Wall clock time and date at job start Mon Mar 30 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99686 * 2 1 4 4 N 1.46900 * 109.47075 * 124.99612 * 3 2 1 5 5 C 1.46903 * 110.99532 * 194.06356 * 4 3 2 6 6 C 1.50700 * 109.47454 * 71.58027 * 5 4 3 7 7 H 1.08000 * 119.99758 * 5.05067 * 6 5 4 8 8 C 1.37870 * 120.00316 * 185.05413 * 6 5 4 9 9 N 1.31516 * 120.00016 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00314 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47102 * 90.00027 * 10 8 6 12 12 H 1.48496 * 109.47290 * 210.00123 * 10 8 6 13 13 H 1.48499 * 109.46864 * 330.00158 * 10 8 6 14 14 C 1.46894 * 111.00085 * 70.10976 * 4 3 2 15 15 C 1.53002 * 109.47019 * 199.36317 * 14 4 3 16 16 H 1.08994 * 110.67266 * 309.19161 * 15 14 4 17 17 C 1.54890 * 110.75483 * 185.95662 * 15 14 4 18 18 C 1.54270 * 104.19582 * 203.56051 * 17 15 14 19 19 C 1.53880 * 106.59490 * 23.61132 * 18 17 15 20 20 F 1.39897 * 110.03313 * 119.28818 * 19 18 17 21 21 F 1.39909 * 110.02820 * 240.71368 * 19 18 17 22 22 C 1.54267 * 106.59949 * 359.97438 * 19 18 17 23 23 H 1.07991 * 120.00310 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99602 * 180.02562 * 1 2 3 25 25 H 1.07991 * 120.00310 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47298 * 4.99052 * 3 2 1 27 27 H 1.09003 * 109.46852 * 244.99495 * 3 2 1 28 28 H 1.09004 * 109.47177 * 191.57645 * 5 4 3 29 29 H 1.08998 * 109.47291 * 311.57843 * 5 4 3 30 30 H 0.97002 * 120.00280 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47001 * 79.36808 * 14 4 3 32 32 H 1.08998 * 109.47451 * 319.36568 * 14 4 3 33 33 H 1.09003 * 110.48800 * 84.88355 * 17 15 14 34 34 H 1.09004 * 110.48939 * 322.23761 * 17 15 14 35 35 H 1.08993 * 110.03333 * 264.32944 * 18 17 15 36 36 H 1.09003 * 110.03203 * 142.89285 * 18 17 15 37 37 H 1.08995 * 110.48281 * 95.06970 * 22 19 18 38 38 H 1.09005 * 110.47932 * 217.71352 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9962 1.3321 1.1346 5 6 3.5008 2.6917 1.3690 6 6 2.3993 3.5441 1.9446 7 1 1.4475 3.0996 2.1951 8 6 2.6068 4.8913 2.1514 9 7 3.7657 5.4327 1.8459 10 14 1.2412 5.9480 2.8643 11 1 1.3451 5.9580 4.3456 12 1 1.3689 7.3352 2.3498 13 1 -0.0758 5.3910 2.4641 14 6 4.1027 0.3881 0.9290 15 6 4.7659 0.0792 2.2727 16 1 5.0135 1.0003 2.8004 17 6 6.0285 -0.7956 2.0735 18 6 6.2152 -1.5051 3.4306 19 6 4.8348 -1.5236 4.1104 20 9 4.4276 -2.8434 4.3325 21 9 4.8885 -0.8276 5.3229 22 6 3.8577 -0.8241 3.1430 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0894 27 1 2.6213 1.4026 -0.9314 28 1 4.3348 2.6540 2.0697 29 1 3.8378 3.1218 0.4258 30 1 3.9118 6.3805 1.9917 31 1 4.8365 0.8296 0.2546 32 1 3.7175 -0.5339 0.4935 33 1 6.8931 -0.1716 1.8471 34 1 5.8656 -1.5256 1.2806 35 1 6.9267 -0.9539 4.0453 36 1 6.5677 -2.5245 3.2736 37 1 3.3441 -1.5584 2.5226 38 1 3.1382 -0.2214 3.6974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451063225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:26 Heat of formation + Delta-G solvation = -94.294016 kcal Electronic energy + Delta-G solvation = -20048.237506 eV Core-core repulsion = 16754.127505 eV Total energy + Delta-G solvation = -3294.110002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.70590 -46.78137 -38.22514 -36.17683 -33.20919 -32.26503 -29.57340 -28.28902 -27.09620 -25.09091 -23.40505 -21.09788 -20.75033 -19.86966 -18.95985 -17.37525 -16.54439 -16.52194 -15.75579 -15.10629 -14.75301 -14.54921 -14.23220 -14.01162 -13.66926 -13.57803 -13.13300 -12.88336 -12.45107 -12.40074 -12.05752 -11.84047 -11.62695 -11.34441 -11.31636 -10.91767 -10.85145 -10.68870 -10.60721 -10.38014 -10.35527 -10.12729 -9.79298 -9.24529 -8.95437 -8.43383 -7.26972 -6.03744 -4.04905 2.69839 3.31916 3.38151 3.41601 3.91451 4.15895 4.36548 4.42797 4.50904 4.91433 5.22274 5.28834 5.29663 5.31964 5.38435 5.56155 5.57149 5.62743 5.73913 5.86641 5.94498 5.97818 6.09607 6.11808 6.23718 6.24670 6.39487 6.53158 6.63495 7.00597 7.19445 7.26230 7.32061 7.81482 8.07962 8.15780 8.52264 9.03963 9.59825 11.06714 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.006243 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.976822 B = 4483.958343 C = 5213.162946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.063 3.937 15 C -0.082 4.082 16 H 0.094 0.906 17 C -0.118 4.118 18 C -0.161 4.161 19 C 0.274 3.726 20 F -0.207 7.207 21 F -0.200 7.200 22 C -0.140 4.140 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.028 0.972 28 H 0.030 0.970 29 H -0.005 1.005 30 H 0.261 0.739 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -13.513 -1.276 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.152 4.152 3 C -0.042 4.042 4 N -0.256 5.256 5 C 0.066 3.934 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.065 4.065 15 C -0.101 4.101 16 H 0.112 0.888 17 C -0.156 4.156 18 C -0.199 4.199 19 C 0.238 3.762 20 F -0.188 7.188 21 F -0.181 7.181 22 C -0.177 4.177 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.013 0.987 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.438 -13.484 -0.817 13.727 hybrid contribution -0.217 0.811 -0.045 0.841 sum 2.221 -12.673 -0.861 12.895 Atomic orbital electron populations 1.23708 0.95991 1.01226 1.02897 1.22998 0.95884 0.98435 0.97835 1.21143 0.96000 0.95321 0.91763 1.62124 1.14961 1.10129 1.38348 1.19789 0.95911 0.81990 0.95678 1.21164 0.99687 0.92440 1.41147 0.91839 1.24979 0.95736 0.97992 0.95854 1.69953 1.22913 1.12403 1.48616 0.86533 0.82293 0.79459 0.79360 1.20641 1.21366 1.19860 1.22009 0.93317 0.96760 0.94458 1.22093 0.92892 0.98265 0.96828 0.88819 1.22400 0.99071 0.98773 0.95364 1.23133 0.94681 1.03571 0.98505 1.22060 0.97470 0.74799 0.81839 1.92972 1.92184 1.38039 1.95619 1.93014 1.97430 1.79021 1.48611 1.23244 0.97640 0.99581 0.97280 0.88595 0.89298 0.88410 0.89243 0.95434 0.95218 0.98717 0.92958 0.95145 0.91952 0.90397 0.90884 0.89019 0.89298 0.89144 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 14.32 29.01 0.42 -2.47 16 2 C -0.13 -2.06 9.24 -36.03 -0.33 -2.39 16 3 C 0.09 1.59 5.25 -4.97 -0.03 1.56 16 4 N -0.53 -10.67 4.29 -237.51 -1.02 -11.68 16 5 C 0.19 4.74 4.55 -4.97 -0.02 4.71 16 6 C -0.51 -13.84 8.33 -34.44 -0.29 -14.12 16 7 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 14 C 0.06 1.03 4.27 -3.83 -0.02 1.01 16 15 C -0.08 -1.23 2.93 -88.64 -0.26 -1.49 16 16 H 0.09 1.67 6.65 -51.93 -0.35 1.33 16 17 C -0.12 -1.37 6.27 -25.07 -0.16 -1.53 16 18 C -0.16 -1.84 6.50 -25.61 -0.17 -2.01 16 19 C 0.27 3.89 2.57 -25.61 -0.07 3.83 16 20 F -0.21 -3.03 17.04 2.25 0.04 -2.99 16 21 F -0.20 -3.26 17.04 2.25 0.04 -3.22 16 22 C -0.14 -2.06 5.80 -25.09 -0.15 -2.21 16 23 H 0.10 1.42 7.84 -52.49 -0.41 1.01 16 24 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.10 1.36 6.95 -52.49 -0.36 0.99 16 26 H 0.09 1.86 6.78 -51.93 -0.35 1.51 16 27 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.03 0.78 6.48 -51.93 -0.34 0.44 16 29 H -0.01 -0.14 8.06 -51.93 -0.42 -0.55 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.06 0.89 6.24 -51.93 -0.32 0.56 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.09 1.01 8.02 -51.93 -0.42 0.59 16 36 H 0.09 0.87 8.02 -51.93 -0.42 0.45 16 37 H 0.09 1.23 7.91 -51.93 -0.41 0.82 16 38 H 0.10 1.69 8.11 -51.93 -0.42 1.26 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -28.91 315.45 -7.49 -36.40 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.86 Total: -0.57 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.16 Total: -13.66 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.28 Total: -37.21 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.08 Total: -6.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.91 -7.49 -36.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451063225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.891 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds