.12425 * 14 13 12 16 16 C 1.38987 * 120.64799 * 0.03262 * 15 14 13 17 17 C 1.37735 * 119.79687 * 359.40647 * 16 15 14 18 18 C 1.38604 * 120.19581 * 180.02562 * 13 12 11 19 19 C 1.50642 * 122.55916 * 181.01472 * 17 16 15 20 20 C 1.52726 * 110.58430 * 342.18641 * 19 17 16 21 21 C 1.53313 * 108.38547 * 51.20234 * 20 19 17 22 22 C 1.50659 * 117.67921 * 179.31821 * 16 15 14 23 23 H 0.96997 * 120.00475 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47028 * 60.00489 * 9 7 2 25 25 H 1.08995 * 109.47436 * 300.00201 * 9 7 2 26 26 H 1.08996 * 109.46774 * 60.00468 * 10 9 7 27 27 H 1.08995 * 109.47353 * 300.00386 * 10 9 7 28 28 H 1.09002 * 109.46907 * 59.99818 * 11 10 9 29 29 H 1.09009 * 109.47338 * 300.00388 * 11 10 9 30 30 H 0.96999 * 120.00231 * 0.02562 * 12 11 10 31 31 H 1.07996 * 120.15696 * 0.09758 * 14 13 12 32 32 H 1.07995 * 119.68127 * 180.02562 * 15 14 13 33 33 H 1.08002 * 119.75262 * 359.97333 * 18 13 12 34 34 H 1.08998 * 109.25867 * 102.47513 * 19 17 16 35 35 H 1.09010 * 109.25291 * 221.90121 * 19 17 16 36 36 H 1.09008 * 109.68023 * 170.93033 * 20 19 17 37 37 H 1.09000 * 109.67983 * 291.47806 * 20 19 17 38 38 H 1.09007 * 109.67573 * 49.89593 * 21 20 19 39 39 H 1.08996 * 109.67749 * 170.39831 * 21 20 19 40 40 H 1.08997 * 109.25014 * 282.64103 * 22 16 15 41 41 H 1.08999 * 109.24771 * 42.06638 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0035 12 7 6.0399 -4.0177 0.0040 13 6 7.4132 -4.2729 0.0046 14 6 8.3196 -3.2198 0.0053 15 6 9.6721 -3.4834 0.0032 16 6 10.1388 -4.7925 -0.0001 17 6 9.2429 -5.8386 0.0109 18 6 7.8797 -5.5781 0.0045 19 6 9.6799 -7.2801 0.0305 20 6 11.1395 -7.4046 -0.4015 21 6 11.9755 -6.4257 0.4312 22 6 11.6304 -5.0036 -0.0180 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6579 -3.1498 0.8924 28 1 5.9142 -2.1222 0.8935 29 1 5.9157 -2.1230 -0.8865 30 1 5.4096 -4.7550 0.0032 31 1 7.9658 -2.1995 0.0069 32 1 10.3764 -2.6647 0.0042 33 1 7.1771 -6.3983 0.0045 34 1 9.5689 -7.6757 1.0401 35 1 9.0530 -7.8551 -0.6511 36 1 11.4876 -8.4232 -0.2296 37 1 11.2315 -7.1583 -1.4593 38 1 11.7423 -6.5513 1.4887 39 1 13.0359 -6.6145 0.2644 40 1 12.0054 -4.8328 -1.0271 41 1 12.1017 -4.2963 0.6644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404765153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:25 Heat of formation + Delta-G solvation = -11.204151 kcal Electronic energy + Delta-G solvation = -18261.945961 eV Core-core repulsion = 15525.668536 eV Total energy + Delta-G solvation = -2736.277425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01628 -37.34782 -35.14741 -33.39603 -32.46030 -31.48305 -29.38682 -28.57496 -26.29041 -23.72673 -23.14925 -22.15499 -21.69731 -20.24294 -19.15390 -16.90951 -16.65263 -16.12334 -15.47857 -14.94707 -14.62722 -14.52918 -14.10192 -13.98466 -13.68013 -13.32623 -13.03618 -12.74111 -12.53948 -12.47418 -12.14812 -11.91067 -11.55552 -11.38885 -11.08707 -11.03481 -10.90204 -10.57255 -10.39307 -10.09572 -9.90494 -9.71824 -9.53820 -9.24938 -8.60627 -8.57756 -7.14486 -6.08086 -4.06904 1.51139 1.71383 3.28429 3.36029 3.39102 3.67641 3.92162 4.41843 4.56907 4.62675 4.72523 5.02073 5.04532 5.14073 5.25641 5.35096 5.40519 5.42812 5.47478 5.50402 5.61914 5.63670 5.70533 5.79324 5.85316 5.90057 5.97670 6.02901 6.10002 6.14708 6.42392 6.43115 6.50161 6.57959 6.75993 6.80909 7.02555 7.20080 7.33885 7.54653 7.74604 7.94635 8.48913 8.95982 9.53843 11.05288 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.050489 B = 0.003079 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.440081 B = 9090.646937 C = 9580.927408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.112 4.112 11 C 0.119 3.881 12 N -0.744 5.744 13 C 0.223 3.777 14 C -0.198 4.198 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.029 4.029 18 C -0.207 4.207 19 C -0.080 4.080 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.069 4.069 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.398 0.602 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.666 -12.497 0.053 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.150 4.150 11 C -0.004 4.004 12 N -0.372 5.372 13 C 0.118 3.882 14 C -0.221 4.221 15 C -0.090 4.090 16 C -0.150 4.150 17 C -0.030 4.030 18 C -0.230 4.230 19 C -0.117 4.117 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.106 4.106 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.232 0.768 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.429 -12.148 0.058 26.391 hybrid contribution -0.117 0.773 -0.019 0.782 sum 23.312 -11.375 0.038 25.939 Atomic orbital electron populations 1.69913 1.06321 1.26966 1.50981 1.25040 0.94759 0.99244 0.94488 0.86761 0.80355 0.83528 0.78544 1.20247 1.21344 1.18966 1.21105 0.89350 0.94521 1.51060 0.91045 1.19498 0.97310 0.91517 0.96483 1.21662 0.90821 1.00847 1.01716 1.21597 0.96431 0.81898 1.00498 1.44950 1.02857 1.08218 1.81156 1.17804 0.84415 0.93301 0.92659 1.20630 0.92810 0.98159 1.10456 1.20857 0.94762 0.95843 0.97580 1.19249 0.94759 0.92489 1.08491 1.19232 0.92108 0.94457 0.97222 1.20507 0.95207 0.94652 1.12660 1.20463 0.96465 0.93001 1.01818 1.21534 0.94783 0.99119 1.00179 1.21596 0.99200 0.94860 0.99990 1.20356 0.92249 0.96879 1.01131 0.92678 0.96409 0.96837 0.92209 0.92187 0.92670 0.92687 0.76758 0.86124 0.86660 0.86681 0.90840 0.91014 0.91824 0.91697 0.91717 0.91926 0.91480 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.12 1.91 4.92 -4.05 -0.02 1.89 16 12 N -0.74 -10.73 5.73 -58.71 -0.34 -11.07 16 13 C 0.22 3.17 6.65 -83.89 -0.56 2.61 16 14 C -0.20 -2.74 9.31 -39.48 -0.37 -3.11 16 15 C -0.07 -0.88 9.60 -39.47 -0.38 -1.26 16 16 C -0.15 -1.72 5.74 -104.55 -0.60 -2.32 16 17 C -0.03 -0.35 5.73 -104.63 -0.60 -0.95 16 18 C -0.21 -2.66 9.45 -39.24 -0.37 -3.03 16 19 C -0.08 -0.73 5.67 -28.05 -0.16 -0.89 16 20 C -0.12 -0.92 5.97 -26.71 -0.16 -1.08 16 21 C -0.12 -0.93 6.00 -26.53 -0.16 -1.09 16 22 C -0.07 -0.62 5.67 -27.86 -0.16 -0.78 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 29 H 0.05 0.88 7.96 -51.92 -0.41 0.47 16 30 H 0.40 5.25 8.49 -40.82 -0.35 4.90 16 31 H 0.12 1.64 6.76 -52.49 -0.36 1.28 16 32 H 0.12 1.18 8.05 -52.49 -0.42 0.76 16 33 H 0.12 1.32 8.05 -52.49 -0.42 0.89 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.61 8.12 -51.92 -0.42 0.18 16 36 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 37 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.06 0.52 8.10 -51.92 -0.42 0.10 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -30.48 326.70 -10.47 -40.96 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.95 Total: 1.27 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -4.21 Total: -25.95 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.44 Total: -38.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.48 -10.47 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404765153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.751 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds