Wall clock time and date at job start Mon Mar 30 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34644 * 119.47256 * 2 1 4 4 C 1.41774 * 120.28035 * 180.02562 * 3 2 1 5 5 C 1.43201 * 120.35842 * 180.02562 * 4 3 2 6 6 N 4.78937 * 134.32801 * 0.02562 * 2 1 3 7 7 C 1.38057 * 119.28133 * 359.76875 * 4 3 2 8 8 C 1.41556 * 119.00045 * 0.47557 * 7 4 3 9 9 N 1.31610 * 120.15896 * 179.77069 * 8 7 4 10 10 C 1.46497 * 119.99823 * 354.35250 * 9 8 7 11 11 C 1.53007 * 109.46936 * 113.22182 * 10 9 8 12 12 C 1.52998 * 109.46942 * 299.99737 * 11 10 9 13 13 C 1.52996 * 109.46952 * 59.99930 * 11 10 9 14 14 C 1.50694 * 109.46901 * 179.97438 * 11 10 9 15 15 H 1.07997 * 120.00199 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99823 * 180.02562 * 14 11 10 17 17 N 1.31519 * 120.00073 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00108 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47303 * 89.99947 * 18 16 14 20 20 H 1.48501 * 109.46927 * 210.00060 * 18 16 14 21 21 H 1.48500 * 109.46818 * 329.99828 * 18 16 14 22 22 N 1.36391 * 119.47325 * 180.02562 * 2 1 3 23 23 H 0.97003 * 119.65196 * 359.96905 * 22 2 1 24 24 H 1.08997 * 109.47528 * 269.97624 * 1 2 3 25 25 H 1.08996 * 109.47266 * 29.98317 * 1 2 3 26 26 H 1.09009 * 109.46858 * 149.97561 * 1 2 3 27 27 H 1.08001 * 119.85949 * 0.04710 * 3 2 1 28 28 H 1.07997 * 120.49826 * 180.23020 * 7 4 3 29 29 H 1.08995 * 109.47380 * 353.21972 * 10 9 8 30 30 H 1.09000 * 109.47072 * 233.21612 * 10 9 8 31 31 H 1.09004 * 109.47212 * 59.99979 * 12 11 10 32 32 H 1.09003 * 109.47212 * 179.97438 * 12 11 10 33 33 H 1.08994 * 109.47644 * 300.00116 * 12 11 10 34 34 H 1.09000 * 109.47575 * 59.99659 * 13 11 10 35 35 H 1.09003 * 109.46982 * 180.02562 * 13 11 10 36 36 H 1.09007 * 109.47476 * 299.99987 * 13 11 10 37 37 H 0.96998 * 120.00125 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1695 1.1722 0.0000 4 6 3.5871 1.1922 -0.0005 5 6 4.2933 2.4379 0.0000 6 7 4.8536 3.4261 0.0015 7 6 4.2792 -0.0023 0.0038 8 6 3.5521 -1.2169 -0.0016 9 7 4.1888 -2.3687 -0.0022 10 6 5.6485 -2.3986 -0.1222 11 6 6.2569 -2.9172 1.1825 12 6 5.8587 -1.9919 2.3340 13 6 5.7389 -4.3297 1.4606 14 6 7.7584 -2.9486 1.0589 15 1 8.2315 -2.6302 0.1418 16 6 8.5282 -3.3840 2.1167 17 7 7.9521 -3.7713 3.2337 18 14 10.3896 -3.4222 1.9638 19 1 10.9500 -2.1226 2.4134 20 1 10.9333 -4.5150 2.8097 21 1 10.7650 -3.6596 0.5468 22 7 2.1781 -1.1874 -0.0005 23 1 1.6803 -2.0200 -0.0004 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6186 2.1012 0.0008 28 1 5.3591 -0.0100 0.0072 29 1 6.0175 -1.3924 -0.3204 30 1 5.9322 -3.0579 -0.9425 31 1 4.7725 -1.9696 2.4233 32 1 6.2917 -2.3616 3.2636 33 1 6.2276 -0.9857 2.1359 34 1 6.0225 -4.9889 0.6402 35 1 6.1719 -4.6990 2.3903 36 1 4.6527 -4.3074 1.5499 37 1 8.4936 -4.0779 3.9778 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413414024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:14 Heat of formation + Delta-G solvation = 62.022500 kcal Electronic energy + Delta-G solvation = -18894.937837 eV Core-core repulsion = 16058.295414 eV Total energy + Delta-G solvation = -2836.642423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43649 -38.36278 -37.91346 -35.67655 -34.47533 -33.30348 -31.33996 -27.98037 -27.43600 -27.31074 -26.62067 -25.60784 -22.43300 -20.23666 -19.36890 -19.01483 -17.91201 -17.69546 -16.74379 -15.95644 -15.83771 -15.33681 -15.05815 -14.67749 -14.63450 -14.42143 -14.15227 -14.03534 -13.59608 -13.51750 -13.14254 -13.07444 -13.01611 -12.65778 -12.52169 -12.49394 -12.19677 -12.08658 -11.59433 -11.32205 -11.13841 -10.77919 -10.57335 -10.36377 -9.89202 -8.11700 -7.92160 -6.15384 -0.49667 0.89824 1.41025 1.42667 1.49786 1.51671 1.87789 1.95747 2.45901 2.69372 2.78364 3.23852 3.69101 3.93782 4.10925 4.24862 4.47901 4.55964 4.64368 4.75139 4.85168 4.91350 5.00709 5.14698 5.21334 5.24919 5.30117 5.34299 5.37509 5.42169 5.52627 5.68168 5.72051 6.08708 6.19668 6.23816 6.30555 6.36351 6.50202 6.92098 7.29828 7.52384 9.00485 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.005386 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.332103 B = 5197.389320 C = 5986.991686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.208 3.792 3 C -0.243 4.243 4 C 0.075 3.925 5 C 0.274 3.726 6 N -0.446 5.446 7 C -0.184 4.184 8 C 0.386 3.614 9 N -0.614 5.614 10 C 0.089 3.911 11 C 0.062 3.938 12 C -0.106 4.106 13 C -0.103 4.103 14 C -0.527 4.527 15 H 0.047 0.953 16 C 0.022 3.978 17 N -0.905 5.905 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.271 1.271 22 N -0.583 5.583 23 H 0.428 0.572 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.174 0.826 28 H 0.131 0.869 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.836 7.522 -6.306 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 C -0.271 4.271 4 C 0.066 3.934 5 C -0.041 4.041 6 N -0.122 5.122 7 C -0.212 4.212 8 C 0.116 3.884 9 N -0.340 5.340 10 C -0.041 4.041 11 C 0.061 3.939 12 C -0.163 4.163 13 C -0.160 4.160 14 C -0.565 4.565 15 H 0.065 0.935 16 C -0.177 4.177 17 N -0.544 5.544 18 Si 0.772 3.228 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.196 1.196 22 N -0.200 5.200 23 H 0.267 0.733 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.112 0.888 27 H 0.191 0.809 28 H 0.149 0.851 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.919 7.987 -6.089 20.542 hybrid contribution 1.853 -0.176 0.161 1.868 sum -16.066 7.810 -5.929 18.822 Atomic orbital electron populations 1.21229 0.83993 1.06622 1.05773 1.20857 0.96352 0.83563 0.89538 1.20225 0.89806 0.99249 1.17790 1.16259 0.93792 0.84788 0.98555 1.25921 0.92462 0.92723 0.92987 1.81234 1.09319 1.12652 1.08984 1.22157 1.00964 0.91229 1.06862 1.18645 0.85039 0.90258 0.94411 1.72337 1.10522 1.23227 1.27946 1.21919 0.85467 0.98320 0.98396 1.18185 0.92705 0.92502 0.90465 1.21513 0.96210 0.96969 1.01647 1.21441 0.96845 0.97890 0.99871 1.21441 0.92397 1.43311 0.99380 0.93514 1.25560 1.01985 0.94987 0.95157 1.69977 1.35731 1.44507 1.04181 0.85756 0.81537 0.77499 0.78005 1.20624 1.20897 1.19594 1.41557 1.03298 1.09846 1.65265 0.73250 0.87666 0.86665 0.88816 0.80874 0.85149 0.95178 0.92941 0.96260 0.92875 0.96864 0.96876 0.93250 0.95419 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.34 10.07 71.24 0.72 0.38 16 2 C 0.21 2.67 6.80 41.03 0.28 2.95 16 3 C -0.24 -3.78 9.30 22.32 0.21 -3.57 16 4 C 0.08 1.80 5.75 -21.20 -0.12 1.68 16 5 C 0.27 7.45 15.35 88.33 1.36 8.81 16 6 N -0.45 -13.92 18.54 19.00 0.35 -13.57 16 7 C -0.18 -5.59 8.94 23.05 0.21 -5.39 16 8 C 0.39 11.70 7.37 134.43 0.99 12.69 16 9 N -0.61 -23.41 9.20 -344.77 -3.17 -26.58 16 10 C 0.09 3.97 5.01 86.38 0.43 4.40 16 11 C 0.06 3.17 0.57 -52.93 -0.03 3.14 16 12 C -0.11 -5.33 8.06 71.98 0.58 -4.75 16 13 C -0.10 -5.28 8.09 71.98 0.58 -4.70 16 14 C -0.53 -29.43 8.01 25.60 0.21 -29.22 16 15 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 16 C 0.02 1.23 5.15 84.66 0.44 1.67 16 17 N -0.90 -52.02 9.35 21.45 0.20 -51.82 16 18 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 N -0.58 -11.44 5.37 -180.74 -0.97 -12.41 16 23 H 0.43 6.77 8.80 -92.71 -0.82 5.96 16 24 H 0.11 0.12 8.14 -2.39 -0.02 0.11 16 25 H 0.11 -0.09 8.06 -2.39 -0.02 -0.11 16 26 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 27 H 0.17 1.60 8.05 -2.91 -0.02 1.58 16 28 H 0.13 4.61 5.79 -2.91 -0.02 4.59 16 29 H 0.03 1.31 5.24 -2.39 -0.01 1.30 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 32 H 0.05 2.96 6.07 -2.39 -0.01 2.95 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 2.77 6.07 -2.39 -0.01 2.75 16 36 H 0.03 1.31 7.60 -2.38 -0.02 1.29 16 37 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -69.86 311.63 4.55 -65.30 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.28 Total: 4.46 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 5.84 Total: -11.91 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.59 Total: -104.38 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.86 4.55 -65.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413414024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.326 kcal (2) G-P(sol) polarization free energy of solvation -69.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds