Wall clock time and date at job start Mon Mar 30 2020 07:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00331 * 2 1 4 4 H 1.48500 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47230 * 300.00262 * 3 2 1 6 6 H 1.48497 * 109.47267 * 59.99906 * 3 2 1 7 7 C 1.37880 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00411 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47458 * 180.02562 * 11 10 9 13 13 C 1.51587 * 108.49360 * 60.12741 * 12 11 10 14 14 C 1.53071 * 110.94547 * 189.42524 * 13 12 11 15 15 C 1.51462 * 108.24032 * 274.31871 * 14 13 12 16 16 C 1.38381 * 119.51961 * 250.27615 * 15 14 13 17 17 C 1.38300 * 119.61547 * 180.24771 * 16 15 14 18 18 C 1.38260 * 120.05276 * 0.27256 * 17 16 15 19 19 C 1.38293 * 120.05888 * 0.02562 * 18 17 16 20 20 C 1.37045 * 120.13906 * 71.10872 * 15 14 13 21 21 C 1.51450 * 120.16652 * 359.50001 * 20 15 14 22 22 C 1.51588 * 108.48902 * 185.00036 * 12 11 10 23 23 H 0.96996 * 119.99662 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47149 * 60.00281 * 9 7 2 25 25 H 1.08999 * 109.47263 * 300.00115 * 9 7 2 26 26 H 1.00903 * 111.00133 * 303.95319 * 10 9 7 27 27 H 1.08995 * 109.46756 * 59.99367 * 11 10 9 28 28 H 1.09000 * 109.46521 * 300.00278 * 11 10 9 29 29 H 1.09005 * 108.41943 * 302.64019 * 12 11 10 30 30 H 1.08997 * 109.18373 * 309.80425 * 13 12 11 31 31 H 1.09000 * 109.18342 * 69.09541 * 13 12 11 32 32 H 1.09000 * 109.63373 * 34.08160 * 14 13 12 33 33 H 1.08998 * 109.63882 * 154.70273 * 14 13 12 34 34 H 1.08002 * 120.19523 * 0.53045 * 16 15 14 35 35 H 1.07999 * 119.97270 * 180.30167 * 17 16 15 36 36 H 1.07998 * 119.96819 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.18804 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.63886 * 49.24574 * 21 20 15 39 39 H 1.09003 * 109.64062 * 169.65385 * 21 20 15 40 40 H 1.09003 * 109.18682 * 50.23121 * 22 12 11 41 41 H 1.08993 * 109.14704 * 290.94942 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 0.0001 12 6 2.5301 -6.0431 0.0007 13 6 3.3837 -5.9199 1.2473 14 6 4.5731 -6.8819 1.1933 15 6 4.1189 -8.2273 1.7204 16 6 4.5855 -8.6728 2.9447 17 6 4.1761 -9.9032 3.4255 18 6 3.3101 -10.6837 2.6823 19 6 2.8521 -10.2357 1.4567 20 6 3.2655 -9.0037 0.9808 21 6 2.7633 -8.5156 -0.3621 22 6 1.7887 -7.3595 -0.1240 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8404 -3.5488 -0.7819 27 1 0.8800 -4.9817 -0.8896 28 1 0.8806 -4.9812 0.8903 29 1 3.1750 -5.9257 -0.8702 30 1 3.7533 -4.8977 1.3287 31 1 2.7760 -6.1516 2.1219 32 1 4.9145 -6.9849 0.1633 33 1 5.3828 -6.4987 1.8142 34 1 5.2619 -8.0612 3.5234 35 1 4.5329 -10.2544 4.3825 36 1 2.9909 -11.6441 3.0593 37 1 2.1753 -10.8435 0.8747 38 1 3.6036 -8.1686 -0.9634 39 1 2.2532 -9.3281 -0.8798 40 1 1.0919 -7.3004 -0.9601 41 1 1.2314 -7.5442 0.7943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530236820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:32 Heat of formation + Delta-G solvation = -20.302079 kcal Electronic energy + Delta-G solvation = -18867.742983 eV Core-core repulsion = 16131.071043 eV Total energy + Delta-G solvation = -2736.671941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01969 -38.51552 -36.30209 -34.50101 -33.92729 -32.40500 -30.45600 -29.16895 -27.05228 -24.86288 -24.32836 -23.24758 -22.83359 -20.97635 -20.86000 -18.56228 -17.49783 -16.85892 -16.44370 -16.17785 -15.89732 -15.57905 -15.23757 -15.08141 -14.42892 -14.34043 -13.98690 -13.85993 -13.62632 -13.35363 -13.25576 -12.90384 -12.67775 -12.62920 -12.59718 -12.45320 -12.09874 -11.72769 -11.55448 -11.43273 -11.34092 -11.23561 -11.09857 -10.67119 -9.61760 -9.38929 -9.08075 -8.23089 -6.34450 0.54472 0.55896 1.41097 1.41940 1.56036 2.39946 2.92846 3.10263 3.56149 3.71415 3.86199 3.93795 4.11024 4.14392 4.22949 4.29973 4.46814 4.53171 4.59078 4.62564 4.68929 4.76480 4.79806 4.94169 4.98506 5.02532 5.03212 5.09595 5.19007 5.24502 5.28432 5.34026 5.40212 5.52328 5.61250 5.62989 5.68337 5.69789 5.89883 6.02102 6.22062 6.45411 6.73749 6.90517 7.36840 8.88958 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039243 B = 0.003567 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.330298 B = 7847.111169 C = 8197.982643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.682 5.682 11 C 0.061 3.939 12 C -0.070 4.070 13 C -0.094 4.094 14 C -0.075 4.075 15 C -0.089 4.089 16 C -0.133 4.133 17 C -0.133 4.133 18 C -0.134 4.134 19 C -0.127 4.127 20 C -0.092 4.092 21 C -0.073 4.073 22 C -0.102 4.102 23 H 0.265 0.735 24 H -0.041 1.041 25 H -0.005 1.005 26 H 0.335 0.665 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 -21.632 2.091 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.313 5.313 11 C -0.068 4.068 12 C -0.088 4.088 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.089 4.089 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.140 4.140 23 H 0.074 0.926 24 H -0.024 1.024 25 H 0.013 0.987 26 H 0.152 0.848 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.434 -21.504 2.777 23.264 hybrid contribution -0.558 1.063 -0.684 1.382 sum 7.875 -20.441 2.092 22.005 Atomic orbital electron populations 1.70108 1.07902 1.27943 1.51689 1.26000 0.95806 1.03547 0.94602 0.85247 0.78979 0.78118 0.77718 1.18470 1.20282 1.20451 1.21588 0.93877 0.91339 1.50354 0.91540 1.19195 0.90717 0.89221 0.92904 1.60524 1.20282 1.01412 1.49058 1.22080 0.96031 0.89947 0.98780 1.20632 0.96031 0.93195 0.98990 1.21114 0.95908 0.99498 0.96690 1.20811 0.97488 0.91110 1.01803 1.19881 0.97513 0.96328 0.95180 1.21388 1.00855 0.96953 0.95854 1.21418 0.98402 0.94690 1.00618 1.21428 0.98050 1.00692 0.95021 1.21404 1.00432 0.95803 0.96832 1.19877 0.97356 0.94611 0.97335 1.20774 0.99025 0.97870 0.93313 1.21223 0.97817 0.93109 1.01867 0.92638 1.02378 0.98669 0.84795 0.96607 0.93465 0.91098 0.91355 0.94005 0.90163 0.90642 0.85294 0.84519 0.84293 0.84505 0.90303 0.89456 0.91005 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.53 -30.90 9.32 25.60 0.24 -30.66 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.43 5.44 85.56 0.47 11.89 16 10 N -0.68 -29.70 5.46 -517.94 -2.83 -32.53 16 11 C 0.06 2.22 5.00 86.30 0.43 2.65 16 12 C -0.07 -1.92 1.84 -11.72 -0.02 -1.94 16 13 C -0.09 -2.67 4.87 30.15 0.15 -2.52 16 14 C -0.08 -1.72 5.47 30.11 0.16 -1.56 16 15 C -0.09 -2.04 4.96 -19.87 -0.10 -2.14 16 16 C -0.13 -2.82 9.69 22.32 0.22 -2.60 16 17 C -0.13 -2.50 10.05 22.29 0.22 -2.27 16 18 C -0.13 -2.40 10.05 22.29 0.22 -2.17 16 19 C -0.13 -2.42 9.69 22.32 0.22 -2.20 16 20 C -0.09 -1.98 4.99 -19.87 -0.10 -2.08 16 21 C -0.07 -1.40 5.46 30.11 0.16 -1.23 16 22 C -0.10 -2.36 4.90 30.16 0.15 -2.22 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 25 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.33 13.68 8.72 -89.69 -0.78 12.90 16 27 H 0.02 0.58 8.05 -2.39 -0.02 0.56 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.85 7.82 -2.38 -0.02 1.83 16 30 H 0.07 2.23 7.19 -2.39 -0.02 2.22 16 31 H 0.04 1.28 7.84 -2.39 -0.02 1.26 16 32 H 0.08 1.70 6.90 -2.39 -0.02 1.68 16 33 H 0.07 1.61 7.91 -2.39 -0.02 1.59 16 34 H 0.13 2.39 7.97 -2.91 -0.02 2.37 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.14 2.02 7.97 -2.91 -0.02 2.00 16 38 H 0.08 1.46 6.90 -2.38 -0.02 1.44 16 39 H 0.09 1.35 7.92 -2.39 -0.02 1.33 16 40 H 0.07 1.56 8.01 -2.39 -0.02 1.54 16 41 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 Total: -1.00 -65.52 324.50 2.57 -62.95 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.21 Total: 18.77 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 2.88 Total: -38.68 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -2.55 Total: -89.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.52 2.57 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530236820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.643 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds