Wall clock time and date at job start Mon Mar 30 2020 07:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47339 * 269.99798 * 3 2 1 5 5 H 1.48498 * 109.47200 * 30.00091 * 3 2 1 6 6 H 1.48507 * 109.46980 * 149.99745 * 3 2 1 7 7 C 1.37875 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99959 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47030 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47057 * 180.02562 * 11 10 9 13 13 C 1.39681 * 119.99965 * 179.97438 * 12 11 10 14 14 C 1.38940 * 120.19098 * 0.02562 * 13 12 11 15 15 C 1.37792 * 119.69382 * 180.12425 * 14 13 12 16 16 C 1.38987 * 120.64799 * 0.03262 * 15 14 13 17 17 C 1.37735 * 119.79687 * 359.40647 * 16 15 14 18 18 C 1.38604 * 120.19581 * 180.02562 * 13 12 11 19 19 C 1.50642 * 122.55916 * 181.01472 * 17 16 15 20 20 C 1.52726 * 110.58430 * 342.18641 * 19 17 16 21 21 C 1.53313 * 108.38547 * 51.20234 * 20 19 17 22 22 C 1.50659 * 117.67921 * 179.31821 * 16 15 14 23 23 H 0.96997 * 120.00475 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47028 * 60.00489 * 9 7 2 25 25 H 1.08995 * 109.47436 * 300.00201 * 9 7 2 26 26 H 1.08996 * 109.46774 * 60.00468 * 10 9 7 27 27 H 1.08995 * 109.47353 * 300.00386 * 10 9 7 28 28 H 1.09002 * 109.46907 * 59.99818 * 11 10 9 29 29 H 1.09009 * 109.47338 * 300.00388 * 11 10 9 30 30 H 0.96999 * 120.00231 * 0.02562 * 12 11 10 31 31 H 1.07996 * 120.15696 * 0.09758 * 14 13 12 32 32 H 1.07995 * 119.68127 * 180.02562 * 15 14 13 33 33 H 1.08002 * 119.75262 * 359.97333 * 18 13 12 34 34 H 1.08998 * 109.25867 * 102.47513 * 19 17 16 35 35 H 1.09010 * 109.25291 * 221.90121 * 19 17 16 36 36 H 1.09008 * 109.68023 * 170.93033 * 20 19 17 37 37 H 1.09000 * 109.67983 * 291.47806 * 20 19 17 38 38 H 1.09007 * 109.67573 * 49.89593 * 21 20 19 39 39 H 1.08996 * 109.67749 * 170.39831 * 21 20 19 40 40 H 1.08997 * 109.25014 * 282.64103 * 22 16 15 41 41 H 1.08999 * 109.24771 * 42.06638 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0035 12 7 6.0399 -4.0177 0.0040 13 6 7.4132 -4.2729 0.0046 14 6 8.3196 -3.2198 0.0053 15 6 9.6721 -3.4834 0.0032 16 6 10.1388 -4.7925 -0.0001 17 6 9.2429 -5.8386 0.0109 18 6 7.8797 -5.5781 0.0045 19 6 9.6799 -7.2801 0.0305 20 6 11.1395 -7.4046 -0.4015 21 6 11.9755 -6.4257 0.4312 22 6 11.6304 -5.0036 -0.0180 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6579 -3.1498 0.8924 28 1 5.9142 -2.1222 0.8935 29 1 5.9157 -2.1230 -0.8865 30 1 5.4096 -4.7550 0.0032 31 1 7.9658 -2.1995 0.0069 32 1 10.3764 -2.6647 0.0042 33 1 7.1771 -6.3983 0.0045 34 1 9.5689 -7.6757 1.0401 35 1 9.0530 -7.8551 -0.6511 36 1 11.4876 -8.4232 -0.2296 37 1 11.2315 -7.1583 -1.4593 38 1 11.7423 -6.5513 1.4887 39 1 13.0359 -6.6145 0.2644 40 1 12.0054 -4.8328 -1.0271 41 1 12.1017 -4.2963 0.6644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404765153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:24 Heat of formation + Delta-G solvation = -27.179582 kcal Electronic energy + Delta-G solvation = -18262.638708 eV Core-core repulsion = 15525.668536 eV Total energy + Delta-G solvation = -2736.970172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90932 -38.36109 -36.41147 -35.02305 -33.61813 -32.94284 -30.31544 -29.78975 -27.74029 -24.77460 -24.36328 -23.11083 -22.69712 -21.88999 -19.98470 -18.95841 -17.73208 -17.14628 -16.46149 -16.35994 -16.20354 -15.39480 -15.31960 -14.80896 -14.69180 -14.58379 -14.41967 -14.01090 -13.80897 -13.60900 -13.30807 -12.96272 -12.88913 -12.67228 -12.41816 -12.16530 -11.84800 -11.71050 -11.69726 -11.60419 -11.35032 -11.23931 -11.11134 -10.78304 -10.59133 -9.54159 -8.31264 -8.18268 -6.36162 0.55515 0.75069 1.36040 1.37850 1.49819 2.35220 2.54867 2.96348 3.04227 3.82387 3.92756 4.06885 4.12247 4.17163 4.19283 4.32331 4.33795 4.45382 4.53496 4.66804 4.73425 4.74798 4.81153 4.88876 4.94439 5.00554 5.03622 5.10570 5.17634 5.18358 5.22975 5.32292 5.42875 5.51134 5.53433 5.53614 5.62476 5.66218 5.89985 6.08954 6.24910 6.48304 6.72084 6.88016 7.28712 8.85552 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.050489 B = 0.003079 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.440081 B = 9090.646937 C = 9580.927408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.009 4.009 10 C -0.102 4.102 11 C 0.136 3.864 12 N -0.747 5.747 13 C 0.202 3.798 14 C -0.216 4.216 15 C -0.079 4.079 16 C -0.151 4.151 17 C -0.038 4.038 18 C -0.215 4.215 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.070 4.070 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.402 0.598 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.832 -12.526 0.051 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.047 4.047 10 C -0.140 4.140 11 C 0.011 3.989 12 N -0.377 5.377 13 C 0.099 3.901 14 C -0.238 4.238 15 C -0.097 4.097 16 C -0.153 4.153 17 C -0.039 4.039 18 C -0.238 4.238 19 C -0.118 4.118 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.107 4.107 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.237 0.763 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.627 -12.206 0.055 29.292 hybrid contribution -1.107 0.665 -0.020 1.291 sum 25.521 -11.541 0.035 28.009 Atomic orbital electron populations 1.70072 1.08390 1.28247 1.52595 1.26068 0.95661 1.03732 0.94041 0.85616 0.79559 0.77952 0.79278 1.19084 1.21048 1.16690 1.21486 0.92145 0.93125 1.50554 0.95077 1.19443 0.93872 0.94404 0.96939 1.21448 0.93111 0.98092 1.01310 1.21269 0.93826 0.83058 1.00732 1.44772 1.03302 1.07501 1.82082 1.17985 0.84090 0.94093 0.93950 1.20776 0.93628 0.98048 1.11395 1.21140 0.94542 0.96924 0.97116 1.19661 0.96400 0.92206 1.07075 1.19621 0.91755 0.96095 0.96379 1.20730 0.96111 0.94457 1.12508 1.20529 0.97606 0.91246 1.02435 1.21546 0.93753 1.00207 0.99935 1.21609 1.00289 0.93910 0.99715 1.20429 0.90320 0.98106 1.01876 0.92461 0.95803 0.95910 0.92666 0.92686 0.92494 0.92441 0.76323 0.86365 0.84848 0.85819 0.90187 0.90469 0.90068 0.91980 0.92011 0.90126 0.90754 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.00 0.09 5.47 84.65 0.46 0.56 16 3 Si 0.95 44.13 27.47 68.60 1.88 46.02 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 7 C -0.54 -30.98 9.66 25.60 0.25 -30.73 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 11 C 0.14 4.22 4.92 86.38 0.42 4.64 16 12 N -0.75 -21.15 5.73 -339.65 -1.95 -23.10 16 13 C 0.20 5.61 6.65 38.15 0.25 5.86 16 14 C -0.22 -5.79 9.31 22.33 0.21 -5.58 16 15 C -0.08 -1.82 9.60 22.34 0.21 -1.60 16 16 C -0.15 -3.25 5.74 -19.82 -0.11 -3.37 16 17 C -0.04 -0.83 5.73 -19.87 -0.11 -0.95 16 18 C -0.22 -5.33 9.45 22.49 0.21 -5.12 16 19 C -0.08 -1.31 5.67 29.74 0.17 -1.14 16 20 C -0.12 -1.50 5.97 30.61 0.18 -1.31 16 21 C -0.12 -1.49 6.00 30.72 0.18 -1.30 16 22 C -0.07 -1.09 5.67 29.86 0.17 -0.92 16 23 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 24 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 25 H 0.02 1.00 7.57 -2.39 -0.02 0.99 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.75 7.96 -2.39 -0.02 1.74 16 29 H 0.06 1.76 7.96 -2.38 -0.02 1.74 16 30 H 0.40 10.49 8.49 -92.71 -0.79 9.71 16 31 H 0.12 3.12 6.76 -2.91 -0.02 3.10 16 32 H 0.13 2.47 8.05 -2.91 -0.02 2.45 16 33 H 0.12 2.73 8.05 -2.91 -0.02 2.70 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.15 8.12 -2.38 -0.02 1.13 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 38 H 0.06 0.83 8.10 -2.38 -0.02 0.81 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 Total: -1.00 -66.15 326.70 3.17 -62.98 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.15 Total: 18.92 kcal Atomic # 6 Polarization: -47.69 SS G_CDS: 2.78 Total: -44.91 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.65 Total: -83.01 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -66.15 3.17 -62.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404765153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.799 kcal (2) G-P(sol) polarization free energy of solvation -66.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds