Wall clock time and date at job start Mon Mar 30 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 112.85343 * 2 1 4 4 C 1.53786 * 113.61324 * 131.19430 * 2 1 3 5 5 C 1.53779 * 87.08206 * 89.11426 * 4 2 1 6 6 C 1.53004 * 113.61389 * 139.98439 * 5 4 2 7 7 N 1.46497 * 109.46928 * 176.53304 * 6 5 4 8 8 C 1.39690 * 119.99690 * 180.02562 * 7 6 5 9 9 C 1.39329 * 119.95095 * 359.97438 * 8 7 6 10 10 C 1.38477 * 120.42149 * 180.02562 * 9 8 7 11 11 C 1.37679 * 120.32786 * 0.02562 * 10 9 8 12 12 C 1.40756 * 119.89414 * 359.97438 * 11 10 9 13 13 C 1.41407 * 120.20989 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00205 * 335.31512 * 13 12 11 15 15 C 1.39929 * 120.00038 * 155.30774 * 13 12 11 16 16 N 1.30833 * 119.99918 * 342.18764 * 15 13 12 17 17 Si 1.86795 * 120.00335 * 162.18911 * 15 13 12 18 18 H 1.48507 * 109.46808 * 89.99996 * 17 15 13 19 19 H 1.48491 * 109.47315 * 209.99948 * 17 15 13 20 20 H 1.48496 * 109.46957 * 330.00678 * 17 15 13 21 21 C 1.38284 * 119.94947 * 179.97438 * 8 7 6 22 22 C 1.53781 * 87.17139 * 25.39124 * 5 4 2 23 23 H 1.08999 * 109.47511 * 288.81052 * 1 2 3 24 24 H 1.09005 * 109.46855 * 48.80893 * 1 2 3 25 25 H 1.09001 * 109.47558 * 168.80591 * 1 2 3 26 26 H 1.09001 * 109.47444 * 191.19674 * 3 2 1 27 27 H 1.09003 * 109.47164 * 311.19245 * 3 2 1 28 28 H 1.08996 * 109.47221 * 71.19140 * 3 2 1 29 29 H 1.09005 * 113.61263 * 334.56835 * 4 2 1 30 30 H 1.08999 * 113.61890 * 203.66544 * 4 2 1 31 31 H 1.09000 * 113.61457 * 270.80022 * 5 4 2 32 32 H 1.08996 * 109.47065 * 56.52584 * 6 5 4 33 33 H 1.09004 * 109.46483 * 296.52948 * 6 5 4 34 34 H 0.96996 * 120.00169 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.79209 * 0.02562 * 9 8 7 36 36 H 1.08003 * 119.83800 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.05544 * 179.97438 * 11 10 9 38 38 H 0.96997 * 120.00450 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.15790 * 0.27631 * 21 8 7 40 40 H 1.09000 * 113.61450 * 89.15862 * 22 5 4 41 41 H 1.09003 * 113.61431 * 220.05583 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1459 -0.9281 1.0603 5 6 2.0928 -2.0426 0.0021 6 6 3.3263 -2.9479 0.0031 7 7 3.1449 -4.0213 -0.9772 8 6 4.1455 -4.9792 -1.1572 9 6 5.3159 -4.9125 -0.4041 10 6 6.3144 -5.8567 -0.5749 11 6 6.1615 -6.8721 -1.4920 12 6 4.9846 -6.9525 -2.2600 13 6 4.8203 -7.9930 -3.2034 14 1 5.6865 -8.4748 -3.6323 15 6 3.5354 -8.3984 -3.5812 16 7 2.5055 -8.0845 -2.8379 17 14 3.2906 -9.3878 -5.1465 18 1 3.3872 -10.8369 -4.8363 19 1 1.9513 -9.0915 -5.7151 20 1 4.3391 -9.0219 -6.1324 21 6 3.9731 -5.9923 -2.0825 22 6 2.1448 -0.9318 -1.0601 23 1 -0.3634 0.3313 0.9727 24 1 -0.3633 0.6768 -0.7734 25 1 -0.3634 -1.0081 -0.1995 26 1 3.1942 1.3532 -0.1995 27 1 1.6415 2.0075 -0.7733 28 1 1.9599 1.8733 0.9727 29 1 1.4944 -1.1068 1.9157 30 1 3.1590 -0.6486 1.3497 31 1 1.1573 -2.6019 0.0037 32 1 3.4589 -3.3801 0.9949 33 1 4.2073 -2.3618 -0.2586 34 1 2.3297 -4.0673 -1.5008 35 1 5.4452 -4.1194 0.3174 36 1 7.2180 -5.7957 0.0135 37 1 6.9432 -7.6059 -1.6219 38 1 1.6147 -8.3652 -3.0999 39 1 3.0682 -6.0424 -2.6699 40 1 3.1575 -0.6534 -1.3516 41 1 1.4923 -1.1136 -1.9142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530112676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:33 Heat of formation + Delta-G solvation = 19.831830 kcal Electronic energy + Delta-G solvation = -18751.459686 eV Core-core repulsion = 16016.528082 eV Total energy + Delta-G solvation = -2734.931604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.87713 -37.63685 -34.81190 -33.23922 -31.17028 -29.37752 -28.09047 -27.57726 -25.78209 -25.18420 -24.78634 -21.37543 -20.27314 -19.77793 -18.31281 -17.13546 -15.87660 -15.42878 -14.88154 -14.73386 -14.46440 -14.17789 -13.84954 -13.69767 -12.95550 -12.82532 -12.72320 -12.50449 -12.17026 -11.94922 -11.89686 -11.56949 -11.46184 -11.18179 -10.96620 -10.78887 -10.58452 -10.50291 -10.35753 -10.10259 -9.98658 -9.53538 -9.38963 -9.16753 -8.67858 -7.25395 -6.68110 -6.08630 -4.26089 2.91009 3.12114 3.17327 3.28716 3.39005 4.01457 4.24733 4.43080 4.60040 4.63077 4.77249 4.94803 5.09736 5.37074 5.46403 5.47360 5.60904 5.66953 5.72640 5.77545 5.81723 5.86492 5.88530 5.98290 6.03045 6.18328 6.19869 6.32779 6.41162 6.55392 6.64840 6.94132 7.17433 7.19289 7.43563 7.50929 7.88047 8.02315 8.16993 8.22903 8.54982 8.79612 8.90148 9.06659 9.18283 10.30639 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.004202 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.717696 B = 6662.114607 C = 7461.431312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.122 4.122 5 C -0.120 4.120 6 C 0.148 3.852 7 N -0.759 5.759 8 C 0.216 3.784 9 C -0.300 4.300 10 C -0.066 4.066 11 C -0.259 4.259 12 C 0.139 3.861 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.793 5.793 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.261 1.261 21 C -0.232 4.232 22 C -0.124 4.124 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.389 0.611 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.277 0.723 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 13.724 4.176 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.192 4.192 4 C -0.160 4.160 5 C -0.138 4.138 6 C 0.023 3.977 7 N -0.393 5.393 8 C 0.117 3.883 9 C -0.322 4.322 10 C -0.085 4.085 11 C -0.279 4.279 12 C 0.136 3.864 13 C -0.496 4.496 14 H 0.094 0.906 15 C -0.139 4.139 16 N -0.419 5.419 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.185 1.185 21 C -0.256 4.256 22 C -0.161 4.161 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.222 0.778 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.815 13.801 4.345 15.249 hybrid contribution -0.510 -0.563 -0.786 1.093 sum -5.325 13.239 3.559 14.706 Atomic orbital electron populations 1.21590 0.93398 1.01977 1.01532 1.21823 0.95403 0.94399 0.97606 1.21720 1.00571 0.95541 1.01347 1.23019 1.01141 0.95505 0.96362 1.22708 0.99176 0.94761 0.97177 1.21015 0.95725 0.88319 0.92637 1.44407 1.20287 1.29500 1.45091 1.17668 0.87642 0.88491 0.94504 1.19879 0.97051 1.05619 1.09691 1.20278 0.96297 0.94769 0.97189 1.20856 1.01052 1.02248 1.03750 1.17313 0.89944 0.90167 0.88970 1.19538 0.92495 1.16183 1.21383 0.90649 1.25864 0.95742 0.95359 0.96924 1.69874 1.00170 1.37514 1.34335 0.86413 0.78412 0.80038 0.82399 1.19631 1.20262 1.18547 1.20704 1.03218 0.96897 1.04755 1.23162 1.01123 0.95448 0.96398 0.92583 0.92576 0.92316 0.92519 0.92841 0.92791 0.91551 0.89940 0.89069 0.93551 0.93467 0.77844 0.89737 0.89705 0.89443 0.91263 0.86650 0.89958 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.07 37.15 0.34 -0.81 16 2 C -0.09 -0.90 1.39 -153.61 -0.21 -1.12 16 3 C -0.13 -1.18 9.20 37.15 0.34 -0.84 16 4 C -0.12 -1.28 6.79 -25.92 -0.18 -1.46 16 5 C -0.12 -1.49 3.40 -89.81 -0.31 -1.79 16 6 C 0.15 2.35 4.73 -4.04 -0.02 2.33 16 7 N -0.76 -14.82 5.73 -58.68 -0.34 -15.16 16 8 C 0.22 5.17 6.64 -83.85 -0.56 4.62 16 9 C -0.30 -7.03 9.32 -39.09 -0.36 -7.39 16 10 C -0.07 -1.58 10.01 -39.70 -0.40 -1.98 16 11 C -0.26 -6.70 9.79 -38.83 -0.38 -7.08 16 12 C 0.14 3.87 5.57 -106.85 -0.60 3.27 16 13 C -0.47 -12.82 9.05 -37.74 -0.34 -13.16 16 14 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 15 C 0.08 2.02 5.14 -17.34 -0.09 1.94 16 16 N -0.79 -21.03 10.97 55.55 0.61 -20.42 16 17 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.23 -6.20 8.52 -38.68 -0.33 -6.53 16 22 C -0.12 -1.43 6.76 -25.83 -0.17 -1.60 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.55 7.34 -51.93 -0.38 0.17 16 26 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 32 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 33 H 0.05 0.76 7.68 -51.93 -0.40 0.36 16 34 H 0.39 7.25 8.48 -40.82 -0.35 6.90 16 35 H 0.08 1.79 6.70 -52.49 -0.35 1.44 16 36 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 39 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 40 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 41 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -28.36 329.84 -9.83 -38.19 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.77 Total: 9.90 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -3.26 Total: -31.60 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.27 Total: -35.58 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.36 -9.83 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530112676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.020 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds