Wall clock time and date at job start Mon Mar 30 2020 07:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00331 * 2 1 4 4 H 1.48500 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47230 * 300.00262 * 3 2 1 6 6 H 1.48497 * 109.47267 * 59.99906 * 3 2 1 7 7 C 1.37880 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00411 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47458 * 180.02562 * 11 10 9 13 13 C 1.51587 * 108.49360 * 60.12741 * 12 11 10 14 14 C 1.53071 * 110.94547 * 189.42524 * 13 12 11 15 15 C 1.51462 * 108.24032 * 274.31871 * 14 13 12 16 16 C 1.38381 * 119.51961 * 250.27615 * 15 14 13 17 17 C 1.38300 * 119.61547 * 180.24771 * 16 15 14 18 18 C 1.38260 * 120.05276 * 0.27256 * 17 16 15 19 19 C 1.38293 * 120.05888 * 0.02562 * 18 17 16 20 20 C 1.37045 * 120.13906 * 71.10872 * 15 14 13 21 21 C 1.51450 * 120.16652 * 359.50001 * 20 15 14 22 22 C 1.51588 * 108.48902 * 185.00036 * 12 11 10 23 23 H 0.96996 * 119.99662 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47149 * 60.00281 * 9 7 2 25 25 H 1.08999 * 109.47263 * 300.00115 * 9 7 2 26 26 H 1.00903 * 111.00133 * 303.95319 * 10 9 7 27 27 H 1.08995 * 109.46756 * 59.99367 * 11 10 9 28 28 H 1.09000 * 109.46521 * 300.00278 * 11 10 9 29 29 H 1.09005 * 108.41943 * 302.64019 * 12 11 10 30 30 H 1.08997 * 109.18373 * 309.80425 * 13 12 11 31 31 H 1.09000 * 109.18342 * 69.09541 * 13 12 11 32 32 H 1.09000 * 109.63373 * 34.08160 * 14 13 12 33 33 H 1.08998 * 109.63882 * 154.70273 * 14 13 12 34 34 H 1.08002 * 120.19523 * 0.53045 * 16 15 14 35 35 H 1.07999 * 119.97270 * 180.30167 * 17 16 15 36 36 H 1.07998 * 119.96819 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.18804 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.63886 * 49.24574 * 21 20 15 39 39 H 1.09003 * 109.64062 * 169.65385 * 21 20 15 40 40 H 1.09003 * 109.18682 * 50.23121 * 22 12 11 41 41 H 1.08993 * 109.14704 * 290.94942 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 0.0001 12 6 2.5301 -6.0431 0.0007 13 6 3.3837 -5.9199 1.2473 14 6 4.5731 -6.8819 1.1933 15 6 4.1189 -8.2273 1.7204 16 6 4.5855 -8.6728 2.9447 17 6 4.1761 -9.9032 3.4255 18 6 3.3101 -10.6837 2.6823 19 6 2.8521 -10.2357 1.4567 20 6 3.2655 -9.0037 0.9808 21 6 2.7633 -8.5156 -0.3621 22 6 1.7887 -7.3595 -0.1240 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8404 -3.5488 -0.7819 27 1 0.8800 -4.9817 -0.8896 28 1 0.8806 -4.9812 0.8903 29 1 3.1750 -5.9257 -0.8702 30 1 3.7533 -4.8977 1.3287 31 1 2.7760 -6.1516 2.1219 32 1 4.9145 -6.9849 0.1633 33 1 5.3828 -6.4987 1.8142 34 1 5.2619 -8.0612 3.5234 35 1 4.5329 -10.2544 4.3825 36 1 2.9909 -11.6441 3.0593 37 1 2.1753 -10.8435 0.8747 38 1 3.6036 -8.1686 -0.9634 39 1 2.2532 -9.3281 -0.8798 40 1 1.0919 -7.3004 -0.9601 41 1 1.2314 -7.5442 0.7943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530236820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:33 Heat of formation + Delta-G solvation = -4.133444 kcal Electronic energy + Delta-G solvation = -18867.041859 eV Core-core repulsion = 16131.071043 eV Total energy + Delta-G solvation = -2735.970816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13200 -37.30975 -34.68417 -33.03686 -32.59998 -31.09204 -29.57329 -27.51042 -25.54262 -23.88799 -22.86397 -22.10079 -21.20013 -20.01062 -19.78904 -16.66388 -16.42318 -15.58107 -15.09778 -14.83470 -14.56643 -14.31505 -14.03020 -13.77353 -13.32586 -12.94471 -12.82103 -12.62985 -12.29501 -12.18920 -11.91957 -11.57640 -11.32417 -11.26387 -10.91839 -10.80605 -10.73994 -10.47241 -10.30542 -10.18291 -10.15780 -9.80232 -9.13310 -8.80844 -8.53224 -8.46868 -7.24006 -6.01970 -4.03759 1.35022 1.37683 3.31610 3.38792 3.43881 3.74492 4.43987 4.64498 4.73282 4.89395 4.93524 4.95956 5.11381 5.13598 5.33994 5.35161 5.39926 5.52549 5.57885 5.64410 5.69672 5.74045 5.89159 5.95421 6.01473 6.10054 6.12533 6.22767 6.29030 6.35446 6.45968 6.47492 6.49342 6.73400 6.75733 6.80529 7.01788 7.28915 7.45252 7.80714 8.15250 8.42816 8.64711 9.06218 9.61212 11.09271 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039243 B = 0.003567 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.330298 B = 7847.111169 C = 8197.982643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.688 5.688 11 C 0.060 3.940 12 C -0.082 4.082 13 C -0.101 4.101 14 C -0.083 4.083 15 C -0.071 4.071 16 C -0.118 4.118 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.079 4.079 22 C -0.108 4.108 23 H 0.260 0.740 24 H -0.015 1.015 25 H 0.027 0.973 26 H 0.327 0.673 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 -20.600 2.267 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.070 4.070 12 C -0.101 4.101 13 C -0.139 4.139 14 C -0.120 4.120 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.137 4.137 20 C -0.077 4.077 21 C -0.116 4.116 22 C -0.146 4.146 23 H 0.070 0.930 24 H 0.003 0.997 25 H 0.045 0.955 26 H 0.143 0.857 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.102 -20.446 2.957 21.845 hybrid contribution -0.107 0.817 -0.781 1.135 sum 6.994 -19.628 2.176 20.950 Atomic orbital electron populations 1.69978 1.06098 1.26632 1.51101 1.25004 0.94876 0.99398 0.95417 0.86434 0.80069 0.83377 0.77481 1.19641 1.21133 1.21008 1.21238 0.93537 0.90273 1.50045 0.91913 1.19544 0.90649 0.87487 0.95673 1.60656 1.21158 1.01340 1.48640 1.21996 0.95116 0.90313 0.99568 1.20696 0.96991 0.93755 0.98632 1.21236 0.95183 1.00137 0.97310 1.20913 0.98545 0.91477 1.01092 1.19794 0.96568 0.96234 0.94469 1.21161 1.00429 0.96202 0.95853 1.21108 0.98589 0.95034 0.99750 1.21080 0.98607 0.99827 0.95257 1.21111 1.00304 0.95917 0.96359 1.19692 0.97112 0.94041 0.96901 1.20807 0.99265 0.98147 0.93378 1.21292 0.97574 0.93674 1.02039 0.93002 0.99744 0.95536 0.85719 0.96560 0.92011 0.92056 0.89060 0.92551 0.90930 0.91269 0.86105 0.86499 0.86551 0.86309 0.90734 0.91392 0.91726 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.13 5.44 -4.98 -0.03 5.10 16 10 N -0.69 -14.62 5.46 -115.06 -0.63 -15.25 16 11 C 0.06 1.07 5.00 -3.82 -0.02 1.05 16 12 C -0.08 -1.14 1.84 -92.05 -0.17 -1.31 16 13 C -0.10 -1.42 4.87 -27.41 -0.13 -1.56 16 14 C -0.08 -0.99 5.47 -27.47 -0.15 -1.14 16 15 C -0.07 -0.85 4.96 -104.63 -0.52 -1.37 16 16 C -0.12 -1.33 9.69 -39.51 -0.38 -1.71 16 17 C -0.13 -1.31 10.05 -39.55 -0.40 -1.70 16 18 C -0.13 -1.31 10.05 -39.55 -0.40 -1.71 16 19 C -0.12 -1.27 9.69 -39.50 -0.38 -1.65 16 20 C -0.08 -0.90 4.99 -104.63 -0.52 -1.42 16 21 C -0.08 -0.84 5.46 -27.48 -0.15 -0.99 16 22 C -0.11 -1.31 4.90 -27.41 -0.13 -1.44 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.33 6.63 8.72 -39.29 -0.34 6.29 16 27 H 0.02 0.29 8.05 -51.93 -0.42 -0.12 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 30 H 0.09 1.47 7.19 -51.93 -0.37 1.09 16 31 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 32 H 0.07 0.82 6.90 -51.93 -0.36 0.47 16 33 H 0.07 0.76 7.91 -51.93 -0.41 0.35 16 34 H 0.12 1.18 7.97 -52.49 -0.42 0.76 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.04 7.97 -52.49 -0.42 0.63 16 38 H 0.07 0.78 6.90 -51.93 -0.36 0.42 16 39 H 0.07 0.62 7.92 -51.93 -0.41 0.21 16 40 H 0.06 0.75 8.01 -51.93 -0.42 0.33 16 41 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -30.27 324.50 -10.63 -40.90 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.81 Total: 2.42 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.80 Total: -23.34 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.11 Total: -41.66 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.27 -10.63 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530236820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.763 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds