Wall clock time and date at job start Mon Mar 30 2020 07:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00581 * 2 1 4 4 H 1.48496 * 109.47060 * 269.99869 * 3 2 1 5 5 H 1.48504 * 109.47035 * 29.99416 * 3 2 1 6 6 H 1.48498 * 109.47691 * 149.99454 * 3 2 1 7 7 C 1.37880 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7 12 12 C 1.53000 * 109.46840 * 269.99975 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.53002 * 117.49654 * 243.73967 * 14 13 12 16 16 C 1.53012 * 117.49602 * 175.08431 * 14 13 12 17 17 C 1.39682 * 119.99890 * 269.99785 * 10 9 7 18 18 C 1.38910 * 120.07364 * 179.72510 * 17 10 9 19 19 C 1.38108 * 119.92181 * 179.77280 * 18 17 10 20 20 C 1.38290 * 120.07209 * 0.50426 * 19 18 17 21 21 C 1.38278 * 120.15146 * 359.75037 * 20 19 18 22 22 C 1.38103 * 120.07651 * 359.97438 * 21 20 19 23 23 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46915 * 60.00270 * 9 7 2 25 25 H 1.08994 * 109.47284 * 299.99534 * 9 7 2 26 26 H 1.09002 * 109.47391 * 149.99645 * 11 10 9 27 27 H 1.09001 * 109.46813 * 29.99701 * 11 10 9 28 28 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 29 29 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 30 30 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 31 31 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 32 32 H 1.08997 * 115.55341 * 29.41508 * 14 13 12 33 33 H 1.09000 * 117.49888 * 0.02562 * 15 14 13 34 34 H 1.08997 * 117.49823 * 145.01961 * 15 14 13 35 35 H 1.08998 * 117.49442 * 214.98050 * 16 14 13 36 36 H 1.08998 * 117.49828 * 0.02562 * 16 14 13 37 37 H 1.08000 * 120.03665 * 0.02562 * 18 17 10 38 38 H 1.07997 * 119.96407 * 180.25717 * 19 18 17 39 39 H 1.08002 * 119.92147 * 179.72813 * 20 19 18 40 40 H 1.08000 * 119.96252 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.03884 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.6779 -4.1690 1.2711 12 6 3.9397 -3.4253 1.7134 13 6 4.4361 -4.0067 3.0387 14 6 5.6976 -3.2625 3.4813 15 6 6.9974 -4.0650 3.5677 16 6 6.2857 -3.6200 4.8479 17 6 2.6576 -4.1442 -1.2073 18 6 3.5646 -5.1962 -1.2080 19 6 4.0085 -5.7224 -2.4053 20 6 3.5591 -5.1961 -3.6025 21 6 2.6602 -4.1453 -3.6054 22 6 2.2078 -3.6182 -2.4118 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.9062 -5.2269 1.1413 27 1 1.9039 -4.0548 2.0300 28 1 4.7136 -3.5395 0.9544 29 1 3.7113 -2.3675 1.8431 30 1 3.6624 -3.8928 3.7979 31 1 4.6646 -5.0645 2.9085 32 1 5.7679 -2.2236 3.1593 33 1 6.9539 -5.1229 3.3089 34 1 7.9229 -3.5538 3.3028 35 1 6.7433 -2.8162 5.4246 36 1 5.7742 -4.3855 5.4313 37 1 3.9191 -5.6050 -0.2733 38 1 4.7105 -6.5431 -2.4066 39 1 3.9112 -5.6065 -4.5374 40 1 2.3115 -3.7364 -4.5422 41 1 1.5061 -2.7972 -2.4148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405998451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:22 Heat of formation + Delta-G solvation = 39.286542 kcal Electronic energy + Delta-G solvation = -19112.802323 eV Core-core repulsion = 16378.714338 eV Total energy + Delta-G solvation = -2734.087984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.90987 -37.63346 -35.84286 -33.02361 -32.09406 -30.24732 -28.98140 -27.42559 -25.21742 -22.87541 -22.39331 -21.95599 -21.03974 -20.29539 -19.57716 -16.92751 -16.46281 -15.63363 -15.03532 -14.89275 -14.51028 -14.23060 -14.11390 -13.48712 -13.25604 -12.83069 -12.78075 -12.20028 -11.93990 -11.72167 -11.58158 -11.47831 -11.23649 -11.08388 -10.88915 -10.70921 -10.66154 -10.40724 -10.25520 -10.20703 -9.79255 -9.71141 -9.59208 -8.87591 -8.48778 -8.24529 -6.46871 -6.00829 -4.15048 2.12721 2.34927 3.26658 3.33420 3.36627 3.84726 4.11166 4.40739 4.61693 4.76660 4.98727 4.99603 5.23004 5.37054 5.49720 5.52708 5.60039 5.61089 5.66011 5.79814 5.84087 5.89279 6.05487 6.09545 6.10945 6.16429 6.18688 6.33553 6.38644 6.45297 6.62411 6.69447 6.89530 7.03160 7.11089 7.21484 7.28811 7.38543 7.64231 7.83275 8.18180 8.30653 8.52551 8.94017 9.51364 10.97140 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.008184 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.393542 B = 3420.371612 C = 5485.000990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.250 3.750 10 N -0.611 5.611 11 C 0.131 3.869 12 C -0.135 4.135 13 C -0.085 4.085 14 C -0.145 4.145 15 C -0.183 4.183 16 C -0.186 4.186 17 C 0.239 3.761 18 C -0.219 4.219 19 C -0.079 4.079 20 C -0.206 4.206 21 C -0.078 4.078 22 C -0.188 4.188 23 H 0.263 0.737 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -9.250 3.032 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.130 3.870 10 N -0.316 5.316 11 C 0.007 3.993 12 C -0.174 4.174 13 C -0.123 4.123 14 C -0.164 4.164 15 C -0.220 4.220 16 C -0.223 4.223 17 C 0.133 3.867 18 C -0.242 4.242 19 C -0.098 4.098 20 C -0.226 4.226 21 C -0.097 4.097 22 C -0.210 4.210 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.180 -9.024 3.249 12.606 hybrid contribution 0.558 1.129 0.031 1.260 sum 8.738 -7.895 3.281 12.225 Atomic orbital electron populations 1.69928 1.05968 1.27023 1.50575 1.24951 0.94813 0.99149 0.95161 0.86571 0.79821 0.83292 0.78230 1.20584 1.21216 1.19903 1.21593 0.93621 0.90569 1.50704 0.92090 1.19277 0.87242 0.82585 0.97899 1.47159 1.47154 1.36034 1.01237 1.21245 0.95749 0.96080 0.86258 1.22059 0.97667 1.02112 0.95557 1.21138 0.95133 0.98345 0.97729 1.22398 0.94246 1.00244 0.99472 1.23012 0.96439 1.00431 1.02147 1.22956 1.04792 1.03579 0.90972 1.17928 0.91183 0.90791 0.86803 1.20582 1.04365 1.01358 0.97941 1.20674 0.98377 0.98432 0.92346 1.20647 1.03718 1.01179 0.97080 1.20816 0.96252 0.95526 0.97082 1.20914 1.05517 1.03740 0.90851 0.92723 0.94770 0.95287 0.92336 0.91501 0.92189 0.90082 0.91718 0.92409 0.87745 0.89001 0.89252 0.89200 0.89033 0.86959 0.87517 0.87740 0.87193 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.03 8.92 -34.44 -0.31 -14.34 16 8 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 9 C 0.25 6.15 4.96 -5.19 -0.03 6.12 16 10 N -0.61 -12.76 2.59 -173.12 -0.45 -13.21 16 11 C 0.13 2.27 5.20 -4.04 -0.02 2.25 16 12 C -0.14 -2.24 5.50 -26.73 -0.15 -2.39 16 13 C -0.09 -1.14 5.49 -26.73 -0.15 -1.28 16 14 C -0.15 -1.87 5.73 -90.61 -0.52 -2.39 16 15 C -0.18 -2.05 10.18 -26.69 -0.27 -2.32 16 16 C -0.19 -2.03 10.26 -26.69 -0.27 -2.30 16 17 C 0.24 4.86 6.55 -83.78 -0.55 4.31 16 18 C -0.22 -3.88 9.21 -39.38 -0.36 -4.24 16 19 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 20 C -0.21 -3.34 10.04 -39.55 -0.40 -3.74 16 21 C -0.08 -1.38 10.04 -39.62 -0.40 -1.78 16 22 C -0.19 -3.85 9.21 -39.38 -0.36 -4.22 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.03 0.90 6.20 -51.93 -0.32 0.58 16 25 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 26 H 0.06 0.90 6.21 -51.93 -0.32 0.58 16 27 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.58 7.26 -51.93 -0.38 1.20 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 32 H 0.10 1.45 8.08 -51.93 -0.42 1.03 16 33 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 1.80 6.15 -52.49 -0.32 1.48 16 38 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -27.90 335.86 -10.59 -38.49 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.64 Total: 4.63 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -4.28 Total: -26.42 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.29 Total: -38.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.90 -10.59 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405998451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds