Wall clock time and date at job start Mon Mar 30 2020 07:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 112.85343 * 2 1 4 4 C 1.53786 * 113.61324 * 131.19430 * 2 1 3 5 5 C 1.53779 * 87.08206 * 89.11426 * 4 2 1 6 6 C 1.53004 * 113.61389 * 139.98439 * 5 4 2 7 7 N 1.46497 * 109.46928 * 176.53304 * 6 5 4 8 8 C 1.39690 * 119.99690 * 180.02562 * 7 6 5 9 9 C 1.39329 * 119.95095 * 359.97438 * 8 7 6 10 10 C 1.38477 * 120.42149 * 180.02562 * 9 8 7 11 11 C 1.37679 * 120.32786 * 0.02562 * 10 9 8 12 12 C 1.40756 * 119.89414 * 359.97438 * 11 10 9 13 13 C 1.41407 * 120.20989 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00205 * 335.31512 * 13 12 11 15 15 C 1.39929 * 120.00038 * 155.30774 * 13 12 11 16 16 N 1.30833 * 119.99918 * 342.18764 * 15 13 12 17 17 Si 1.86795 * 120.00335 * 162.18911 * 15 13 12 18 18 H 1.48507 * 109.46808 * 89.99996 * 17 15 13 19 19 H 1.48491 * 109.47315 * 209.99948 * 17 15 13 20 20 H 1.48496 * 109.46957 * 330.00678 * 17 15 13 21 21 C 1.38284 * 119.94947 * 179.97438 * 8 7 6 22 22 C 1.53781 * 87.17139 * 25.39124 * 5 4 2 23 23 H 1.08999 * 109.47511 * 288.81052 * 1 2 3 24 24 H 1.09005 * 109.46855 * 48.80893 * 1 2 3 25 25 H 1.09001 * 109.47558 * 168.80591 * 1 2 3 26 26 H 1.09001 * 109.47444 * 191.19674 * 3 2 1 27 27 H 1.09003 * 109.47164 * 311.19245 * 3 2 1 28 28 H 1.08996 * 109.47221 * 71.19140 * 3 2 1 29 29 H 1.09005 * 113.61263 * 334.56835 * 4 2 1 30 30 H 1.08999 * 113.61890 * 203.66544 * 4 2 1 31 31 H 1.09000 * 113.61457 * 270.80022 * 5 4 2 32 32 H 1.08996 * 109.47065 * 56.52584 * 6 5 4 33 33 H 1.09004 * 109.46483 * 296.52948 * 6 5 4 34 34 H 0.96996 * 120.00169 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.79209 * 0.02562 * 9 8 7 36 36 H 1.08003 * 119.83800 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.05544 * 179.97438 * 11 10 9 38 38 H 0.96997 * 120.00450 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.15790 * 0.27631 * 21 8 7 40 40 H 1.09000 * 113.61450 * 89.15862 * 22 5 4 41 41 H 1.09003 * 113.61431 * 220.05583 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1459 -0.9281 1.0603 5 6 2.0928 -2.0426 0.0021 6 6 3.3263 -2.9479 0.0031 7 7 3.1449 -4.0213 -0.9772 8 6 4.1455 -4.9792 -1.1572 9 6 5.3159 -4.9125 -0.4041 10 6 6.3144 -5.8567 -0.5749 11 6 6.1615 -6.8721 -1.4920 12 6 4.9846 -6.9525 -2.2600 13 6 4.8203 -7.9930 -3.2034 14 1 5.6865 -8.4748 -3.6323 15 6 3.5354 -8.3984 -3.5812 16 7 2.5055 -8.0845 -2.8379 17 14 3.2906 -9.3878 -5.1465 18 1 3.3872 -10.8369 -4.8363 19 1 1.9513 -9.0915 -5.7151 20 1 4.3391 -9.0219 -6.1324 21 6 3.9731 -5.9923 -2.0825 22 6 2.1448 -0.9318 -1.0601 23 1 -0.3634 0.3313 0.9727 24 1 -0.3633 0.6768 -0.7734 25 1 -0.3634 -1.0081 -0.1995 26 1 3.1942 1.3532 -0.1995 27 1 1.6415 2.0075 -0.7733 28 1 1.9599 1.8733 0.9727 29 1 1.4944 -1.1068 1.9157 30 1 3.1590 -0.6486 1.3497 31 1 1.1573 -2.6019 0.0037 32 1 3.4589 -3.3801 0.9949 33 1 4.2073 -2.3618 -0.2586 34 1 2.3297 -4.0673 -1.5008 35 1 5.4452 -4.1194 0.3174 36 1 7.2180 -5.7957 0.0135 37 1 6.9432 -7.6059 -1.6219 38 1 1.6147 -8.3652 -3.0999 39 1 3.0682 -6.0424 -2.6699 40 1 3.1575 -0.6534 -1.3516 41 1 1.4923 -1.1136 -1.9142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530112676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:32 Heat of formation + Delta-G solvation = 6.236725 kcal Electronic energy + Delta-G solvation = -18752.049214 eV Core-core repulsion = 16016.528082 eV Total energy + Delta-G solvation = -2735.521132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82485 -39.46363 -36.48478 -35.08817 -32.32652 -31.34339 -29.63123 -28.27205 -27.14924 -26.67374 -26.19683 -23.08769 -21.81934 -21.38980 -19.24019 -18.97080 -17.59368 -16.72190 -16.47435 -16.34297 -15.88460 -15.28345 -15.07056 -14.75905 -14.50121 -14.37895 -13.99988 -13.80512 -13.61710 -13.36741 -13.00482 -12.76255 -12.70670 -12.68372 -12.51309 -12.27775 -12.08114 -11.81586 -11.55861 -11.43235 -11.29646 -11.07554 -10.93439 -10.84482 -10.44451 -9.25179 -8.61744 -7.89476 -6.31866 1.08932 1.33637 1.38509 1.51236 1.59257 2.23449 2.79790 2.85078 3.57843 3.70117 3.73051 3.85704 3.91213 4.27278 4.43105 4.47101 4.52785 4.70029 4.76539 4.79571 4.82541 4.87388 4.91990 4.97686 5.00364 5.02787 5.05105 5.20058 5.20444 5.26651 5.30534 5.32003 5.44878 5.56334 5.60830 5.66636 5.96915 6.11218 6.21589 6.27129 6.58630 6.94884 7.05815 7.07940 7.26174 8.38866 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.004202 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.717696 B = 6662.114607 C = 7461.431312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.148 3.852 7 N -0.753 5.753 8 C 0.218 3.782 9 C -0.304 4.304 10 C -0.062 4.062 11 C -0.287 4.287 12 C 0.109 3.891 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.260 4.260 22 C -0.127 4.127 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.391 0.609 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.285 0.715 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 15.046 4.646 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 C -0.191 4.191 4 C -0.154 4.154 5 C -0.137 4.137 6 C 0.024 3.976 7 N -0.385 5.385 8 C 0.117 3.883 9 C -0.327 4.327 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.106 3.894 13 C -0.535 4.535 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.449 5.449 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.285 4.285 22 C -0.164 4.164 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.224 0.776 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.370 15.159 4.840 16.795 hybrid contribution -0.335 -0.889 -0.837 1.266 sum -5.706 14.271 4.003 15.882 Atomic orbital electron populations 1.21605 0.92676 1.01810 1.02444 1.21788 0.95910 0.94692 0.96017 1.21712 1.00368 0.94794 1.02198 1.23022 1.01766 0.94304 0.96291 1.22678 0.97349 0.94627 0.99070 1.21202 0.97599 0.87589 0.91230 1.44545 1.19302 1.29247 1.45402 1.17812 0.88736 0.88409 0.93373 1.20215 0.96567 1.06123 1.09795 1.20649 0.97493 0.93640 0.96321 1.21029 1.01006 1.03698 1.04985 1.17712 0.91098 0.90819 0.89755 1.19808 0.93481 1.17321 1.22933 0.91000 1.26720 0.94820 0.96247 0.99939 1.69929 1.00803 1.38289 1.35843 0.85258 0.78623 0.78483 0.77617 1.18683 1.19004 1.18432 1.20641 1.02883 0.98471 1.06482 1.23176 1.00989 0.95741 0.96531 0.91476 0.91916 0.93037 0.92765 0.92290 0.91724 0.90627 0.89496 0.89297 0.93850 0.93334 0.77560 0.87129 0.86349 0.89142 0.90460 0.88341 0.90511 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.07 71.98 0.65 -1.36 16 2 C -0.08 -1.46 1.39 -51.60 -0.07 -1.53 16 3 C -0.13 -2.00 9.20 71.98 0.66 -1.34 16 4 C -0.12 -2.16 6.79 31.12 0.21 -1.95 16 5 C -0.12 -2.78 3.40 -10.27 -0.03 -2.81 16 6 C 0.15 4.49 4.73 86.38 0.41 4.90 16 7 N -0.75 -29.20 5.73 -339.57 -1.95 -31.15 16 8 C 0.22 10.50 6.64 38.16 0.25 10.76 16 9 C -0.30 -13.94 9.32 22.59 0.21 -13.73 16 10 C -0.06 -2.92 10.01 22.19 0.22 -2.70 16 11 C -0.29 -15.13 9.79 22.75 0.22 -14.90 16 12 C 0.11 6.27 5.57 -21.31 -0.12 6.16 16 13 C -0.51 -28.83 9.05 23.46 0.21 -28.62 16 14 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 15 C 0.04 1.97 5.14 85.25 0.44 2.41 16 16 N -0.82 -44.63 10.97 21.82 0.24 -44.39 16 17 Si 0.98 39.67 29.59 68.60 2.03 41.70 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 C -0.26 -14.37 8.52 22.86 0.19 -14.17 16 22 C -0.13 -2.75 6.76 31.18 0.21 -2.54 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.05 0.88 7.34 -2.39 -0.02 0.86 16 26 H 0.05 0.84 7.96 -2.39 -0.02 0.82 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.29 8.10 -2.38 -0.02 1.28 16 30 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16 31 H 0.09 2.15 7.66 -2.39 -0.02 2.13 16 32 H 0.04 1.36 7.94 -2.39 -0.02 1.34 16 33 H 0.05 1.48 7.68 -2.39 -0.02 1.47 16 34 H 0.39 14.69 8.48 -92.71 -0.79 13.90 16 35 H 0.11 4.43 6.70 -2.91 -0.02 4.41 16 36 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 39 H 0.10 5.65 6.18 -2.91 -0.02 5.64 16 40 H 0.08 1.75 7.75 -2.39 -0.02 1.73 16 41 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -61.94 329.84 4.21 -57.74 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.21 Total: 37.53 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 3.67 Total: -61.43 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.71 Total: -75.54 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -61.94 4.21 -57.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530112676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.972 kcal (2) G-P(sol) polarization free energy of solvation -61.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds