Wall clock time and date at job start Mon Mar 30 2020 07:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00581 * 2 1 4 4 H 1.48496 * 109.47060 * 269.99869 * 3 2 1 5 5 H 1.48504 * 109.47035 * 29.99416 * 3 2 1 6 6 H 1.48498 * 109.47691 * 149.99454 * 3 2 1 7 7 C 1.37880 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7 12 12 C 1.53000 * 109.46840 * 269.99975 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.53002 * 117.49654 * 243.73967 * 14 13 12 16 16 C 1.53012 * 117.49602 * 175.08431 * 14 13 12 17 17 C 1.39682 * 119.99890 * 269.99785 * 10 9 7 18 18 C 1.38910 * 120.07364 * 179.72510 * 17 10 9 19 19 C 1.38108 * 119.92181 * 179.77280 * 18 17 10 20 20 C 1.38290 * 120.07209 * 0.50426 * 19 18 17 21 21 C 1.38278 * 120.15146 * 359.75037 * 20 19 18 22 22 C 1.38103 * 120.07651 * 359.97438 * 21 20 19 23 23 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46915 * 60.00270 * 9 7 2 25 25 H 1.08994 * 109.47284 * 299.99534 * 9 7 2 26 26 H 1.09002 * 109.47391 * 149.99645 * 11 10 9 27 27 H 1.09001 * 109.46813 * 29.99701 * 11 10 9 28 28 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 29 29 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 30 30 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 31 31 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 32 32 H 1.08997 * 115.55341 * 29.41508 * 14 13 12 33 33 H 1.09000 * 117.49888 * 0.02562 * 15 14 13 34 34 H 1.08997 * 117.49823 * 145.01961 * 15 14 13 35 35 H 1.08998 * 117.49442 * 214.98050 * 16 14 13 36 36 H 1.08998 * 117.49828 * 0.02562 * 16 14 13 37 37 H 1.08000 * 120.03665 * 0.02562 * 18 17 10 38 38 H 1.07997 * 119.96407 * 180.25717 * 19 18 17 39 39 H 1.08002 * 119.92147 * 179.72813 * 20 19 18 40 40 H 1.08000 * 119.96252 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.03884 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.6779 -4.1690 1.2711 12 6 3.9397 -3.4253 1.7134 13 6 4.4361 -4.0067 3.0387 14 6 5.6976 -3.2625 3.4813 15 6 6.9974 -4.0650 3.5677 16 6 6.2857 -3.6200 4.8479 17 6 2.6576 -4.1442 -1.2073 18 6 3.5646 -5.1962 -1.2080 19 6 4.0085 -5.7224 -2.4053 20 6 3.5591 -5.1961 -3.6025 21 6 2.6602 -4.1453 -3.6054 22 6 2.2078 -3.6182 -2.4118 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.9062 -5.2269 1.1413 27 1 1.9039 -4.0548 2.0300 28 1 4.7136 -3.5395 0.9544 29 1 3.7113 -2.3675 1.8431 30 1 3.6624 -3.8928 3.7979 31 1 4.6646 -5.0645 2.9085 32 1 5.7679 -2.2236 3.1593 33 1 6.9539 -5.1229 3.3089 34 1 7.9229 -3.5538 3.3028 35 1 6.7433 -2.8162 5.4246 36 1 5.7742 -4.3855 5.4313 37 1 3.9191 -5.6050 -0.2733 38 1 4.7105 -6.5431 -2.4066 39 1 3.9112 -5.6065 -4.5374 40 1 2.3115 -3.7364 -4.5422 41 1 1.5061 -2.7972 -2.4148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405998451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:22 Heat of formation + Delta-G solvation = 27.662387 kcal Electronic energy + Delta-G solvation = -19113.306384 eV Core-core repulsion = 16378.714338 eV Total energy + Delta-G solvation = -2734.592045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37077 -38.64538 -37.30552 -34.93432 -33.56279 -31.67210 -30.56361 -29.05777 -26.76371 -24.66825 -23.39215 -23.15220 -22.49136 -21.39474 -20.99547 -18.56434 -18.41044 -16.92177 -16.60510 -16.20693 -15.98904 -15.67056 -15.30956 -14.86760 -14.80506 -14.35166 -14.18680 -13.96308 -13.35201 -13.14864 -13.04694 -12.85470 -12.73497 -12.53140 -12.34440 -12.22289 -12.11898 -12.01846 -11.71008 -11.62863 -11.29760 -11.07547 -10.71358 -10.62516 -10.44260 -9.65091 -8.35483 -7.80954 -6.33653 0.71733 0.93958 1.34773 1.35797 1.45929 2.33772 2.60354 2.95378 3.08022 3.19809 3.76130 4.00798 4.05252 4.12548 4.21756 4.30237 4.34778 4.46811 4.50276 4.64997 4.72859 4.79392 4.80020 4.80708 4.89365 4.99541 5.01076 5.12959 5.13553 5.21045 5.27801 5.31830 5.33747 5.40000 5.55836 5.63733 5.72559 5.79110 5.90578 6.10646 6.25087 6.54330 6.86674 6.97970 7.37302 8.85103 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.008184 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.393542 B = 3420.371612 C = 5485.000990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.268 3.732 10 N -0.623 5.623 11 C 0.129 3.871 12 C -0.121 4.121 13 C -0.075 4.075 14 C -0.172 4.172 15 C -0.175 4.175 16 C -0.175 4.175 17 C 0.212 3.788 18 C -0.217 4.217 19 C -0.074 4.074 20 C -0.197 4.197 21 C -0.082 4.082 22 C -0.221 4.221 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.916 -11.136 2.971 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.146 3.854 10 N -0.329 5.329 11 C 0.006 3.994 12 C -0.160 4.160 13 C -0.112 4.112 14 C -0.190 4.190 15 C -0.212 4.212 16 C -0.211 4.211 17 C 0.107 3.893 18 C -0.240 4.240 19 C -0.092 4.092 20 C -0.217 4.217 21 C -0.101 4.101 22 C -0.244 4.244 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.663 -10.935 3.180 15.601 hybrid contribution -0.176 1.629 -0.040 1.639 sum 10.488 -9.305 3.140 14.368 Atomic orbital electron populations 1.70033 1.07297 1.27893 1.51589 1.25721 0.95602 1.02424 0.94900 0.85607 0.78696 0.79415 0.78305 1.20190 1.20389 1.19491 1.21759 0.93120 0.91785 1.50094 0.93137 1.18754 0.87476 0.83664 0.95472 1.47003 1.47354 1.35641 1.02914 1.21425 0.95783 0.97420 0.84760 1.21868 0.97034 0.99838 0.97264 1.21035 0.95375 0.99254 0.95573 1.22316 0.95186 0.99585 1.01938 1.23107 0.95514 1.00765 1.01792 1.23045 1.03867 1.03828 0.90405 1.18221 0.92637 0.92209 0.86186 1.20838 1.03217 1.00197 0.99738 1.21161 0.97975 0.98691 0.91379 1.21083 1.02049 0.99752 0.98861 1.21072 0.96411 0.95995 0.96632 1.20842 1.06617 1.04184 0.92732 0.92549 0.97340 0.97445 0.89546 0.91918 0.93088 0.94013 0.91637 0.90269 0.89806 0.87812 0.88743 0.88526 0.87818 0.85119 0.83506 0.84231 0.85489 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 2 C 0.01 0.70 5.46 84.66 0.46 1.16 16 3 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.53 -29.67 8.92 25.60 0.23 -29.45 16 8 H 0.05 2.88 7.42 -2.91 -0.02 2.86 16 9 C 0.27 14.10 4.96 85.63 0.42 14.53 16 10 N -0.62 -27.06 2.59 -701.62 -1.82 -28.88 16 11 C 0.13 4.52 5.20 86.38 0.45 4.97 16 12 C -0.12 -4.07 5.50 30.59 0.17 -3.90 16 13 C -0.07 -1.90 5.49 30.59 0.17 -1.73 16 14 C -0.17 -4.25 5.73 -10.79 -0.06 -4.31 16 15 C -0.17 -3.48 10.18 30.62 0.31 -3.17 16 16 C -0.17 -3.42 10.26 30.62 0.31 -3.11 16 17 C 0.21 8.72 6.55 38.21 0.25 8.97 16 18 C -0.22 -7.22 9.21 22.40 0.21 -7.01 16 19 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 20 C -0.20 -5.73 10.04 22.29 0.22 -5.51 16 21 C -0.08 -2.85 10.04 22.25 0.22 -2.63 16 22 C -0.22 -9.41 9.21 22.40 0.21 -9.21 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.01 0.49 6.20 -2.39 -0.01 0.48 16 25 H 0.01 0.42 7.89 -2.39 -0.02 0.40 16 26 H 0.09 2.52 6.21 -2.39 -0.01 2.50 16 27 H 0.06 2.21 7.89 -2.39 -0.02 2.19 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.71 7.26 -2.39 -0.02 1.69 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.69 7.88 -2.39 -0.02 1.67 16 32 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.10 1.82 8.03 -2.39 -0.02 1.81 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.13 3.78 6.15 -2.91 -0.02 3.77 16 38 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 39 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.09 4.62 6.14 -2.91 -0.02 4.60 16 Total: -1.00 -63.00 335.86 5.27 -57.72 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.98 Total: 21.31 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.80 Total: -42.26 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.53 Total: -83.54 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.00 5.27 -57.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405998451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.387 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds