Wall clock time and date at job start Mon Mar 30 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99686 * 2 1 4 4 N 1.46900 * 109.47075 * 124.99612 * 3 2 1 5 5 C 1.46903 * 110.99532 * 194.06356 * 4 3 2 6 6 C 1.50700 * 109.47454 * 71.58027 * 5 4 3 7 7 H 1.08000 * 119.99758 * 5.05067 * 6 5 4 8 8 C 1.37870 * 120.00316 * 185.05413 * 6 5 4 9 9 N 1.31516 * 120.00016 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00314 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47102 * 90.00027 * 10 8 6 12 12 H 1.48496 * 109.47290 * 210.00123 * 10 8 6 13 13 H 1.48499 * 109.46864 * 330.00158 * 10 8 6 14 14 C 1.46894 * 111.00085 * 70.10976 * 4 3 2 15 15 C 1.53002 * 109.47019 * 199.36317 * 14 4 3 16 16 H 1.08994 * 110.67266 * 309.19161 * 15 14 4 17 17 C 1.54890 * 110.75483 * 185.95662 * 15 14 4 18 18 C 1.54270 * 104.19582 * 203.56051 * 17 15 14 19 19 C 1.53880 * 106.59490 * 23.61132 * 18 17 15 20 20 F 1.39897 * 110.03313 * 119.28818 * 19 18 17 21 21 F 1.39909 * 110.02820 * 240.71368 * 19 18 17 22 22 C 1.54267 * 106.59949 * 359.97438 * 19 18 17 23 23 H 1.07991 * 120.00310 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99602 * 180.02562 * 1 2 3 25 25 H 1.07991 * 120.00310 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47298 * 4.99052 * 3 2 1 27 27 H 1.09003 * 109.46852 * 244.99495 * 3 2 1 28 28 H 1.09004 * 109.47177 * 191.57645 * 5 4 3 29 29 H 1.08998 * 109.47291 * 311.57843 * 5 4 3 30 30 H 0.97002 * 120.00280 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47001 * 79.36808 * 14 4 3 32 32 H 1.08998 * 109.47451 * 319.36568 * 14 4 3 33 33 H 1.09003 * 110.48800 * 84.88355 * 17 15 14 34 34 H 1.09004 * 110.48939 * 322.23761 * 17 15 14 35 35 H 1.08993 * 110.03333 * 264.32944 * 18 17 15 36 36 H 1.09003 * 110.03203 * 142.89285 * 18 17 15 37 37 H 1.08995 * 110.48281 * 95.06970 * 22 19 18 38 38 H 1.09005 * 110.47932 * 217.71352 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9962 1.3321 1.1346 5 6 3.5008 2.6917 1.3690 6 6 2.3993 3.5441 1.9446 7 1 1.4475 3.0996 2.1951 8 6 2.6068 4.8913 2.1514 9 7 3.7657 5.4327 1.8459 10 14 1.2412 5.9480 2.8643 11 1 1.3451 5.9580 4.3456 12 1 1.3689 7.3352 2.3498 13 1 -0.0758 5.3910 2.4641 14 6 4.1027 0.3881 0.9290 15 6 4.7659 0.0792 2.2727 16 1 5.0135 1.0003 2.8004 17 6 6.0285 -0.7956 2.0735 18 6 6.2152 -1.5051 3.4306 19 6 4.8348 -1.5236 4.1104 20 9 4.4276 -2.8434 4.3325 21 9 4.8885 -0.8276 5.3229 22 6 3.8577 -0.8241 3.1430 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0894 27 1 2.6213 1.4026 -0.9314 28 1 4.3348 2.6540 2.0697 29 1 3.8378 3.1218 0.4258 30 1 3.9118 6.3805 1.9917 31 1 4.8365 0.8296 0.2546 32 1 3.7175 -0.5339 0.4935 33 1 6.8931 -0.1716 1.8471 34 1 5.8656 -1.5256 1.2806 35 1 6.9267 -0.9539 4.0453 36 1 6.5677 -2.5245 3.2736 37 1 3.3441 -1.5584 2.5226 38 1 3.1382 -0.2214 3.6974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451063225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:26 Heat of formation + Delta-G solvation = -110.454737 kcal Electronic energy + Delta-G solvation = -20048.938288 eV Core-core repulsion = 16754.127505 eV Total energy + Delta-G solvation = -3294.810783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87597 -47.96573 -39.57067 -37.51536 -34.98502 -33.89724 -30.87968 -29.48701 -28.87929 -26.47004 -25.12814 -22.63643 -21.82690 -21.16244 -20.27368 -18.65109 -18.44856 -17.68526 -17.08509 -16.69526 -16.32932 -15.89054 -15.58675 -15.32245 -15.07846 -14.79556 -14.33414 -14.21805 -14.07142 -13.88344 -13.54887 -13.36732 -12.99926 -12.69867 -12.69445 -12.51216 -12.37391 -12.11988 -12.03679 -11.82568 -11.71972 -11.48346 -11.31996 -11.17178 -10.58418 -10.22787 -8.93239 -8.19202 -6.28179 1.39450 1.40555 1.49020 1.51484 2.39981 2.83451 3.04313 3.13175 3.24825 3.42671 3.53907 4.02770 4.10649 4.25606 4.27708 4.34614 4.39003 4.50538 4.57548 4.67981 4.73724 4.85986 4.89809 4.94960 4.97014 5.06728 5.09144 5.24845 5.28183 5.30245 5.43110 5.68142 5.78443 6.03736 6.11468 6.38716 6.68938 6.88893 7.41387 8.90878 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.006243 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.976822 B = 4483.958343 C = 5213.162946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C 0.086 3.914 4 N -0.537 5.537 5 C 0.209 3.791 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.064 3.936 15 C -0.083 4.083 16 H 0.055 0.945 17 C -0.107 4.107 18 C -0.153 4.153 19 C 0.269 3.731 20 F -0.208 7.208 21 F -0.217 7.217 22 C -0.136 4.136 23 H 0.085 0.915 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.009 0.991 29 H -0.036 1.036 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -15.513 -1.620 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.162 4.162 3 C -0.041 4.041 4 N -0.261 5.261 5 C 0.082 3.918 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.064 4.064 15 C -0.102 4.102 16 H 0.074 0.926 17 C -0.145 4.145 18 C -0.191 4.191 19 C 0.233 3.767 20 F -0.189 7.189 21 F -0.198 7.198 22 C -0.174 4.174 23 H 0.103 0.897 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.027 0.973 29 H -0.019 1.019 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.013 -15.506 -1.165 15.679 hybrid contribution -0.128 1.405 0.045 1.412 sum 1.885 -14.100 -1.120 14.270 Atomic orbital electron populations 1.23922 0.95725 1.02213 1.00702 1.22889 0.96176 0.97401 0.99738 1.21096 0.95366 0.96499 0.91169 1.62051 1.16405 1.07999 1.39619 1.19391 0.94596 0.84458 0.93306 1.21461 0.99994 0.93211 1.41044 0.92416 1.25823 0.98043 0.99369 0.96198 1.70069 1.24803 1.12797 1.49721 0.85505 0.79564 0.77740 0.78576 1.20167 1.20713 1.18999 1.22130 0.92194 0.96772 0.95299 1.21995 0.94925 0.97527 0.95783 0.92607 1.22379 0.97184 0.98625 0.96321 1.23137 0.92821 1.05232 0.97864 1.22294 0.98928 0.74416 0.81095 1.92969 1.92372 1.37930 1.95598 1.92982 1.97554 1.79501 1.49768 1.23172 0.97300 0.99535 0.97362 0.89675 0.86232 0.85889 0.92355 0.95361 0.97311 1.01855 0.92797 0.95542 0.88813 0.89655 0.88300 0.88680 0.86613 0.87312 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.98 14.32 67.78 0.97 -4.01 16 2 C -0.14 -4.16 9.24 25.65 0.24 -3.93 16 3 C 0.09 3.22 5.25 85.56 0.45 3.67 16 4 N -0.54 -21.92 4.29 -905.35 -3.88 -25.80 16 5 C 0.21 10.84 4.55 85.56 0.39 11.23 16 6 C -0.52 -29.35 8.33 25.60 0.21 -29.13 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -56.06 13.29 21.44 0.28 -55.78 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.06 2.03 4.27 86.31 0.37 2.40 16 15 C -0.08 -2.47 2.93 -9.51 -0.03 -2.50 16 16 H 0.06 2.08 6.65 -2.39 -0.02 2.07 16 17 C -0.11 -2.22 6.27 31.67 0.20 -2.02 16 18 C -0.15 -3.10 6.50 31.32 0.20 -2.90 16 19 C 0.27 7.25 2.57 31.32 0.08 7.33 16 20 F -0.21 -5.63 17.04 44.97 0.77 -4.87 16 21 F -0.22 -7.06 17.04 44.97 0.77 -6.30 16 22 C -0.14 -3.89 5.80 31.66 0.18 -3.71 16 23 H 0.08 2.43 7.84 -2.92 -0.02 2.41 16 24 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 25 H 0.12 2.96 6.95 -2.92 -0.02 2.94 16 26 H 0.06 2.51 6.78 -2.39 -0.02 2.49 16 27 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.01 0.49 6.48 -2.39 -0.02 0.48 16 29 H -0.04 -2.07 8.06 -2.39 -0.02 -2.09 16 30 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.03 0.87 8.00 -2.38 -0.02 0.85 16 32 H 0.09 2.40 6.24 -2.39 -0.01 2.38 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.59 8.05 -2.39 -0.02 1.57 16 35 H 0.09 1.90 8.02 -2.39 -0.02 1.88 16 36 H 0.12 1.79 8.02 -2.39 -0.02 1.77 16 37 H 0.11 2.69 7.91 -2.39 -0.02 2.67 16 38 H 0.07 2.44 8.11 -2.38 -0.02 2.42 16 Total: -1.00 -64.41 315.45 4.72 -59.69 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.03 Total: 9.17 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 3.73 Total: -22.90 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.60 Total: -81.58 kcal Atomic # 9 Polarization: -12.70 SS G_CDS: 1.53 Total: -11.16 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.41 4.72 -59.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451063225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.763 kcal (2) G-P(sol) polarization free energy of solvation -64.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds