Wall clock time and date at job start Mon Mar 30 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34644 * 119.47256 * 2 1 4 4 C 1.41774 * 120.28035 * 180.02562 * 3 2 1 5 5 C 1.43201 * 120.35842 * 180.02562 * 4 3 2 6 6 N 4.78937 * 134.32801 * 0.02562 * 2 1 3 7 7 C 1.38057 * 119.28133 * 359.76875 * 4 3 2 8 8 C 1.41556 * 119.00045 * 0.47557 * 7 4 3 9 9 N 1.31610 * 120.15896 * 179.77069 * 8 7 4 10 10 C 1.46497 * 119.99823 * 354.35250 * 9 8 7 11 11 C 1.53007 * 109.46936 * 113.22182 * 10 9 8 12 12 C 1.52998 * 109.46942 * 299.99737 * 11 10 9 13 13 C 1.52996 * 109.46952 * 59.99930 * 11 10 9 14 14 C 1.50694 * 109.46901 * 179.97438 * 11 10 9 15 15 H 1.07997 * 120.00199 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99823 * 180.02562 * 14 11 10 17 17 N 1.31519 * 120.00073 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00108 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47303 * 89.99947 * 18 16 14 20 20 H 1.48501 * 109.46927 * 210.00060 * 18 16 14 21 21 H 1.48500 * 109.46818 * 329.99828 * 18 16 14 22 22 N 1.36391 * 119.47325 * 180.02562 * 2 1 3 23 23 H 0.97003 * 119.65196 * 359.96905 * 22 2 1 24 24 H 1.08997 * 109.47528 * 269.97624 * 1 2 3 25 25 H 1.08996 * 109.47266 * 29.98317 * 1 2 3 26 26 H 1.09009 * 109.46858 * 149.97561 * 1 2 3 27 27 H 1.08001 * 119.85949 * 0.04710 * 3 2 1 28 28 H 1.07997 * 120.49826 * 180.23020 * 7 4 3 29 29 H 1.08995 * 109.47380 * 353.21972 * 10 9 8 30 30 H 1.09000 * 109.47072 * 233.21612 * 10 9 8 31 31 H 1.09004 * 109.47212 * 59.99979 * 12 11 10 32 32 H 1.09003 * 109.47212 * 179.97438 * 12 11 10 33 33 H 1.08994 * 109.47644 * 300.00116 * 12 11 10 34 34 H 1.09000 * 109.47575 * 59.99659 * 13 11 10 35 35 H 1.09003 * 109.46982 * 180.02562 * 13 11 10 36 36 H 1.09007 * 109.47476 * 299.99987 * 13 11 10 37 37 H 0.96998 * 120.00125 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1695 1.1722 0.0000 4 6 3.5871 1.1922 -0.0005 5 6 4.2933 2.4379 0.0000 6 7 4.8536 3.4261 0.0015 7 6 4.2792 -0.0023 0.0038 8 6 3.5521 -1.2169 -0.0016 9 7 4.1888 -2.3687 -0.0022 10 6 5.6485 -2.3986 -0.1222 11 6 6.2569 -2.9172 1.1825 12 6 5.8587 -1.9919 2.3340 13 6 5.7389 -4.3297 1.4606 14 6 7.7584 -2.9486 1.0589 15 1 8.2315 -2.6302 0.1418 16 6 8.5282 -3.3840 2.1167 17 7 7.9521 -3.7713 3.2337 18 14 10.3896 -3.4222 1.9638 19 1 10.9500 -2.1226 2.4134 20 1 10.9333 -4.5150 2.8097 21 1 10.7650 -3.6596 0.5468 22 7 2.1781 -1.1874 -0.0005 23 1 1.6803 -2.0200 -0.0004 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6186 2.1012 0.0008 28 1 5.3591 -0.0100 0.0072 29 1 6.0175 -1.3924 -0.3204 30 1 5.9322 -3.0579 -0.9425 31 1 4.7725 -1.9696 2.4233 32 1 6.2917 -2.3616 3.2636 33 1 6.2276 -0.9857 2.1359 34 1 6.0225 -4.9889 0.6402 35 1 6.1719 -4.6990 2.3903 36 1 4.6527 -4.3074 1.5499 37 1 8.4936 -4.0779 3.9778 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413414024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:15 Heat of formation + Delta-G solvation = 80.649762 kcal Electronic energy + Delta-G solvation = -18894.130098 eV Core-core repulsion = 16058.295414 eV Total energy + Delta-G solvation = -2835.834684 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38406 -36.81106 -36.62418 -34.25312 -33.39253 -31.65507 -30.07117 -27.09476 -25.60169 -25.38530 -24.95720 -24.43122 -21.21265 -18.62370 -18.23984 -17.85267 -16.71335 -15.87900 -14.98870 -14.71500 -14.55363 -14.22907 -13.62962 -13.61380 -13.35947 -13.07752 -12.88007 -12.71775 -12.60213 -12.28538 -12.05852 -11.55504 -11.28789 -11.13790 -10.75305 -10.61200 -10.26556 -10.14470 -10.08124 -10.02210 -9.41231 -9.11246 -8.84710 -8.40928 -8.25732 -6.91034 -5.90489 -4.02063 0.60169 1.84295 2.67747 2.96586 3.05991 3.32261 3.39228 3.42319 3.82390 3.88279 4.40638 4.45699 4.92545 5.07725 5.11576 5.18644 5.34298 5.35125 5.47163 5.62241 6.05087 6.14298 6.24433 6.41315 6.57683 6.71252 6.90454 7.05200 7.15028 7.20120 7.36289 7.38948 7.47956 7.53250 7.75556 7.80335 8.17547 8.30837 8.47952 8.59382 8.99577 9.63156 11.09413 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.005386 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.332103 B = 5197.389320 C = 5986.991686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.184 3.816 3 C -0.234 4.234 4 C 0.042 3.958 5 C 0.259 3.741 6 N -0.418 5.418 7 C -0.127 4.127 8 C 0.366 3.634 9 N -0.564 5.564 10 C 0.072 3.928 11 C 0.073 3.927 12 C -0.127 4.127 13 C -0.119 4.119 14 C -0.508 4.508 15 H 0.053 0.947 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 N -0.598 5.598 23 H 0.416 0.584 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.156 0.844 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.008 0.992 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.017 0.983 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.945 6.203 -5.766 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 C -0.262 4.262 4 C 0.032 3.968 5 C -0.056 4.056 6 N -0.094 5.094 7 C -0.155 4.155 8 C 0.095 3.905 9 N -0.287 5.287 10 C -0.058 4.058 11 C 0.072 3.928 12 C -0.184 4.184 13 C -0.176 4.176 14 C -0.547 4.547 15 H 0.071 0.929 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 N -0.216 5.216 23 H 0.254 0.746 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.174 0.826 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.027 0.973 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.987 6.654 -5.541 17.308 hybrid contribution 1.224 0.033 0.022 1.225 sum -13.762 6.687 -5.519 16.266 Atomic orbital electron populations 1.21002 0.88225 1.04496 1.04106 1.20002 0.94069 0.85145 0.93387 1.19783 0.91454 0.97183 1.17814 1.16035 0.92417 0.86328 1.01971 1.25736 0.93192 0.92890 0.93786 1.81216 1.08480 1.11344 1.08330 1.22517 1.01859 0.90350 1.00732 1.18516 0.83597 0.90906 0.97457 1.72382 1.12759 1.22071 1.21498 1.22404 0.83057 0.99165 1.01133 1.18144 0.93604 0.92629 0.88429 1.21778 0.95982 0.97523 1.03155 1.21641 0.96533 0.97763 1.01712 1.21108 0.90630 1.43395 0.99594 0.92855 1.24885 0.98163 0.95109 0.95338 1.69841 1.34595 1.44050 1.03801 0.86652 0.86090 0.77579 0.77997 1.20829 1.21281 1.19986 1.41328 1.04656 1.07957 1.67644 0.74641 0.89432 0.89161 0.90493 0.84321 0.82619 0.94976 0.91193 0.97275 0.90023 0.96398 0.96188 0.90652 0.96412 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.07 36.01 0.36 -0.18 16 2 C 0.18 1.61 6.80 -81.84 -0.56 1.05 16 3 C -0.23 -2.31 9.30 -39.50 -0.37 -2.68 16 4 C 0.04 0.54 5.75 -106.69 -0.61 -0.08 16 5 C 0.26 3.69 15.35 -22.47 -0.35 3.35 16 6 N -0.42 -6.71 18.54 41.84 0.78 -5.93 16 7 C -0.13 -1.94 8.94 -38.38 -0.34 -2.28 16 8 C 0.37 5.69 7.37 -156.27 -1.15 4.54 16 9 N -0.56 -10.62 9.20 -60.33 -0.56 -11.18 16 10 C 0.07 1.53 5.01 -4.04 -0.02 1.51 16 11 C 0.07 1.79 0.57 -155.66 -0.09 1.70 16 12 C -0.13 -3.10 8.06 37.16 0.30 -2.80 16 13 C -0.12 -2.96 8.09 37.16 0.30 -2.66 16 14 C -0.51 -13.74 8.01 -34.44 -0.28 -14.02 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 17 N -0.88 -24.73 9.35 55.43 0.52 -24.21 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.60 -6.76 5.37 -8.48 -0.05 -6.80 16 23 H 0.42 3.98 8.80 -40.82 -0.36 3.62 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.28 8.06 -51.93 -0.42 -0.14 16 26 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 27 H 0.14 1.04 8.05 -52.49 -0.42 0.62 16 28 H 0.16 2.59 5.79 -52.49 -0.30 2.29 16 29 H 0.03 0.66 5.24 -51.93 -0.27 0.39 16 30 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.01 0.19 7.38 -51.93 -0.38 -0.19 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 2.05 6.07 -51.93 -0.32 1.73 16 36 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -30.83 311.63 -7.36 -38.19 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.84 Total: -0.18 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.89 Total: -10.83 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.69 Total: -48.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.83 -7.36 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413414024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.839 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds