Wall clock time and date at job start Mon Mar 30 2020 07:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48494 * 109.47268 * 270.00009 * 3 2 1 5 5 H 1.48497 * 109.46987 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99631 * 3 2 1 7 7 C 1.37882 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00244 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.39675 * 120.00236 * 180.02562 * 10 9 7 12 12 C 1.38936 * 120.07273 * 359.97438 * 11 10 9 13 13 C 1.38080 * 119.92385 * 179.97438 * 12 11 10 14 14 C 1.38310 * 120.07413 * 359.97438 * 13 12 11 15 15 C 1.38261 * 120.14989 * 0.27913 * 14 13 12 16 16 C 1.50698 * 119.96081 * 179.72100 * 15 14 13 17 17 C 1.52994 * 109.47193 * 60.00313 * 16 15 14 18 18 C 1.52999 * 109.47608 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47400 * 59.99156 * 18 17 16 20 20 C 1.52994 * 109.47430 * 300.00953 * 19 18 17 21 21 C 1.53003 * 109.47347 * 59.99644 * 20 19 18 22 22 C 1.38124 * 120.07473 * 359.45020 * 15 14 13 23 23 H 0.96998 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47089 * 59.99997 * 9 7 2 25 25 H 1.09000 * 109.46856 * 299.99815 * 9 7 2 26 26 H 0.96999 * 119.99965 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.03479 * 359.97438 * 12 11 10 28 28 H 1.08001 * 119.95839 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.92082 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47267 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.47308 * 299.99840 * 17 16 15 32 32 H 1.09003 * 109.47475 * 59.99327 * 17 16 15 33 33 H 1.09006 * 109.46498 * 299.99585 * 18 17 16 34 34 H 1.09002 * 109.47515 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47389 * 180.02562 * 19 18 17 36 36 H 1.09006 * 109.46489 * 60.00981 * 19 18 17 37 37 H 1.09006 * 109.47308 * 299.99526 * 20 19 18 38 38 H 1.09003 * 109.47507 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.46783 * 180.02562 * 21 20 19 40 40 H 1.08992 * 109.47081 * 60.00265 * 21 20 19 41 41 H 1.07999 * 120.04037 * 180.27347 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 1.7373 -4.9296 0.0015 12 6 0.3717 -5.1852 0.0005 13 6 -0.0852 -6.4882 -0.0003 14 6 0.8149 -7.5383 -0.0008 15 6 2.1746 -7.2875 0.0055 16 6 3.1515 -8.4349 0.0113 17 6 2.9391 -9.2920 -1.2381 18 6 3.9305 -10.4573 -1.2319 19 6 3.7055 -11.3118 0.0172 20 6 3.9180 -10.4547 1.2665 21 6 2.9265 -9.2894 1.2604 22 6 2.6385 -5.9865 0.0007 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4356 0.0028 27 1 -0.3317 -4.3657 0.0004 28 1 -1.1467 -6.6876 -0.0006 29 1 0.4548 -8.5566 -0.0010 30 1 4.1695 -8.0453 0.0153 31 1 1.9210 -9.6817 -1.2426 32 1 3.0989 -8.6832 -2.1280 33 1 4.9486 -10.0680 -1.2272 34 1 3.7788 -11.0682 -2.1218 35 1 4.4121 -12.1417 0.0218 36 1 2.6874 -11.7011 0.0124 37 1 4.9362 -10.0653 1.2713 38 1 3.7573 -11.0633 2.1564 39 1 3.0782 -8.6786 2.1503 40 1 1.9085 -9.6787 1.2557 41 1 3.7006 -5.7912 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530236837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:32 Heat of formation + Delta-G solvation = -14.688759 kcal Electronic energy + Delta-G solvation = -18662.439109 eV Core-core repulsion = 15926.010580 eV Total energy + Delta-G solvation = -2736.428529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56135 -37.85535 -34.97998 -32.74425 -31.96363 -30.78451 -29.60807 -28.05736 -26.22671 -23.50611 -22.58037 -22.20906 -21.86201 -20.10727 -19.12732 -17.16525 -16.10111 -15.49215 -15.10427 -14.92796 -14.50357 -14.22262 -14.14821 -13.70190 -13.30538 -13.04110 -12.75322 -12.70432 -12.29671 -12.23033 -12.00957 -11.58493 -11.29958 -11.18332 -11.08405 -10.94975 -10.85308 -10.73798 -10.30246 -10.24978 -10.18300 -9.86090 -9.39209 -9.33397 -8.54339 -8.18349 -6.50907 -6.21162 -4.26308 1.98790 2.27152 3.22424 3.28690 3.31571 4.25196 4.43114 4.52541 4.67891 4.71696 4.78830 5.13471 5.15967 5.24724 5.27291 5.42947 5.46887 5.52750 5.53514 5.60746 5.75018 5.80350 5.94014 5.97369 6.00202 6.07769 6.10588 6.16754 6.22944 6.34596 6.38105 6.51717 6.58776 7.02129 7.07433 7.18458 7.22685 7.43740 7.50822 7.68898 7.95619 8.32432 8.69121 8.91894 9.40078 10.89513 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041907 B = 0.003480 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.989252 B = 8044.386781 C = 8366.297473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.731 5.731 11 C 0.234 3.766 12 C -0.206 4.206 13 C -0.070 4.070 14 C -0.198 4.198 15 C -0.033 4.033 16 C -0.043 4.043 17 C -0.109 4.109 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.214 4.214 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.390 0.610 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -19.569 0.028 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.353 5.353 11 C 0.125 3.875 12 C -0.229 4.229 13 C -0.089 4.089 14 C -0.219 4.219 15 C -0.033 4.033 16 C -0.062 4.062 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.237 4.237 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.223 0.777 27 H 0.140 0.860 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.071 -19.217 0.033 19.875 hybrid contribution 0.689 1.150 -0.009 1.341 sum 5.760 -18.067 0.024 18.963 Atomic orbital electron populations 1.69948 1.06082 1.27327 1.49332 1.24937 0.94942 0.99455 0.94674 0.86410 0.79679 0.82581 0.78256 1.20440 1.20960 1.19749 1.21210 0.93350 0.90480 1.52698 0.92020 1.19087 0.88679 0.82676 0.96537 1.45502 1.09452 1.02514 1.77876 1.18042 0.92822 0.85518 0.91130 1.20733 0.94077 0.97157 1.10980 1.20776 0.98622 0.92285 0.97224 1.20437 0.92510 0.97917 1.11047 1.19362 0.93752 0.92937 0.97278 1.20106 0.97895 0.93227 0.94970 1.21577 0.99455 0.96083 0.97553 1.21554 0.99645 0.96986 0.97548 1.21536 1.01474 0.97747 0.94912 1.21555 0.99659 0.96981 0.97541 1.21576 0.99436 0.96093 0.97555 1.20374 0.98107 0.91449 1.13767 0.92466 0.96237 0.96231 0.77680 0.86035 0.87105 0.87591 0.91020 0.91734 0.91902 0.92140 0.92245 0.92466 0.92092 0.92138 0.92246 0.91906 0.91724 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.49 4.67 -5.20 -0.02 6.47 16 10 N -0.73 -15.93 5.73 -59.81 -0.34 -16.27 16 11 C 0.23 4.66 6.65 -83.79 -0.56 4.10 16 12 C -0.21 -4.03 9.31 -39.38 -0.37 -4.39 16 13 C -0.07 -1.16 10.04 -39.61 -0.40 -1.56 16 14 C -0.20 -3.00 8.71 -39.55 -0.34 -3.34 16 15 C -0.03 -0.49 4.78 -104.66 -0.50 -0.99 16 16 C -0.04 -0.52 2.36 -91.77 -0.22 -0.74 16 17 C -0.11 -1.17 5.02 -26.73 -0.13 -1.31 16 18 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 19 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 20 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 21 C -0.11 -1.17 5.02 -26.73 -0.13 -1.31 16 22 C -0.21 -3.67 9.52 -39.38 -0.37 -4.05 16 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.02 0.55 7.95 -51.93 -0.41 0.13 16 25 H 0.02 0.55 7.95 -51.93 -0.41 0.13 16 26 H 0.39 7.92 8.33 -40.82 -0.34 7.58 16 27 H 0.12 2.53 6.74 -52.49 -0.35 2.18 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.11 1.38 7.09 -52.49 -0.37 1.01 16 30 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 31 H 0.06 0.69 7.38 -51.93 -0.38 0.31 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.70 7.38 -51.93 -0.38 0.31 16 41 H 0.11 1.73 7.94 -52.49 -0.42 1.32 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -28.30 326.18 -10.48 -38.78 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.82 Total: 5.77 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -3.94 Total: -24.15 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.39 Total: -41.29 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.30 -10.48 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530236837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.092 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds